core::chemical::SetPolymerConnectAtom Class Reference

set an atom as polymer connection More...

#include <PatchOperation.hh>

Inheritance diagram for core::chemical::SetPolymerConnectAtom:

Collaboration diagram for core::chemical::SetPolymerConnectAtom:

Public Member Functions
	SetPolymerConnectAtom (std::string const &atom_name_in, std::string const &upper_lower_in)
	constructor the type of connection is "LOWER" or "UPPER" More...
bool	apply (ResidueType &rsd) const
	set an atom in ResidueType rsd as a polymer connection atom More...
Public Member Functions inherited from core::chemical::PatchOperation
virtual	~PatchOperation ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Attributes
std::string	atom_name_
	"NONE" to delete the connection by setting its atomno to ZERO More...
int	upper_lower_
	-1 for lower connection, 1 for upper connection More...

Detailed Description

set an atom as polymer connection

Definition at line 116 of file PatchOperation.hh.

Constructor & Destructor Documentation

core::chemical::SetPolymerConnectAtom::SetPolymerConnectAtom ( std::string const &  atom_name_in, std::string const &  upper_lower_in  )

inline

constructor the type of connection is "LOWER" or "UPPER"

Definition at line 120 of file PatchOperation.hh.

References upper_lower_.

Member Function Documentation

bool core::chemical::SetPolymerConnectAtom::apply ( ResidueType &  rsd) const

inlinevirtual

set an atom in ResidueType rsd as a polymer connection atom

Implements core::chemical::PatchOperation.

Definition at line 134 of file PatchOperation.hh.

References atom_name_, core::chemical::ResidueType::has(), core::chemical::ResidueType::name(), core::chemical::ResidueType::set_lower_connect_atom(), core::chemical::ResidueType::set_upper_connect_atom(), core::chemical::TR_PatchOperations(), and upper_lower_.

Member Data Documentation

std::string core::chemical::SetPolymerConnectAtom::atom_name_

private

"NONE" to delete the connection by setting its atomno to ZERO

Definition at line 154 of file PatchOperation.hh.

Referenced by apply().

int core::chemical::SetPolymerConnectAtom::upper_lower_

private

-1 for lower connection, 1 for upper connection

Definition at line 156 of file PatchOperation.hh.

Referenced by apply(), and SetPolymerConnectAtom().

---

The documentation for this class was generated from the following file:

• src/core/chemical/PatchOperation.hh