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core::scoring::ScoringManager Class Reference

#include <ScoringManager.hh>

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Public Member Functions

void factory_register (methods::EnergyMethodCreatorOP creator)
 
PairEPotential const & get_PairEPotential () const
 
GenBornPotential const & get_GenBornPotential () const
 
dna::DNA_BasePotential const & get_DNA_BasePotential () const
 
Ramachandran2B const & get_Ramachandran2B () const
 RotamerLibrary & get_RotamerLibrary() const;. More...
 
Ramachandran const & get_Ramachandran () const
 
dna::DNABFormPotential const & get_DNABFormPotential () const
 
dna::DNATorsionPotential const & get_DNATorsionPotential () const
 
OmegaTether const & get_OmegaTether () const
 
SmoothEnvPairPotential const & get_SmoothEnvPairPotential () const
 
CenHBPotential const & get_CenHBPotential () const
 
EnvPairPotential const & get_EnvPairPotential () const
 
SecondaryStructurePotential const & get_SecondaryStructurePotential () const
 
AtomVDW const & get_AtomVDW (std::string const &atom_type_set_name) const
 
rna::RNA_AtomVDW const & get_RNA_AtomVDW () const
 
geometric_solvation::DatabaseOccSolEne
const & 		get_DatabaseOccSolEne (std::string const &atom_type_set_name, Real const &min_occ_energy) const
 
carbon_hbonds::CarbonHBondPotential
const & 		get_CarbonHBondPotential () const
 
rna::RNA_LowResolutionPotential
const & 		get_RNA_LowResolutionPotential () const
 
rna::RNA_TorsionPotential const & get_RNA_TorsionPotential () const
 
rna::chemical_shift::RNA_ChemicalShiftPotential
const & 		get_RNA_ChemicalShiftPotential () const
 
dna::DirectReadoutPotential const & get_DirectReadoutPotential () const
 
mm::MMLJLibrary const & get_MMLJLibrary () const
 
mm::MMLJEnergyTable const & get_MMLJEnergyTable () const
 
mm::MMTorsionLibrary const & get_MMTorsionLibrary () const
 
mm::MMBondAngleLibrary const & get_MMBondAngleLibrary () const
 
mm::MMBondLengthLibrary const & get_MMBondLengthLibrary () const
 
nv::NVlookup const & get_NVLookupTable () const
 
core::scoring::orbitals::OrbitalsLookup
const & 		get_OrbitalsLookupTable () const
 
interface::DDPlookup const & get_DDPLookupTable () const
 
P_AA const & get_P_AA () const
 
UnfoldedStatePotential const & get_UnfoldedStatePotential (std::string const &type) const
 
WaterAdductHBondPotential const & get_WaterAdductHBondPotential () const
 
MembranePotential const & get_MembranePotential () const
 
Membrane_FAPotential const & get_Membrane_FAPotential () const
 
PoissonBoltzmannPotential const & get_PoissonBoltzmannPotential () const
 
disulfides::FullatomDisulfidePotential & get_FullatomDisulfidePotential () const
 
disulfides::CentroidDisulfidePotential & get_CentroidDisulfidePotential () const
 
disulfides::DisulfideMatchingPotential & get_DisulfideMatchingPotential () const
 
methods::EnergyMethodOP energy_method (ScoreType const &t, methods::EnergyMethodOptions const &options) const
 alot of this was pulled from RotamerLibrary.cc More...
 
void add_etable (std::string const &name, etable::EtableOP etable)
 
void add_memb_etable (std::string const &name, etable::MembEtableOP etable)
 pba More...
 
etable::MembEtableCAP memb_etable (std::string const &table_id) const
 pba More...
 
etable::EtableCAP etable (std::string const &etable_id) const
 

Static Public Member Functions

static ScoringManager * get_instance ()
 

Private Member Functions

 ScoringManager ()
 
 ~ScoringManager ()
 

Private Attributes

PairEPotentialOP pairE_potential_
 
RamachandranOP rama_
 
Ramachandran2BOP rama2b_
 
OmegaTetherOP omega_
 
EnvPairPotentialOP env_pair_potential_
 
SmoothEnvPairPotentialOP smooth_env_pair_potential_
 
CenHBPotentialOP cen_hb_potential_
 
SecondaryStructurePotentialOP secondary_structure_potential_
 
std::map< std::string, AtomVDWOP > atom_vdw_
 
rna::RNA_AtomVDWOP rna_atom_vdw_
 
geometric_solvation::DatabaseOccSolEneOP occ_hbond_sol_database_
 
dna::DirectReadoutPotentialOP dna_dr_potential_
 
mm::MMLJLibraryOP mm_lj_library_
 
mm::MMLJEnergyTableOP mm_lj_energy_table_
 
mm::MMTorsionLibraryOP mm_torsion_library_
 
mm::MMBondAngleLibraryOP mm_bondangle_library_
 
mm::MMBondLengthLibraryOP mm_bondlength_library_
 
dna::DNABFormPotential * dnabform_
 
dna::DNATorsionPotential * dna_torsion_potential_
 
dna::DNA_BasePotentialOP DNA_base_potential_
 
carbon_hbonds::CarbonHBondPotentialOP carbon_hbond_potential_
 
rna::RNA_LowResolutionPotentialOP rna_low_resolution_potential_
 
rna::RNA_TorsionPotentialOP rna_torsion_potential_
 
rna::chemical_shift::RNA_ChemicalShiftPotential * rna_chemical_shift_potential_
 
P_AAOP p_aa_
 
WaterAdductHBondPotentialOP water_adduct_hbond_potential_
 
GenBornPotentialOP gen_born_potential_
 
disulfides::FullatomDisulfidePotentialOP fa_disulfide_potential_
 
disulfides::CentroidDisulfidePotentialOP cen_disulfide_potential_
 
disulfides::DisulfideMatchingPotentialOP disulfide_matching_potential_
 
MembranePotentialOP membrane_potential_
 
Membrane_FAPotentialOP membrane_fapotential_
 
PoissonBoltzmannPotentialOP PB_potential_
 
UnfoldedStatePotentialOP unf_state_
 
nv::NVlookupOP NV_lookup_table_
 
orbitals::OrbitalsLookupOP orbitals_lookup_table_
 
interface::DDPlookupOP DDP_lookup_table_
 
std::map< std::string,
etable::EtableOP > 		etables_
 
std::map< std::string,
etable::MembEtableOP > 		memb_etables_
 
utility::vector1
< methods::EnergyMethodCreatorOP > 		method_creator_map_
 mutable std::map< std::string, pack::dunbrack::SingleResidueRotamerLibraryCOP > ncaa_rotlibs_; More...
 

Static Private Attributes

static ScoringManager * instance_
 

Detailed Description

Definition at line 90 of file ScoringManager.hh.

Constructor & Destructor Documentation

core::scoring::ScoringManager::ScoringManager ( )
private

Definition at line 107 of file ScoringManager.cc.

Referenced by get_instance().

core::scoring::ScoringManager::~ScoringManager ( )
private

Definition at line 104 of file ScoringManager.cc.

Member Function Documentation

void core::scoring::ScoringManager::add_etable ( std::string const &  name,
etable::EtableOP  etable 
)

Definition at line 633 of file ScoringManager.cc.

References etable(), and etables_.

void core::scoring::ScoringManager::add_memb_etable ( std::string const &  name,
etable::MembEtableOP  etable 
)

pba

Definition at line 653 of file ScoringManager.cc.

References etable(), and memb_etables_.

methods::EnergyMethodOP core::scoring::ScoringManager::energy_method ( ScoreType const &  score_type,
methods::EnergyMethodOptions const &  options 
) const

alot of this was pulled from RotamerLibrary.cc

When a ScoreFunction the weight for a particular ScoreType set from 0 to some non-zero value, it will request an instance of the EnergyMethod class that is responsible for calculating that ScoreType. The ScoringManager responds to that request by asking the EnergyMethodCreator that has claimed responsibility for this ScoreType for a new instance. EnergyMethodCreators must first have registered themselves with the ScoringManager. This should have been done at load time, using a static-variable-initialization function call. See src/core/scoring/etable/EtableEnergy.cc for an example of how the EtableEnergyCreator class registers itself with the ScoringManager.

Definition at line 826 of file ScoringManager.cc.

References method_creator_map_, core::scoring::n_score_types, and core::scoring::python.

etable::EtableCAP core::scoring::ScoringManager::etable ( std::string const &  etable_id) const

Definition at line 682 of file ScoringManager.cc.

References etables_, core::chemical::FA_STANDARD, core::scoring::FA_STANDARD_DEFAULT, core::scoring::FA_STANDARD_SOFT, and core::chemical::ChemicalManager::get_instance().

Referenced by add_etable(), add_memb_etable(), core::scoring::rna::RNA_FullAtomVDW_BasePhosphateCreator::create_energy_method(), and memb_etable().

void core::scoring::ScoringManager::factory_register ( methods::EnergyMethodCreatorOP  creator)

The ScoringManager acts as an EnergyMethodFactory. All EnergyMethods must create a helper class, an EnergyMethodCreator class, that will respond to a call to its create_energy_method by returning a new instance of that EnergyMethod its helping. This Creator class must also register itself with the ScoringManager at load time and hand an instance of itself to the singleton ScoringManager instance.

Definition at line 164 of file ScoringManager.cc.

References method_creator_map_.

Referenced by core::scoring::methods::PyEnergyMethodRegistrator::PyEnergyMethodRegistrator().

AtomVDW const & core::scoring::ScoringManager::get_AtomVDW ( std::string const &  atom_type_set_name) const

Definition at line 279 of file ScoringManager.cc.

References atom_vdw_.

carbon_hbonds::CarbonHBondPotential const & core::scoring::ScoringManager::get_CarbonHBondPotential ( ) const

Definition at line 289 of file ScoringManager.cc.

References carbon_hbond_potential_.

CenHBPotential const & core::scoring::ScoringManager::get_CenHBPotential ( ) const

Definition at line 213 of file ScoringManager.cc.

References cen_hb_potential_.

disulfides::CentroidDisulfidePotential & core::scoring::ScoringManager::get_CentroidDisulfidePotential ( ) const

Definition at line 502 of file ScoringManager.cc.

References cen_disulfide_potential_.

geometric_solvation::DatabaseOccSolEne const & core::scoring::ScoringManager::get_DatabaseOccSolEne ( std::string const &  atom_type_set_name,
Real const &  min_occ_energy 
) const

Definition at line 311 of file ScoringManager.cc.

References occ_hbond_sol_database_.

interface::DDPlookup const & core::scoring::ScoringManager::get_DDPLookupTable ( ) const

Definition at line 576 of file ScoringManager.cc.

References DDP_lookup_table_.

dna::DirectReadoutPotential const & core::scoring::ScoringManager::get_DirectReadoutPotential ( ) const

Definition at line 355 of file ScoringManager.cc.

References dna_dr_potential_.

disulfides::DisulfideMatchingPotential & core::scoring::ScoringManager::get_DisulfideMatchingPotential ( ) const

Definition at line 511 of file ScoringManager.cc.

References disulfide_matching_potential_.

dna::DNA_BasePotential const & core::scoring::ScoringManager::get_DNA_BasePotential ( ) const

Definition at line 180 of file ScoringManager.cc.

References DNA_base_potential_.

dna::DNABFormPotential const & core::scoring::ScoringManager::get_DNABFormPotential ( ) const

Definition at line 432 of file ScoringManager.cc.

References dnabform_.

dna::DNATorsionPotential const & core::scoring::ScoringManager::get_DNATorsionPotential ( ) const

Definition at line 444 of file ScoringManager.cc.

References dna_torsion_potential_.

EnvPairPotential const & core::scoring::ScoringManager::get_EnvPairPotential ( ) const

Definition at line 191 of file ScoringManager.cc.

References env_pair_potential_.

disulfides::FullatomDisulfidePotential & core::scoring::ScoringManager::get_FullatomDisulfidePotential ( ) const

Definition at line 493 of file ScoringManager.cc.

References fa_disulfide_potential_.

GenBornPotential const & core::scoring::ScoringManager::get_GenBornPotential ( ) const

Definition at line 257 of file ScoringManager.cc.

References gen_born_potential_.

ScoringManager * core::scoring::ScoringManager::get_instance ( )
static

SAFE singleton initialization; static from within a function ensures proper load-time behavior

Definition at line 95 of file ScoringManager.cc.

References instance_, and ScoringManager().

Referenced by protocols::match::downstream::ScoringSecMatchRPE::check2bsc(), protocols::optimize_weights::IterativeOptEDriver::collect_ddG_of_mutation_data(), core::scoring::rna::RNA_FullAtomVDW_BasePhosphateCreator::create_energy_method(), core::scoring::etable::CoarseEtableEnergyCreator::create_energy_method(), core::scoring::disulfides::CentroidDisulfideEnergyCreator::create_energy_method(), core::scoring::disulfides::DisulfideMatchingEnergyCreator::create_energy_method(), core::scoring::rna::RNA_LJ_BaseEnergyCreator::create_energy_method(), core::scoring::etable::EtableEnergyCreator::create_energy_method(), core::scoring::methods::Fa_MbenvEnergyCreator::create_energy_method(), core::scoring::disulfides::FullatomDisulfideEnergyCreator::create_energy_method(), core::scoring::methods::Fa_MbsolvEnergyCreator::create_energy_method(), core::scoring::methods::LK_CosThetaEnergyCreator::create_energy_method(), core::scoring::methods::LK_hackCreator::create_energy_method(), core::optimization::CartesianMultifunc::dump(), core::optimization::AtomTreeMultifunc::dump(), core::optimization::symmetry::SymAtomTreeMultifunc::dump(), protocols::optimize_weights::IterativeOptEDriver::get_nat_aa_opte_data(), protocols::features::HBondFeatures::insert_hbond_lennard_jones_row(), protocols::simple_moves::SmallMover::make_move(), protocols::simple_moves::ShearMover::make_move(), protocols::optimize_weights::IterativeOptEDriver::output_weighted_unfolded_energies(), protocols::loops::loop_closure::kinematic_closure::KinematicMover::perform_rama_check(), core::scoring::methods::PyEnergyMethodRegistrator::PyEnergyMethodRegistrator(), protocols::toolbox::pose_metric_calculators::ClashCountCalculator::recompute(), protocols::qsar::scoring_grid::SolvationGrid::refresh(), protocols::match::output::MatchCollisionFilter::set_filter_by_lj(), core::scoring::ScoreFunction::set_weight(), core::scoring::dna::show_base_pair_params_with_z_scores(), and core::scoring::dna::show_new_base_step_params().

Membrane_FAPotential const & core::scoring::ScoringManager::get_Membrane_FAPotential ( ) const

Definition at line 235 of file ScoringManager.cc.

References membrane_fapotential_.

MembranePotential const & core::scoring::ScoringManager::get_MembranePotential ( ) const

Definition at line 224 of file ScoringManager.cc.

References membrane_potential_.

core::scoring::mm::MMBondAngleLibrary const & core::scoring::ScoringManager::get_MMBondAngleLibrary ( ) const

Definition at line 589 of file ScoringManager.cc.

References core::chemical::FA_STANDARD, core::chemical::ChemicalManager::get_instance(), and mm_bondangle_library_.

core::scoring::mm::MMBondLengthLibrary const & core::scoring::ScoringManager::get_MMBondLengthLibrary ( ) const

Definition at line 602 of file ScoringManager.cc.

References core::chemical::FA_STANDARD, core::chemical::ChemicalManager::get_instance(), and mm_bondlength_library_.

core::scoring::mm::MMLJEnergyTable const & core::scoring::ScoringManager::get_MMLJEnergyTable ( ) const

Definition at line 481 of file ScoringManager.cc.

References mm_lj_energy_table_.

core::scoring::mm::MMLJLibrary const & core::scoring::ScoringManager::get_MMLJLibrary ( ) const

Definition at line 468 of file ScoringManager.cc.

References core::chemical::FA_STANDARD, core::chemical::ChemicalManager::get_instance(), and mm_lj_library_.

core::scoring::mm::MMTorsionLibrary const & core::scoring::ScoringManager::get_MMTorsionLibrary ( ) const

Definition at line 455 of file ScoringManager.cc.

References core::chemical::FA_STANDARD, core::chemical::ChemicalManager::get_instance(), and mm_torsion_library_.

nv::NVlookup const & core::scoring::ScoringManager::get_NVLookupTable ( ) const

Definition at line 523 of file ScoringManager.cc.

References NV_lookup_table_.

OmegaTether const & core::scoring::ScoringManager::get_OmegaTether ( ) const

Definition at line 421 of file ScoringManager.cc.

References omega_.

orbitals::OrbitalsLookup const & core::scoring::ScoringManager::get_OrbitalsLookupTable ( ) const

Definition at line 537 of file ScoringManager.cc.

References orbitals_lookup_table_.

P_AA const & core::scoring::ScoringManager::get_P_AA ( ) const

Definition at line 365 of file ScoringManager.cc.

References p_aa_.

PairEPotential const & core::scoring::ScoringManager::get_PairEPotential ( ) const

Definition at line 149 of file ScoringManager.cc.

References pairE_potential_.

PoissonBoltzmannPotential const & core::scoring::ScoringManager::get_PoissonBoltzmannPotential ( ) const

Definition at line 268 of file ScoringManager.cc.

References PB_potential_.

Ramachandran const & core::scoring::ScoringManager::get_Ramachandran ( ) const

Definition at line 399 of file ScoringManager.cc.

References rama_.

Referenced by core::optimization::AtomTreeMultifunc::dump(), core::optimization::CartesianMultifunc::dump(), and core::optimization::symmetry::SymAtomTreeMultifunc::dump().

Ramachandran2B const & core::scoring::ScoringManager::get_Ramachandran2B ( ) const

RotamerLibrary & get_RotamerLibrary() const;.

Definition at line 410 of file ScoringManager.cc.

References rama2b_.

rna::RNA_AtomVDW const & core::scoring::ScoringManager::get_RNA_AtomVDW ( ) const

Definition at line 300 of file ScoringManager.cc.

References rna_atom_vdw_.

rna::chemical_shift::RNA_ChemicalShiftPotential const & core::scoring::ScoringManager::get_RNA_ChemicalShiftPotential ( ) const

Definition at line 344 of file ScoringManager.cc.

References rna_chemical_shift_potential_.

rna::RNA_LowResolutionPotential const & core::scoring::ScoringManager::get_RNA_LowResolutionPotential ( ) const

Definition at line 322 of file ScoringManager.cc.

References rna_low_resolution_potential_.

rna::RNA_TorsionPotential const & core::scoring::ScoringManager::get_RNA_TorsionPotential ( ) const

Definition at line 333 of file ScoringManager.cc.

References rna_torsion_potential_.

SecondaryStructurePotential const & core::scoring::ScoringManager::get_SecondaryStructurePotential ( ) const

Definition at line 246 of file ScoringManager.cc.

References secondary_structure_potential_.

SmoothEnvPairPotential const & core::scoring::ScoringManager::get_SmoothEnvPairPotential ( ) const

Definition at line 202 of file ScoringManager.cc.

References smooth_env_pair_potential_.

UnfoldedStatePotential const & core::scoring::ScoringManager::get_UnfoldedStatePotential ( std::string const &  type) const

Definition at line 615 of file ScoringManager.cc.

References unf_state_, core::scoring::UNFOLDED_MM_STD, core::scoring::UNFOLDED_RNA, and core::scoring::UNFOLDED_SCORE12.

Referenced by protocols::optimize_weights::IterativeOptEDriver::collect_ddG_of_mutation_data(), protocols::optimize_weights::IterativeOptEDriver::get_nat_aa_opte_data(), and protocols::optimize_weights::IterativeOptEDriver::output_weighted_unfolded_energies().

WaterAdductHBondPotential const & core::scoring::ScoringManager::get_WaterAdductHBondPotential ( ) const

Definition at line 374 of file ScoringManager.cc.

References water_adduct_hbond_potential_.

etable::MembEtableCAP core::scoring::ScoringManager::memb_etable ( std::string const &  table_id) const

pba

Definition at line 661 of file ScoringManager.cc.

References etable(), core::chemical::FA_STANDARD, core::scoring::FA_STANDARD_DEFAULT, core::chemical::ChemicalManager::get_instance(), and memb_etables_.

Referenced by core::scoring::methods::Fa_MbsolvEnergyCreator::create_energy_method().

Member Data Documentation

std::map< std::string, AtomVDWOP > core::scoring::ScoringManager::atom_vdw_
mutableprivate

Definition at line 247 of file ScoringManager.hh.

Referenced by get_AtomVDW().

carbon_hbonds::CarbonHBondPotentialOP core::scoring::ScoringManager::carbon_hbond_potential_
mutableprivate

Definition at line 260 of file ScoringManager.hh.

Referenced by get_CarbonHBondPotential().

disulfides::CentroidDisulfidePotentialOP core::scoring::ScoringManager::cen_disulfide_potential_
mutableprivate

Definition at line 268 of file ScoringManager.hh.

Referenced by get_CentroidDisulfidePotential().

CenHBPotentialOP core::scoring::ScoringManager::cen_hb_potential_
mutableprivate

Definition at line 245 of file ScoringManager.hh.

Referenced by get_CenHBPotential().

interface::DDPlookupOP core::scoring::ScoringManager::DDP_lookup_table_
mutableprivate

Definition at line 279 of file ScoringManager.hh.

Referenced by get_DDPLookupTable().

disulfides::DisulfideMatchingPotentialOP core::scoring::ScoringManager::disulfide_matching_potential_
mutableprivate

Definition at line 269 of file ScoringManager.hh.

Referenced by get_DisulfideMatchingPotential().

dna::DNA_BasePotentialOP core::scoring::ScoringManager::DNA_base_potential_
mutableprivate

Definition at line 259 of file ScoringManager.hh.

Referenced by get_DNA_BasePotential().

dna::DirectReadoutPotentialOP core::scoring::ScoringManager::dna_dr_potential_
mutableprivate

Definition at line 250 of file ScoringManager.hh.

Referenced by get_DirectReadoutPotential().

dna::DNATorsionPotential* core::scoring::ScoringManager::dna_torsion_potential_
mutableprivate

Definition at line 258 of file ScoringManager.hh.

Referenced by get_DNATorsionPotential().

dna::DNABFormPotential* core::scoring::ScoringManager::dnabform_
mutableprivate

Definition at line 257 of file ScoringManager.hh.

Referenced by get_DNABFormPotential().

EnvPairPotentialOP core::scoring::ScoringManager::env_pair_potential_
mutableprivate

Definition at line 243 of file ScoringManager.hh.

Referenced by get_EnvPairPotential().

std::map< std::string, etable::EtableOP > core::scoring::ScoringManager::etables_
mutableprivate

Definition at line 281 of file ScoringManager.hh.

Referenced by add_etable(), and etable().

disulfides::FullatomDisulfidePotentialOP core::scoring::ScoringManager::fa_disulfide_potential_
mutableprivate

Definition at line 267 of file ScoringManager.hh.

Referenced by get_FullatomDisulfidePotential().

GenBornPotentialOP core::scoring::ScoringManager::gen_born_potential_
mutableprivate

Definition at line 266 of file ScoringManager.hh.

Referenced by get_GenBornPotential().

ScoringManager * core::scoring::ScoringManager::instance_
staticprivate

Definition at line 231 of file ScoringManager.hh.

Referenced by get_instance().

std::map< std::string, etable::MembEtableOP > core::scoring::ScoringManager::memb_etables_
mutableprivate

Definition at line 285 of file ScoringManager.hh.

Referenced by add_memb_etable(), and memb_etable().

Membrane_FAPotentialOP core::scoring::ScoringManager::membrane_fapotential_
mutableprivate

Definition at line 271 of file ScoringManager.hh.

Referenced by get_Membrane_FAPotential().

MembranePotentialOP core::scoring::ScoringManager::membrane_potential_
mutableprivate

Definition at line 270 of file ScoringManager.hh.

Referenced by get_MembranePotential().

utility::vector1< methods::EnergyMethodCreatorOP > core::scoring::ScoringManager::method_creator_map_
private

mutable std::map< std::string, pack::dunbrack::SingleResidueRotamerLibraryCOP > ncaa_rotlibs_;

Definition at line 291 of file ScoringManager.hh.

Referenced by energy_method(), and factory_register().

mm::MMBondAngleLibraryOP core::scoring::ScoringManager::mm_bondangle_library_
mutableprivate

Definition at line 254 of file ScoringManager.hh.

Referenced by get_MMBondAngleLibrary().

mm::MMBondLengthLibraryOP core::scoring::ScoringManager::mm_bondlength_library_
mutableprivate

Definition at line 255 of file ScoringManager.hh.

Referenced by get_MMBondLengthLibrary().

mm::MMLJEnergyTableOP core::scoring::ScoringManager::mm_lj_energy_table_
mutableprivate

Definition at line 252 of file ScoringManager.hh.

Referenced by get_MMLJEnergyTable().

mm::MMLJLibraryOP core::scoring::ScoringManager::mm_lj_library_
mutableprivate

Definition at line 251 of file ScoringManager.hh.

Referenced by get_MMLJLibrary().

mm::MMTorsionLibraryOP core::scoring::ScoringManager::mm_torsion_library_
mutableprivate

Definition at line 253 of file ScoringManager.hh.

Referenced by get_MMTorsionLibrary().

nv::NVlookupOP core::scoring::ScoringManager::NV_lookup_table_
mutableprivate

Definition at line 275 of file ScoringManager.hh.

Referenced by get_NVLookupTable().

geometric_solvation::DatabaseOccSolEneOP core::scoring::ScoringManager::occ_hbond_sol_database_
mutableprivate

Definition at line 249 of file ScoringManager.hh.

Referenced by get_DatabaseOccSolEne().

OmegaTetherOP core::scoring::ScoringManager::omega_
mutableprivate

Definition at line 242 of file ScoringManager.hh.

Referenced by get_OmegaTether().

orbitals::OrbitalsLookupOP core::scoring::ScoringManager::orbitals_lookup_table_
mutableprivate

Definition at line 276 of file ScoringManager.hh.

Referenced by get_OrbitalsLookupTable().

P_AAOP core::scoring::ScoringManager::p_aa_
mutableprivate

Definition at line 264 of file ScoringManager.hh.

Referenced by get_P_AA().

PairEPotentialOP core::scoring::ScoringManager::pairE_potential_
mutableprivate

Definition at line 238 of file ScoringManager.hh.

Referenced by get_PairEPotential().

PoissonBoltzmannPotentialOP core::scoring::ScoringManager::PB_potential_
mutableprivate

Definition at line 272 of file ScoringManager.hh.

Referenced by get_PoissonBoltzmannPotential().

Ramachandran2BOP core::scoring::ScoringManager::rama2b_
mutableprivate

Definition at line 241 of file ScoringManager.hh.

Referenced by get_Ramachandran2B().

RamachandranOP core::scoring::ScoringManager::rama_
mutableprivate

Definition at line 240 of file ScoringManager.hh.

Referenced by get_Ramachandran().

rna::RNA_AtomVDWOP core::scoring::ScoringManager::rna_atom_vdw_
mutableprivate

Definition at line 248 of file ScoringManager.hh.

Referenced by get_RNA_AtomVDW().

rna::chemical_shift::RNA_ChemicalShiftPotential* core::scoring::ScoringManager::rna_chemical_shift_potential_
mutableprivate

Definition at line 263 of file ScoringManager.hh.

Referenced by get_RNA_ChemicalShiftPotential().

rna::RNA_LowResolutionPotentialOP core::scoring::ScoringManager::rna_low_resolution_potential_
mutableprivate

Definition at line 261 of file ScoringManager.hh.

Referenced by get_RNA_LowResolutionPotential().

rna::RNA_TorsionPotentialOP core::scoring::ScoringManager::rna_torsion_potential_
mutableprivate

Definition at line 262 of file ScoringManager.hh.

Referenced by get_RNA_TorsionPotential().

SecondaryStructurePotentialOP core::scoring::ScoringManager::secondary_structure_potential_
mutableprivate

Definition at line 246 of file ScoringManager.hh.

Referenced by get_SecondaryStructurePotential().

SmoothEnvPairPotentialOP core::scoring::ScoringManager::smooth_env_pair_potential_
mutableprivate

Definition at line 244 of file ScoringManager.hh.

Referenced by get_SmoothEnvPairPotential().

UnfoldedStatePotentialOP core::scoring::ScoringManager::unf_state_
mutableprivate

Definition at line 274 of file ScoringManager.hh.

Referenced by get_UnfoldedStatePotential().

WaterAdductHBondPotentialOP core::scoring::ScoringManager::water_adduct_hbond_potential_
mutableprivate

Definition at line 265 of file ScoringManager.hh.

Referenced by get_WaterAdductHBondPotential().

The documentation for this class was generated from the following files:
Generated on Sat Jun 1 2013 12:27:56 for Rosetta 3.5 by   doxygen 1.8.4