#include <ResidueCountFilter.hh>

Inheritance diagram for protocols::simple_filters::ResidueCountFilter:

Collaboration diagram for protocols::simple_filters::ResidueCountFilter:

Public Member Functions
	ResidueCountFilter ()

	ResidueCountFilter (ResidueCountFilter const &src)

virtual	~ResidueCountFilter ()

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

void	parse_my_tag (utility::tag::TagPtr const tag, moves::DataMap &, filters::Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)

core::Size	max_residue_count () const

void	max_residue_count (core::Size value)

bool	enable_max_residue_count () const

void	enable_max_residue_count (bool value)

core::Size	min_residue_count () const

void	min_residue_count (core::Size value)

utility::vector1< std::string >	res_types () const

void	res_types (utility::vector1< std::string > const &res_type)

bool	enable_min_residue_count () const

void	enable_min_residue_count (bool value)

bool	add_residue_type_by_name (core::chemical::ResidueTypeSet const &res_type_set, std::string const &res_type_input)
	Checks whether a residue type is present in the provided residue type set, and if so, adds it to res_types_. More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Size	max_residue_count_

bool	enable_max_residue_count_

core::Size	min_residue_count_

bool	enable_min_residue_count_

utility::vector1< std::string >	res_types_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 32 of file ResidueCountFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::ResidueCountFilter::ResidueCountFilter ( )

Definition at line 42 of file ResidueCountFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::ResidueCountFilter::ResidueCountFilter ( ResidueCountFilter const & src)

Definition at line 50 of file ResidueCountFilter.cc.

protocols::simple_filters::ResidueCountFilter::~ResidueCountFilter ( )

virtual

Definition at line 61 of file ResidueCountFilter.cc.

Member Function Documentation

bool protocols::simple_filters::ResidueCountFilter::add_residue_type_by_name	(	core::chemical::ResidueTypeSet const &	res_type_set,
		std::string const &	res_type_input
	)

Checks whether a residue type is present in the provided residue type set, and if so, adds it to res_types_.

Checks whether a residue type is present in the provided residue type set, and if so, adds it to res_types_ given user specified residue type string, look for residue type name and add it to the list of types to count if it is present in the specified ResidueTypeSet. res_type_set, the residue type set of the input structure res_type_input, the user specified residue type name.

Returns: false if res_type_input doesn't match any residue type names, true otherwise

Definition at line 229 of file ResidueCountFilter.cc.

References core::chemical::ResidueTypeSet::has_name(), and res_types_.

Referenced by parse_my_tag().

bool protocols::simple_filters::ResidueCountFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 111 of file ResidueCountFilter.cc.

References compute(), enable_max_residue_count(), enable_min_residue_count(), max_residue_count(), and min_residue_count().

filters::FilterOP protocols::simple_filters::ResidueCountFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 64 of file ResidueCountFilter.cc.

References ResidueCountFilter().

core::Real protocols::simple_filters::ResidueCountFilter::compute ( core::pose::Pose const & pose) const

Definition at line 141 of file ResidueCountFilter.cc.

References core::conformation::Residue::name(), core::conformation::Residue::name3(), res_types_, core::pose::Pose::residue(), and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

bool protocols::simple_filters::ResidueCountFilter::enable_max_residue_count ( ) const

Definition at line 187 of file ResidueCountFilter.cc.

References enable_max_residue_count_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::ResidueCountFilter::enable_max_residue_count ( bool value)

Definition at line 192 of file ResidueCountFilter.cc.

References enable_max_residue_count_.

bool protocols::simple_filters::ResidueCountFilter::enable_min_residue_count ( ) const

Definition at line 211 of file ResidueCountFilter.cc.

References enable_min_residue_count_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::ResidueCountFilter::enable_min_residue_count ( bool value)

Definition at line 216 of file ResidueCountFilter.cc.

References enable_min_residue_count_.

filters::FilterOP protocols::simple_filters::ResidueCountFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 69 of file ResidueCountFilter.cc.

References ResidueCountFilter().

core::Size protocols::simple_filters::ResidueCountFilter::max_residue_count ( ) const

Definition at line 160 of file ResidueCountFilter.cc.

References max_residue_count_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::ResidueCountFilter::max_residue_count ( core::Size value)

Definition at line 165 of file ResidueCountFilter.cc.

References max_residue_count_.

core::Size protocols::simple_filters::ResidueCountFilter::min_residue_count ( ) const

Definition at line 199 of file ResidueCountFilter.cc.

References min_residue_count_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::ResidueCountFilter::min_residue_count ( core::Size value)

Definition at line 204 of file ResidueCountFilter.cc.

References min_residue_count_.

void protocols::simple_filters::ResidueCountFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		moves::DataMap &	,
		filters::Filters_map const &	,
		moves::Movers_map const &	,
		core::pose::Pose const &	pose
	)