#include <ResidueTotalScoresFeatures.hh>

Inheritance diagram for protocols::features::ResidueTotalScoresFeatures:

Collaboration diagram for protocols::features::ResidueTotalScoresFeatures:

Public Member Functions
	ResidueTotalScoresFeatures ()

	ResidueTotalScoresFeatures (core::scoring::ScoreFunctionOP scfxn)

	ResidueTotalScoresFeatures (ResidueTotalScoresFeatures const &src)

virtual	~ResidueTotalScoresFeatures ()

std::string	type_name () const
	return string with class name More...

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &)

virtual void	delete_record (boost::uuids::uuid, utility::sql_database::sessionOP)

Private Member Functions
void	write_residue_total_scores_table_schema (utility::sql_database::sessionOP db_session) const
	generate the residue_total_scores_1b table schema More...

void	insert_residue_total_scores_rows (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid const struct_id, utility::sql_database::sessionOP db_session) const
	generate the residue_total_scores_1b table schema More...

Private Attributes
core::scoring::ScoreFunctionOP	scfxn_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 43 of file ResidueTotalScoresFeatures.hh.

Constructor & Destructor Documentation

protocols::features::ResidueTotalScoresFeatures::ResidueTotalScoresFeatures ( )

Definition at line 80 of file ResidueTotalScoresFeatures.cc.

protocols::features::ResidueTotalScoresFeatures::ResidueTotalScoresFeatures ( core::scoring::ScoreFunctionOP scfxn)

protocols::features::ResidueTotalScoresFeatures::ResidueTotalScoresFeatures ( ResidueTotalScoresFeatures const & src)

Definition at line 89 of file ResidueTotalScoresFeatures.cc.

protocols::features::ResidueTotalScoresFeatures::~ResidueTotalScoresFeatures ( )

virtual

Definition at line 94 of file ResidueTotalScoresFeatures.cc.

Member Function Documentation

utility::vector1< string > protocols::features::ResidueTotalScoresFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 138 of file ResidueTotalScoresFeatures.cc.

void protocols::features::ResidueTotalScoresFeatures::insert_residue_total_scores_rows	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid const	struct_id,
		utility::sql_database::sessionOP	db_session
	)		const

private

generate the residue_total_scores_1b table schema

Definition at line 180 of file ResidueTotalScoresFeatures.cc.

References core::pose::Pose::energies(), core::scoring::Energies::residue_total_energy(), scfxn_, core::pose::Pose::total_residue(), and protocols::features::TR().

Referenced by report_features().

void protocols::features::ResidueTotalScoresFeatures::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 146 of file ResidueTotalScoresFeatures.cc.

References protocols::moves::DataMap::get(), scfxn_, and type_name().

Size protocols::features::ResidueTotalScoresFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)