| _static_type_name() | protocols::topology_broker::MetalloClaimer | inlinestatic |
| protocols::accept_declined_claim(DofClaim const &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| protocols::topology_broker::JumpClaimer::accept_declined_claim(DofClaim const &was_declined) | protocols::topology_broker::FragmentClaimer | virtual |
| add_constraints(core::pose::Pose &) const | protocols::topology_broker::MetalloClaimer | virtual |
| add_mover(moves::RandomMover &, core::pose::Pose const &, abinitio::StageID, core::scoring::ScoreFunction const &, core::Real) | protocols::topology_broker::TopologyClaimer | virtual |
| adjust_relax_movemap(core::kinematics::MoveMap &) const | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| allow_claim(DofClaim const &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| anchor_chain_ | protocols::topology_broker::MetalloClaimer | private |
| anchor_residue_ | protocols::topology_broker::MetalloClaimer | private |
| broker() const | protocols::topology_broker::TopologyClaimer | inline |
| claim_accepted(DofClaimOP my_claim) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| clone() const | protocols::topology_broker::MetalloClaimer | inlinevirtual |
| finalize_claims(DofClaims &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| FragmentClaimer() | protocols::topology_broker::FragmentClaimer | |
| FragmentClaimer(simple_moves::FragmentMoverOP, std::string mover_tag, weights::AbinitioMoverWeightOP weight) | protocols::topology_broker::FragmentClaimer | |
| FragmentClaimer(simple_moves::FragmentMoverOP) | protocols::topology_broker::FragmentClaimer | |
| FragmentClaimer(FragmentClaimer const &src) | protocols::topology_broker::FragmentClaimer | |
| generate_claims(protocols::topology_broker::DofClaims &dc) | protocols::topology_broker::MetalloClaimer | inlinevirtual |
| generate_sequence_claims(DofClaims &dc) | protocols::topology_broker::MetalloClaimer | inlinevirtual |
| get_frag_mover_ptr() | protocols::topology_broker::FragmentClaimer | protected |
| protocols::get_mover(core::pose::Pose const &) const | protocols::topology_broker::TopologyClaimer | inlineprotectedvirtual |
| protocols::topology_broker::JumpClaimer::get_mover(core::pose::Pose const &) const | protocols::topology_broker::FragmentClaimer | virtual |
| get_sequence_region(std::set< core::Size > &start_region) const | protocols::topology_broker::FragmentClaimer | |
| init_after_reading() | protocols::topology_broker::MetalloClaimer | protectedvirtual |
| init_jumps() | protocols::topology_broker::JumpClaimer | protected |
| initialize_dofs(core::pose::Pose &pose, DofClaims const &init_claims, DofClaims &failed_to_init) | protocols::topology_broker::MetalloClaimer | inlinevirtual |
| initialize_residues(core::pose::Pose &, SequenceClaimOP init_claim, DofClaims &failed_to_init) | protocols::topology_broker::MetalloClaimer | virtual |
| jump_def() | protocols::topology_broker::JumpClaimer | inlineprotected |
| jump_setup_ | protocols::topology_broker::MetalloClaimer | private |
| JumpClaimer() | protocols::topology_broker::JumpClaimer | |
| JumpClaimer(jumping::BaseJumpSetupOP jump_def, std::string const &mover_tag="JumpMove", weights::AbinitioMoverWeightOP weight=NULL) | protocols::topology_broker::JumpClaimer | |
| JumpClaimer(JumpClaimer const &src) | protocols::topology_broker::JumpClaimer | |
| label() const | protocols::topology_broker::TopologyClaimer | inline |
| ligand_ | protocols::topology_broker::MetalloClaimer | private |
| loop_frags(core::kinematics::MoveMap &) const | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| manipulate_cut_bias(utility::vector1< core::Real > &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| MetalloClaimer() | protocols::topology_broker::MetalloClaimer | |
| movemap_ | protocols::topology_broker::FragmentClaimer | protected |
| mover() const | protocols::topology_broker::FragmentClaimer | inlineprotected |
| mover_tag() const | protocols::topology_broker::FragmentClaimer | inline |
| mover_weight() | protocols::topology_broker::TopologyClaimer | inline |
| protocols::new_decoy() | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| protocols::new_decoy(core::pose::Pose const &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| protocols::topology_broker::JumpClaimer::new_decoy(core::pose::Pose const &) | protocols::topology_broker::JumpClaimer | virtual |
| protocols::topology_broker::JumpClaimer::new_decoy() | protocols::topology_broker::JumpClaimer | virtual |
| offset() | protocols::topology_broker::SequenceClaimer | inline |
| passes_filter(core::pose::Pose const &, abinitio::StageID, core::Real, std::ostringstream &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| read(std::istream &) | protocols::topology_broker::TopologyClaimer | virtual |
| read_mover_weight(std::istream &is) | protocols::topology_broker::TopologyClaimer | |
| read_tag(std::string tag, std::istream &) | protocols::topology_broker::MetalloClaimer | protectedvirtual |
| receive_message(ClaimerMessage &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| residue_pair_jump_ | protocols::topology_broker::MetalloClaimer | private |
| resolved_anchor_residue_ | protocols::topology_broker::MetalloClaimer | private |
| SequenceClaimer() | protocols::topology_broker::SequenceClaimer | |
| SequenceClaimer(std::string const &sequence, std::string const &rsd_type_set_identifier, std::string label) | protocols::topology_broker::SequenceClaimer | |
| set_bInitDofs(bool set) | protocols::topology_broker::FragmentClaimer | inline |
| set_broker(TopologyBrokerCAP ptr) | protocols::topology_broker::TopologyClaimer | inline |
| set_claim_right(DofClaim::ClaimRight setting) | protocols::topology_broker::FragmentClaimer | inlineprotected |
| set_defaults() | protocols::topology_broker::MetalloClaimer | protectedvirtual |
| set_jump_def(jumping::BaseJumpSetupOP jump_def) | protocols::topology_broker::JumpClaimer | inlineprotected |
| set_keep_jumps_from_input_pose(bool setting) | protocols::topology_broker::JumpClaimer | inlineprotected |
| set_label(std::string const &str) | protocols::topology_broker::TopologyClaimer | inline |
| set_mover(simple_moves::FragmentMoverOP mover) | protocols::topology_broker::FragmentClaimer | |
| set_mover_tag(std::string const &str) | protocols::topology_broker::FragmentClaimer | |
| set_mover_weight(weights::AbinitioMoverWeightOP wset) | protocols::topology_broker::TopologyClaimer | inline |
| set_sequence(std::string const &str) | protocols::topology_broker::SequenceClaimer | |
| switch_to_fullatom(core::pose::Pose &, utility::vector1< bool >) const | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| TopologyClaimer() | protocols::topology_broker::TopologyClaimer | inline |
| TopologyClaimer(weights::AbinitioMoverWeightOP weight) | protocols::topology_broker::TopologyClaimer | inline |
| type() const | protocols::topology_broker::MetalloClaimer | inlinevirtual |
| ~FragmentClaimer() | protocols::topology_broker::FragmentClaimer | |
| ~JumpClaimer() | protocols::topology_broker::JumpClaimer | |
| ~MetalloClaimer() | protocols::topology_broker::MetalloClaimer | inline |
| ~TopologyClaimer() | protocols::topology_broker::TopologyClaimer | virtual |
1.8.4