core::sequence::SWAligner Class Reference

#include <SWAligner.hh>

Inheritance diagram for core::sequence::SWAligner:

Collaboration diagram for core::sequence::SWAligner:

Public Member Functions
virtual	~SWAligner ()
	dtor More...
virtual SequenceAlignment	align (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
Public Member Functions inherited from core::sequence::Aligner
	Aligner ()
	ctor More...
virtual	~Aligner ()
	dtor More...
void	validate_input (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
SequenceAlignment	traceback (SequenceOP seq_x, SequenceOP seq_y, DP_Matrix matrix, CellOP start)

Detailed Description

Definition at line 27 of file SWAligner.hh.

Constructor & Destructor Documentation

virtual core::sequence::SWAligner::~SWAligner ( )

inlinevirtual

dtor

Definition at line 32 of file SWAligner.hh.

Member Function Documentation

SequenceAlignment core::sequence::SWAligner::align ( SequenceOP  seq_y, SequenceOP  seq_x, ScoringSchemeOP  ss  )

virtual

Implements core::sequence::Aligner.

Definition at line 36 of file ExtendAlignerSW.cc.

References core::sequence::above, core::sequence::diagonal, core::sequence::end, core::sequence::left, and core::sequence::Aligner::traceback().

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The documentation for this class was generated from the following files:

• src/core/sequence/SWAligner.hh
• src/core/sequence/ExtendAlignerSW.cc
• src/core/sequence/SWAligner.cc