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TrieCountPairBase.hh
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9 
10 /// @file core/scoring/trie/trie_vs_trie.hh
11 /// @brief
12 /// @author Andrew Leaver-Fay (aleaverfay@gmail.com)
13 
14 #ifndef INCLUDED_core_scoring_trie_TrieCountPairBase_hh
15 #define INCLUDED_core_scoring_trie_TrieCountPairBase_hh
16 
17 // Unit Headers
18 #include <core/scoring/trie/TrieCountPairBase.fwd.hh>
19 
20 // Package Headers
21 #include <core/scoring/trie/RotamerTrie.fwd.hh>
22 #include <core/scoring/trie/RotamerTrieBase.fwd.hh>
23 
24 // Project Headers
25 #include <core/scoring/etable/etrie/EtableAtom.fwd.hh>
26 #include <core/scoring/etable/etrie/CountPairData_1_1.fwd.hh>
27 #include <core/scoring/etable/etrie/CountPairData_1_2.fwd.hh>
28 #include <core/scoring/etable/etrie/CountPairData_1_3.fwd.hh>
29 #include <core/scoring/etable/etrie/CountPairDataGeneric.fwd.hh>
30 #include <core/scoring/etable/EtableEnergy.fwd.hh>
31 
32 #include <core/scoring/hackelec/ElecAtom.fwd.hh>
33 #include <core/scoring/hackelec/HackElecEnergy.fwd.hh>
34 
35 #include <core/scoring/hbonds/hbtrie/HBAtom.fwd.hh>
36 #include <core/scoring/hbonds/hbtrie/HBCPData.fwd.hh>
37 #include <core/scoring/hbonds/HBondEnergy.fwd.hh>
38 
39 #include <core/scoring/methods/MMLJEnergyInter.fwd.hh>
40 #include <core/scoring/mm/mmtrie/MMEnergyTableAtom.fwd.hh>
41 
42 #include <core/types.hh>
43 
44 
45 // Utility Headers
46 #include <utility/pointer/ReferenceCount.hh>
47 #include <utility/vector1.fwd.hh>
48 
49 // ObjexxFCL Headers
50 #include <ObjexxFCL/FArray2D.fwd.hh>
51 
52 namespace core {
53 namespace scoring {
54 namespace trie {
55 
56 class TrieCountPairBase : public utility::pointer::ReferenceCount
57 {
58 public:
59 
60  /// When returning the path distance for two atoms that are separated by more chemical
61  /// bonds than any portion of the score function cares, return this as the equivalent
62  /// of an infinite chemical separation.
63  static const Size INFINITE_SEPARATION = 5;
64 
65  virtual ~TrieCountPairBase();
66  // There are as many as T*K*M*N^2 different type resolution functions for
67  // M different scoring functions with
68  // N different count pair data types, spread over
69  // K different CountPair classes,
70  // for T different Trie-related functions (trie_vs_trie, trie_vs_path, path_vs_path)
71  // Not all M*N^2 combinations are reasonable; many of the K*M*N^2 will cause
72  // a utility::exit call.
73  // Obnoxious, yes, but easier than rewriting the trie_vs_trie algorithm, and
74  // worth* the speedup over polymorphism in the innermost loops
75  //
76  // *speculation. I will reimplement using polymorphism and compare the speed.
77  //
78  // Currently, T = 2, M = 1, N = 3, and K = 3
79 
80  ///---------- TYPE RESOLUTION FUNCTIONS ----------///
81  /// What we have here is triple dispatch. We have to determine the type of
82  /// the first rotamer trie, the type of the second rotamer trie, and finally,
83  /// the type of the count pair function. With the type of all three objects known,
84  /// then the templated version of the trie-vs-trie method may be invoked (or,
85  /// as the compiler sees it, created). There is no good way to do triple dispatch
86  /// (or double dispatch for that matter) in C++. Polymorphism alows single dispatch,
87  /// but nothing further.
88  /// The decision I've made was to have the count pair object the last object to resolve
89  /// its type. The count pair object is simpler than the trie objects, and so this ugly
90  /// type resolution code polutes what is otherwise a trivial class. If it were in
91  /// the RotamerTrie class, it would be uglier. As it is, the second trie to identify its
92  /// type has to have methods for each of the possible types of the first trie that identifies
93  /// its type... its ugly, yes, but not as bad as this code.
94  /// Before this design becomes the standard, I have to answer the following two questions:
95  /// - Does using templates instead of polymorphism save so much time that its worth this uglyness?
96  /// - Does using templates instead of polymorphism increase the size of the executable by an
97  /// acceptably small margin?
98 
99 
100  //////////////////////////// EtableEnergy /////////////////////////////////////
101  virtual
102  void
103  resolve_trie_vs_trie(
104  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
105  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
106  etable::TableLookupEvaluator const & sfxn,
107  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
108  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
109 
110  virtual
111  void
112  resolve_trie_vs_trie(
113  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
114  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
115  etable::TableLookupEvaluator const & sfxn,
116  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
117  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
118 
119  virtual
120  void
121  resolve_trie_vs_trie(
122  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
123  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
124  etable::TableLookupEvaluator const & sfxn,
125  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
126  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
127 
128  virtual
129  void
130  resolve_trie_vs_trie(
131  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
132  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
133  etable::TableLookupEvaluator const & sfxn,
134  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
135  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
136 
137  virtual
138  void
139  resolve_trie_vs_trie(
140  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
141  RotamerTrieBase const & trie2,
142  etable::TableLookupEvaluator const & sfxn,
143  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
144  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
145 
146 
147  virtual
148  void
149  resolve_trie_vs_trie(
150  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
151  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
152  etable::TableLookupEvaluator const & sfxn,
153  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
154  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
155 
156  virtual
157  void
158  resolve_trie_vs_trie(
159  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
160  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
161  etable::TableLookupEvaluator const & sfxn,
162  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
163  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
164 
165  virtual
166  void
167  resolve_trie_vs_trie(
168  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
169  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
170  etable::TableLookupEvaluator const & sfxn,
171  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
172  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
173 
174  virtual
175  void
176  resolve_trie_vs_trie(
177  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
178  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
179  etable::TableLookupEvaluator const & sfxn,
180  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
181  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
182 
183  virtual
184  void
185  resolve_trie_vs_trie(
186  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
187  RotamerTrieBase const & trie2,
188  etable::TableLookupEvaluator const & sfxn,
189  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
190  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
191 
192  virtual
193  void
194  resolve_trie_vs_trie(
195  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
196  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
197  etable::TableLookupEvaluator const & sfxn,
198  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
199  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
200 
201  virtual
202  void
203  resolve_trie_vs_trie(
204  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
205  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
206  etable::TableLookupEvaluator const & sfxn,
207  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
208  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
209 
210  virtual
211  void
212  resolve_trie_vs_trie(
213  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
214  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
215  etable::TableLookupEvaluator const & sfxn,
216  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
217  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
218 
219  virtual
220  void
221  resolve_trie_vs_trie(
222  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
223  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
224  etable::TableLookupEvaluator const & sfxn,
225  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
226  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
227 
228  virtual
229  void
230  resolve_trie_vs_trie(
231  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
232  RotamerTrieBase const & trie2,
233  etable::TableLookupEvaluator const & sfxn,
234  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
235  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
236 
237  virtual
238  void
239  resolve_trie_vs_trie(
240  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
241  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
242  etable::TableLookupEvaluator const & sfxn,
243  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
244  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
245 
246  virtual
247  void
248  resolve_trie_vs_trie(
249  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
250  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
251  etable::TableLookupEvaluator const & sfxn,
252  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
253  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
254 
255  virtual
256  void
257  resolve_trie_vs_trie(
258  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
259  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
260  etable::TableLookupEvaluator const & sfxn,
261  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
262  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
263 
264  virtual
265  void
266  resolve_trie_vs_trie(
267  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
268  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
269  etable::TableLookupEvaluator const & sfxn,
270  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
271  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
272 
273  virtual
274  void
275  resolve_trie_vs_trie(
276  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
277  RotamerTrieBase const & trie2,
278  etable::TableLookupEvaluator const & sfxn,
279  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
280  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
281 
282  virtual
283  void
284  resolve_trie_vs_path(
285  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
286  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
287  etable::TableLookupEvaluator const & sfxn,
288  utility::vector1< core::PackerEnergy > & pair_energy_vector,
289  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
290 
291  virtual
292  void
293  resolve_trie_vs_path(
294  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
295  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
296  etable::TableLookupEvaluator const & sfxn,
297  utility::vector1< core::PackerEnergy > & pair_energy_vector,
298  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
299 
300  virtual
301  void
302  resolve_trie_vs_path(
303  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
304  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
305  etable::TableLookupEvaluator const & sfxn,
306  utility::vector1< core::PackerEnergy > & pair_energy_vector,
307  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
308 
309  virtual
310  void
311  resolve_trie_vs_path(
312  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
313  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
314  etable::TableLookupEvaluator const & sfxn,
315  utility::vector1< core::PackerEnergy > & pair_energy_vector,
316  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
317 
318  virtual
319  void
320  resolve_trie_vs_path(
321  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
322  RotamerTrieBase const & trie2,
323  etable::TableLookupEvaluator const & sfxn,
324  utility::vector1< core::PackerEnergy > & pair_energy_vector,
325  utility::vector1< core::PackerEnergy > & temp_vector);
326 
327 
328  virtual
329  void
330  resolve_trie_vs_path(
331  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
332  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
333  etable::TableLookupEvaluator const & sfxn,
334  utility::vector1< core::PackerEnergy > & pair_energy_vector,
335  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
336 
337  virtual
338  void
339  resolve_trie_vs_path(
340  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
341  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
342  etable::TableLookupEvaluator const & sfxn,
343  utility::vector1< core::PackerEnergy > & pair_energy_vector,
344  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
345 
346  virtual
347  void
348  resolve_trie_vs_path(
349  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
350  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
351  etable::TableLookupEvaluator const & sfxn,
352  utility::vector1< core::PackerEnergy > & pair_energy_vector,
353  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
354 
355  virtual
356  void
357  resolve_trie_vs_path(
358  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
359  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
360  etable::TableLookupEvaluator const & sfxn,
361  utility::vector1< core::PackerEnergy > & pair_energy_vector,
362  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
363 
364  virtual
365  void
366  resolve_trie_vs_path(
367  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
368  RotamerTrieBase const & trie2,
369  etable::TableLookupEvaluator const & sfxn,
370  utility::vector1< core::PackerEnergy > & pair_energy_vector,
371  utility::vector1< core::PackerEnergy > & temp_vector);
372 
373 
374  virtual
375  void
376  resolve_trie_vs_path(
377  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
378  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
379  etable::TableLookupEvaluator const & sfxn,
380  utility::vector1< core::PackerEnergy > & pair_energy_vector,
381  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
382 
383  virtual
384  void
385  resolve_trie_vs_path(
386  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
387  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
388  etable::TableLookupEvaluator const & sfxn,
389  utility::vector1< core::PackerEnergy > & pair_energy_vector,
390  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
391 
392  virtual
393  void
394  resolve_trie_vs_path(
395  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
396  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
397  etable::TableLookupEvaluator const & sfxn,
398  utility::vector1< core::PackerEnergy > & pair_energy_vector,
399  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
400 
401  virtual
402  void
403  resolve_trie_vs_path(
404  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
405  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
406  etable::TableLookupEvaluator const & sfxn,
407  utility::vector1< core::PackerEnergy > & pair_energy_vector,
408  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
409 
410  virtual
411  void
412  resolve_trie_vs_path(
413  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
414  RotamerTrieBase const & trie2,
415  etable::TableLookupEvaluator const & sfxn,
416  utility::vector1< core::PackerEnergy > & pair_energy_vector,
417  utility::vector1< core::PackerEnergy > & temp_vector);
418 
419  virtual
420  void
421  resolve_trie_vs_path(
422  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
423  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
424  etable::TableLookupEvaluator const & sfxn,
425  utility::vector1< core::PackerEnergy > & pair_energy_vector,
426  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
427 
428  virtual
429  void
430  resolve_trie_vs_path(
431  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
432  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
433  etable::TableLookupEvaluator const & sfxn,
434  utility::vector1< core::PackerEnergy > & pair_energy_vector,
435  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
436 
437  virtual
438  void
439  resolve_trie_vs_path(
440  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
441  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
442  etable::TableLookupEvaluator const & sfxn,
443  utility::vector1< core::PackerEnergy > & pair_energy_vector,
444  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
445 
446  virtual
447  void
448  resolve_trie_vs_path(
449  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
450  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
451  etable::TableLookupEvaluator const & sfxn,
452  utility::vector1< core::PackerEnergy > & pair_energy_vector,
453  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
454 
455  virtual
456  void
457  resolve_trie_vs_path(
458  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
459  RotamerTrieBase const & trie2,
460  etable::TableLookupEvaluator const & sfxn,
461  utility::vector1< core::PackerEnergy > & pair_energy_vector,
462  utility::vector1< core::PackerEnergy > & temp_vector);
463 
464 
465  //////////////////////////////////////// EtableEnergy -- analytic evaluation /////////////////////////////////
466  virtual
467  void
468  resolve_trie_vs_trie(
469  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
470  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
471  etable::AnalyticEtableEvaluator const & sfxn,
472  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
473  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
474 
475  virtual
476  void
477  resolve_trie_vs_trie(
478  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
479  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
480  etable::AnalyticEtableEvaluator const & sfxn,
481  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
482  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
483 
484  virtual
485  void
486  resolve_trie_vs_trie(
487  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
488  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
489  etable::AnalyticEtableEvaluator const & sfxn,
490  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
491  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
492 
493  virtual
494  void
495  resolve_trie_vs_trie(
496  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
497  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
498  etable::AnalyticEtableEvaluator const & sfxn,
499  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
500  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
501 
502  virtual
503  void
504  resolve_trie_vs_trie(
505  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
506  RotamerTrieBase const & trie2,
507  etable::AnalyticEtableEvaluator const & sfxn,
508  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
509  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
510 
511  virtual
512  void
513  resolve_trie_vs_trie(
514  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
515  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
516  etable::AnalyticEtableEvaluator const & sfxn,
517  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
518  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
519 
520  virtual
521  void
522  resolve_trie_vs_trie(
523  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
524  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
525  etable::AnalyticEtableEvaluator const & sfxn,
526  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
527  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
528 
529  virtual
530  void
531  resolve_trie_vs_trie(
532  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
533  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
534  etable::AnalyticEtableEvaluator const & sfxn,
535  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
536  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
537 
538  virtual
539  void
540  resolve_trie_vs_trie(
541  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
542  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
543  etable::AnalyticEtableEvaluator const & sfxn,
544  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
545  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
546 
547  virtual
548  void
549  resolve_trie_vs_trie(
550  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
551  RotamerTrieBase const & trie2,
552  etable::AnalyticEtableEvaluator const & sfxn,
553  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
554  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
555 
556  virtual
557  void
558  resolve_trie_vs_trie(
559  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
560  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
561  etable::AnalyticEtableEvaluator const & sfxn,
562  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
563  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
564 
565  virtual
566  void
567  resolve_trie_vs_trie(
568  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
569  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
570  etable::AnalyticEtableEvaluator const & sfxn,
571  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
572  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
573 
574  virtual
575  void
576  resolve_trie_vs_trie(
577  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
578  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
579  etable::AnalyticEtableEvaluator const & sfxn,
580  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
581  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
582 
583  virtual
584  void
585  resolve_trie_vs_trie(
586  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
587  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
588  etable::AnalyticEtableEvaluator const & sfxn,
589  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
590  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
591 
592  virtual
593  void
594  resolve_trie_vs_trie(
595  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
596  RotamerTrieBase const & trie2,
597  etable::AnalyticEtableEvaluator const & sfxn,
598  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
599  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
600 
601  virtual
602  void
603  resolve_trie_vs_trie(
604  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
605  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
606  etable::AnalyticEtableEvaluator const & sfxn,
607  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
608  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
609 
610  virtual
611  void
612  resolve_trie_vs_trie(
613  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
614  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
615  etable::AnalyticEtableEvaluator const & sfxn,
616  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
617  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
618 
619  virtual
620  void
621  resolve_trie_vs_trie(
622  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
623  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
624  etable::AnalyticEtableEvaluator const & sfxn,
625  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
626  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
627 
628  virtual
629  void
630  resolve_trie_vs_trie(
631  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
632  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
633  etable::AnalyticEtableEvaluator const & sfxn,
634  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
635  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
636 
637  virtual
638  void
639  resolve_trie_vs_trie(
640  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
641  RotamerTrieBase const & trie2,
642  etable::AnalyticEtableEvaluator const & sfxn,
643  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
644  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
645 
646  virtual
647  void
648  resolve_trie_vs_path(
649  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
650  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
651  etable::AnalyticEtableEvaluator const & sfxn,
652  utility::vector1< core::PackerEnergy > & pair_energy_vector,
653  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
654 
655  virtual
656  void
657  resolve_trie_vs_path(
658  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
659  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
660  etable::AnalyticEtableEvaluator const & sfxn,
661  utility::vector1< core::PackerEnergy > & pair_energy_vector,
662  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
663 
664  virtual
665  void
666  resolve_trie_vs_path(
667  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
668  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
669  etable::AnalyticEtableEvaluator const & sfxn,
670  utility::vector1< core::PackerEnergy > & pair_energy_vector,
671  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
672 
673  virtual
674  void
675  resolve_trie_vs_path(
676  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
677  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
678  etable::AnalyticEtableEvaluator const & sfxn,
679  utility::vector1< core::PackerEnergy > & pair_energy_vector,
680  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
681 
682  virtual
683  void
684  resolve_trie_vs_path(
685  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
686  RotamerTrieBase const & trie2,
687  etable::AnalyticEtableEvaluator const & sfxn,
688  utility::vector1< core::PackerEnergy > & pair_energy_vector,
689  utility::vector1< core::PackerEnergy > & temp_vector);
690 
691  virtual
692  void
693  resolve_trie_vs_path(
694  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
695  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
696  etable::AnalyticEtableEvaluator const & sfxn,
697  utility::vector1< core::PackerEnergy > & pair_energy_vector,
698  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
699 
700  virtual
701  void
702  resolve_trie_vs_path(
703  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
704  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
705  etable::AnalyticEtableEvaluator const & sfxn,
706  utility::vector1< core::PackerEnergy > & pair_energy_vector,
707  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
708 
709  virtual
710  void
711  resolve_trie_vs_path(
712  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
713  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
714  etable::AnalyticEtableEvaluator const & sfxn,
715  utility::vector1< core::PackerEnergy > & pair_energy_vector,
716  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
717 
718  virtual
719  void
720  resolve_trie_vs_path(
721  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
722  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
723  etable::AnalyticEtableEvaluator const & sfxn,
724  utility::vector1< core::PackerEnergy > & pair_energy_vector,
725  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
726 
727  virtual
728  void
729  resolve_trie_vs_path(
730  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
731  RotamerTrieBase const & trie2,
732  etable::AnalyticEtableEvaluator const & sfxn,
733  utility::vector1< core::PackerEnergy > & pair_energy_vector,
734  utility::vector1< core::PackerEnergy > & temp_vector);
735 
736  virtual
737  void
738  resolve_trie_vs_path(
739  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
740  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
741  etable::AnalyticEtableEvaluator const & sfxn,
742  utility::vector1< core::PackerEnergy > & pair_energy_vector,
743  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
744 
745  virtual
746  void
747  resolve_trie_vs_path(
748  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
749  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
750  etable::AnalyticEtableEvaluator const & sfxn,
751  utility::vector1< core::PackerEnergy > & pair_energy_vector,
752  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
753 
754  virtual
755  void
756  resolve_trie_vs_path(
757  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
758  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
759  etable::AnalyticEtableEvaluator const & sfxn,
760  utility::vector1< core::PackerEnergy > & pair_energy_vector,
761  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
762 
763  virtual
764  void
765  resolve_trie_vs_path(
766  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
767  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
768  etable::AnalyticEtableEvaluator const & sfxn,
769  utility::vector1< core::PackerEnergy > & pair_energy_vector,
770  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
771 
772  virtual
773  void
774  resolve_trie_vs_path(
775  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
776  RotamerTrieBase const & trie2,
777  etable::AnalyticEtableEvaluator const & sfxn,
778  utility::vector1< core::PackerEnergy > & pair_energy_vector,
779  utility::vector1< core::PackerEnergy > & temp_vector);
780 
781  virtual
782  void
783  resolve_trie_vs_path(
784  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
785  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
786  etable::AnalyticEtableEvaluator const & sfxn,
787  utility::vector1< core::PackerEnergy > & pair_energy_vector,
788  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
789 
790  virtual
791  void
792  resolve_trie_vs_path(
793  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
794  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
795  etable::AnalyticEtableEvaluator const & sfxn,
796  utility::vector1< core::PackerEnergy > & pair_energy_vector,
797  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
798 
799  virtual
800  void
801  resolve_trie_vs_path(
802  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
803  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
804  etable::AnalyticEtableEvaluator const & sfxn,
805  utility::vector1< core::PackerEnergy > & pair_energy_vector,
806  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
807 
808  virtual
809  void
810  resolve_trie_vs_path(
811  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
812  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
813  etable::AnalyticEtableEvaluator const & sfxn,
814  utility::vector1< core::PackerEnergy > & pair_energy_vector,
815  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
816 
817  virtual
818  void
819  resolve_trie_vs_path(
820  RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
821  RotamerTrieBase const & trie2,
822  etable::AnalyticEtableEvaluator const & sfxn,
823  utility::vector1< core::PackerEnergy > & pair_energy_vector,
824  utility::vector1< core::PackerEnergy > & temp_vector);
825 
826  //////////////////////////// HBONDS /////////////////////////////////
827  virtual
828  void
829  resolve_trie_vs_trie(
830  RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
831  RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
832  hbonds::HBondEnergy const & sfxn,
833  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
834  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
835 
836 
837  virtual
838  void
839  resolve_trie_vs_path(
840  RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
841  RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
842  hbonds::HBondEnergy const & sfxn,
843  utility::vector1< core::PackerEnergy > & pair_energy_vector,
844  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
845 
846 
847 
848  // called when hbonds and etable tries get confused
849  virtual
850  void
851  resolve_trie_vs_trie(
852  RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
853  RotamerTrieBase const & trie2,
854  hbonds::HBondEnergy const & sfxn,
855  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
856  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
857 
858  virtual
859  void
860  resolve_trie_vs_path(
861  RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
862  RotamerTrieBase const & trie2,
863  hbonds::HBondEnergy const & sfxn,
864  utility::vector1< core::PackerEnergy > & pair_energy_vector,
865  utility::vector1< core::PackerEnergy > & temp_vector);
866 
867  /// Hack Elec Energy
868 
869  virtual
870  void
871  resolve_trie_vs_trie(
872  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
873  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
874  hackelec::HackElecEnergy const & sfxn,
875  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
876  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
877 
878  virtual
879  void
880  resolve_trie_vs_trie(
881  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
882  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
883  hackelec::HackElecEnergy const & sfxn,
884  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
885  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
886 
887  virtual
888  void
889  resolve_trie_vs_trie(
890  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
891  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
892  hackelec::HackElecEnergy const & sfxn,
893  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
894  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
895 
896  virtual
897  void
898  resolve_trie_vs_trie(
899  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
900  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
901  hackelec::HackElecEnergy const & sfxn,
902  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
903  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
904 
905  virtual
906  void
907  resolve_trie_vs_trie(
908  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
909  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
910  hackelec::HackElecEnergy const & sfxn,
911  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
912  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
913 
914  virtual
915  void
916  resolve_trie_vs_trie(
917  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
918  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
919  hackelec::HackElecEnergy const & sfxn,
920  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
921  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
922 
923  virtual
924  void
925  resolve_trie_vs_trie(
926  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
927  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
928  hackelec::HackElecEnergy const & sfxn,
929  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
930  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
931 
932  virtual
933  void
934  resolve_trie_vs_trie(
935  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
936  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
937  hackelec::HackElecEnergy const & sfxn,
938  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
939  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
940 
941  virtual
942  void
943  resolve_trie_vs_trie(
944  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
945  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
946  hackelec::HackElecEnergy const & sfxn,
947  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
948  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
949 
950  virtual
951  void
952  resolve_trie_vs_trie(
953  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
954  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
955  hackelec::HackElecEnergy const & sfxn,
956  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
957  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
958 
959  virtual
960  void
961  resolve_trie_vs_trie(
962  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
963  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
964  hackelec::HackElecEnergy const & sfxn,
965  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
966  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
967 
968  virtual
969  void
970  resolve_trie_vs_trie(
971  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
972  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
973  hackelec::HackElecEnergy const & sfxn,
974  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
975  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
976 
977  virtual
978  void
979  resolve_trie_vs_trie(
980  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
981  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
982  hackelec::HackElecEnergy const & sfxn,
983  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
984  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
985 
986  virtual
987  void
988  resolve_trie_vs_trie(
989  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
990  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
991  hackelec::HackElecEnergy const & sfxn,
992  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
993  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
994 
995  virtual
996  void
997  resolve_trie_vs_trie(
998  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
999  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1000  hackelec::HackElecEnergy const & sfxn,
1001  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1002  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1003 
1004  virtual
1005  void
1006  resolve_trie_vs_trie(
1007  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1008  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1009  hackelec::HackElecEnergy const & sfxn,
1010  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1011  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1012 
1013  virtual
1014  void
1015  resolve_trie_vs_path(
1016  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1017  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1018  hackelec::HackElecEnergy const & sfxn,
1019  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1020  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1021 
1022  virtual
1023  void
1024  resolve_trie_vs_path(
1025  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1026  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1027  hackelec::HackElecEnergy const & sfxn,
1028  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1029  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1030 
1031  virtual
1032  void
1033  resolve_trie_vs_path(
1034  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1035  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1036  hackelec::HackElecEnergy const & sfxn,
1037  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1038  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1039 
1040  virtual
1041  void
1042  resolve_trie_vs_path(
1043  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1044  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1045  hackelec::HackElecEnergy const & sfxn,
1046  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1047  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1048 
1049  virtual
1050  void
1051  resolve_trie_vs_path(
1052  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1053  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1054  hackelec::HackElecEnergy const & sfxn,
1055  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1056  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1057 
1058  virtual
1059  void
1060  resolve_trie_vs_path(
1061  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1062  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1063  hackelec::HackElecEnergy const & sfxn,
1064  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1065  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1066 
1067  virtual
1068  void
1069  resolve_trie_vs_path(
1070  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1071  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1072  hackelec::HackElecEnergy const & sfxn,
1073  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1074  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1075 
1076  virtual
1077  void
1078  resolve_trie_vs_path(
1079  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1080  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1081  hackelec::HackElecEnergy const & sfxn,
1082  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1083  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1084 
1085  virtual
1086  void
1087  resolve_trie_vs_path(
1088  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1089  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1090  hackelec::HackElecEnergy const & sfxn,
1091  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1092  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1093 
1094  virtual
1095  void
1096  resolve_trie_vs_path(
1097  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1098  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1099  hackelec::HackElecEnergy const & sfxn,
1100  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1101  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1102 
1103  virtual
1104  void
1105  resolve_trie_vs_path(
1106  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1107  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1108  hackelec::HackElecEnergy const & sfxn,
1109  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1110  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1111 
1112  virtual
1113  void
1114  resolve_trie_vs_path(
1115  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1116  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1117  hackelec::HackElecEnergy const & sfxn,
1118  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1119  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1120 
1121  virtual
1122  void
1123  resolve_trie_vs_path(
1124  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1125  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1126  hackelec::HackElecEnergy const & sfxn,
1127  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1128  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1129 
1130  virtual
1131  void
1132  resolve_trie_vs_path(
1133  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1134  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1135  hackelec::HackElecEnergy const & sfxn,
1136  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1137  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1138 
1139  virtual
1140  void
1141  resolve_trie_vs_path(
1142  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1143  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1144  hackelec::HackElecEnergy const & sfxn,
1145  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1146  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1147 
1148  virtual
1149  void
1150  resolve_trie_vs_path(
1151  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1152  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1153  hackelec::HackElecEnergy const & sfxn,
1154  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1155  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1156 
1157  // called when hack elec tries get confused with other tries
1158  virtual
1159  void
1160  resolve_trie_vs_trie(
1161  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1162  RotamerTrieBase const & trie2,
1163  hackelec::HackElecEnergy const & sfxn,
1164  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1165  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1166 
1167  virtual
1168  void
1169  resolve_trie_vs_trie(
1170  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1171  RotamerTrieBase const & trie2,
1172  hackelec::HackElecEnergy const & sfxn,
1173  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1174  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1175 
1176  virtual
1177  void
1178  resolve_trie_vs_trie(
1179  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1180  RotamerTrieBase const & trie2,
1181  hackelec::HackElecEnergy const & sfxn,
1182  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1183  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1184 
1185  virtual
1186  void
1187  resolve_trie_vs_trie(
1188  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1189  RotamerTrieBase const & trie2,
1190  hackelec::HackElecEnergy const & sfxn,
1191  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1192  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1193 
1194  virtual
1195  void
1196  resolve_trie_vs_path(
1197  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1198  RotamerTrieBase const & trie2,
1199  hackelec::HackElecEnergy const & sfxn,
1200  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1201  utility::vector1< core::PackerEnergy > & temp_vector);
1202 
1203  virtual
1204  void
1205  resolve_trie_vs_path(
1206  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1207  RotamerTrieBase const & trie2,
1208  hackelec::HackElecEnergy const & sfxn,
1209  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1210  utility::vector1< core::PackerEnergy > & temp_vector);
1211 
1212  virtual
1213  void
1214  resolve_trie_vs_path(
1215  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1216  RotamerTrieBase const & trie2,
1217  hackelec::HackElecEnergy const & sfxn,
1218  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1219  utility::vector1< core::PackerEnergy > & temp_vector);
1220 
1221  virtual
1222  void
1223  resolve_trie_vs_path(
1224  trie::RotamerTrie< hackelec::ElecAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1225  RotamerTrieBase const & trie2,
1226  hackelec::HackElecEnergy const & sfxn,
1227  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1228  utility::vector1< core::PackerEnergy > & temp_vector);
1229 
1230  //////////////////////////// MMLJEnergyInter /////////////////////////////////////
1231  virtual
1232  void
1233  resolve_trie_vs_trie(
1234  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1235  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1236  methods::MMLJEnergyInter const & sfxn,
1237  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1238  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1239 
1240  virtual
1241  void
1242  resolve_trie_vs_trie(
1243  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1244  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1245  methods::MMLJEnergyInter const & sfxn,
1246  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1247  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1248 
1249  virtual
1250  void
1251  resolve_trie_vs_trie(
1252  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1253  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1254  methods::MMLJEnergyInter const & sfxn,
1255  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1256  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1257 
1258  virtual
1259  void
1260  resolve_trie_vs_trie(
1261  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1262  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1263  methods::MMLJEnergyInter const & sfxn,
1264  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1265  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1266 
1267  virtual
1268  void
1269  resolve_trie_vs_trie(
1270  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1271  RotamerTrieBase const & trie2,
1272  methods::MMLJEnergyInter const & sfxn,
1273  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1274  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1275 
1276 
1277  virtual
1278  void
1279  resolve_trie_vs_trie(
1280  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1281  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1282  methods::MMLJEnergyInter const & sfxn,
1283  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1284  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1285 
1286  virtual
1287  void
1288  resolve_trie_vs_trie(
1289  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1290  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1291  methods::MMLJEnergyInter const & sfxn,
1292  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1293  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1294 
1295  virtual
1296  void
1297  resolve_trie_vs_trie(
1298  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1299  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1300  methods::MMLJEnergyInter const & sfxn,
1301  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1302  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1303 
1304  virtual
1305  void
1306  resolve_trie_vs_trie(
1307  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1308  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1309  methods::MMLJEnergyInter const & sfxn,
1310  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1311  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1312 
1313  virtual
1314  void
1315  resolve_trie_vs_trie(
1316  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1317  RotamerTrieBase const & trie2,
1318  methods::MMLJEnergyInter const & sfxn,
1319  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1320  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1321 
1322  virtual
1323  void
1324  resolve_trie_vs_trie(
1325  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1326  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1327  methods::MMLJEnergyInter const & sfxn,
1328  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1329  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1330 
1331  virtual
1332  void
1333  resolve_trie_vs_trie(
1334  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1335  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1336  methods::MMLJEnergyInter const & sfxn,
1337  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1338  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1339 
1340  virtual
1341  void
1342  resolve_trie_vs_trie(
1343  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1344  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1345  methods::MMLJEnergyInter const & sfxn,
1346  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1347  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1348 
1349  virtual
1350  void
1351  resolve_trie_vs_trie(
1352  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1353  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1354  methods::MMLJEnergyInter const & sfxn,
1355  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1356  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1357 
1358  virtual
1359  void
1360  resolve_trie_vs_trie(
1361  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1362  RotamerTrieBase const & trie2,
1363  methods::MMLJEnergyInter const & sfxn,
1364  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1365  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1366 
1367  virtual
1368  void
1369  resolve_trie_vs_trie(
1370  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1371  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1372  methods::MMLJEnergyInter const & sfxn,
1373  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1374  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1375 
1376  virtual
1377  void
1378  resolve_trie_vs_trie(
1379  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1380  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1381  methods::MMLJEnergyInter const & sfxn,
1382  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1383  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1384 
1385  virtual
1386  void
1387  resolve_trie_vs_trie(
1388  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1389  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1390  methods::MMLJEnergyInter const & sfxn,
1391  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1392  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1393 
1394  virtual
1395  void
1396  resolve_trie_vs_trie(
1397  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1398  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1399  methods::MMLJEnergyInter const & sfxn,
1400  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1401  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table) = 0;
1402 
1403  virtual
1404  void
1405  resolve_trie_vs_trie(
1406  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1407  RotamerTrieBase const & trie2,
1408  methods::MMLJEnergyInter const & sfxn,
1409  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1410  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1411 
1412  virtual
1413  void
1414  resolve_trie_vs_path(
1415  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1416  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1417  methods::MMLJEnergyInter const & sfxn,
1418  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1419  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1420 
1421  virtual
1422  void
1423  resolve_trie_vs_path(
1424  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1425  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1426  methods::MMLJEnergyInter const & sfxn,
1427  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1428  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1429 
1430  virtual
1431  void
1432  resolve_trie_vs_path(
1433  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1434  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1435  methods::MMLJEnergyInter const & sfxn,
1436  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1437  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1438 
1439  virtual
1440  void
1441  resolve_trie_vs_path(
1442  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1443  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1444  methods::MMLJEnergyInter const & sfxn,
1445  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1446  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1447 
1448  virtual
1449  void
1450  resolve_trie_vs_path(
1451  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie1,
1452  RotamerTrieBase const & trie2,
1453  methods::MMLJEnergyInter const & sfxn,
1454  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1455  utility::vector1< core::PackerEnergy > & temp_vector);
1456 
1457 
1458  virtual
1459  void
1460  resolve_trie_vs_path(
1461  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1462  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1463  methods::MMLJEnergyInter const & sfxn,
1464  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1465  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1466 
1467  virtual
1468  void
1469  resolve_trie_vs_path(
1470  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1471  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1472  methods::MMLJEnergyInter const & sfxn,
1473  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1474  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1475 
1476  virtual
1477  void
1478  resolve_trie_vs_path(
1479  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1480  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1481  methods::MMLJEnergyInter const & sfxn,
1482  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1483  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1484 
1485  virtual
1486  void
1487  resolve_trie_vs_path(
1488  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1489  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1490  methods::MMLJEnergyInter const & sfxn,
1491  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1492  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1493 
1494  virtual
1495  void
1496  resolve_trie_vs_path(
1497  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie1,
1498  RotamerTrieBase const & trie2,
1499  methods::MMLJEnergyInter const & sfxn,
1500  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1501  utility::vector1< core::PackerEnergy > & temp_vector);
1502 
1503 
1504  virtual
1505  void
1506  resolve_trie_vs_path(
1507  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1508  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1509  methods::MMLJEnergyInter const & sfxn,
1510  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1511  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1512 
1513  virtual
1514  void
1515  resolve_trie_vs_path(
1516  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1517  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1518  methods::MMLJEnergyInter const & sfxn,
1519  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1520  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1521 
1522  virtual
1523  void
1524  resolve_trie_vs_path(
1525  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1526  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1527  methods::MMLJEnergyInter const & sfxn,
1528  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1529  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1530 
1531  virtual
1532  void
1533  resolve_trie_vs_path(
1534  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1535  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1536  methods::MMLJEnergyInter const & sfxn,
1537  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1538  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1539 
1540  virtual
1541  void
1542  resolve_trie_vs_path(
1543  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie1,
1544  RotamerTrieBase const & trie2,
1545  methods::MMLJEnergyInter const & sfxn,
1546  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1547  utility::vector1< core::PackerEnergy > & temp_vector);
1548 
1549  virtual
1550  void
1551  resolve_trie_vs_path(
1552  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1553  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const & trie2,
1554  methods::MMLJEnergyInter const & sfxn,
1555  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1556  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1557 
1558  virtual
1559  void
1560  resolve_trie_vs_path(
1561  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1562  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const & trie2,
1563  methods::MMLJEnergyInter const & sfxn,
1564  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1565  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1566 
1567  virtual
1568  void
1569  resolve_trie_vs_path(
1570  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1571  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const & trie2,
1572  methods::MMLJEnergyInter const & sfxn,
1573  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1574  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1575 
1576  virtual
1577  void
1578  resolve_trie_vs_path(
1579  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1580  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie2,
1581  methods::MMLJEnergyInter const & sfxn,
1582  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1583  utility::vector1< core::PackerEnergy > & temp_vector) = 0;
1584 
1585  virtual
1586  void
1587  resolve_trie_vs_path(
1588  RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairDataGeneric > const & trie1,
1589  RotamerTrieBase const & trie2,
1590  methods::MMLJEnergyInter const & sfxn,
1591  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1592  utility::vector1< core::PackerEnergy > & temp_vector);
1593 
1594 };
1595 
1596 
1597 } // namespace trie
1598 } // namespace scoring
1599 } // namespace core
1600 
1601 #endif
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