core::scoring::MembraneEmbed Class Reference

#include <MembranePotential.hh>

Inheritance diagram for core::scoring::MembraneEmbed:

Collaboration diagram for core::scoring::MembraneEmbed:

Public Member Functions
	MembraneEmbed ()
	MembraneEmbed (MembraneEmbed const &src)
basic::datacache::CacheableDataOP	clone () const
Size	size () const
Real &	depth (Size const seqpos)
void	set_normal (Vector const &v)
void	set_center (Vector const &v)
void	set_penalty (Real const &p)
Real	depth (Size const seqpos) const
bool &	spanning ()
bool	spanning () const
bool	calculated () const
bool &	calculated ()
Vector const &	normal () const
Vector const &	center () const
Real const &	penalty () const
void	initialize (pose::Pose const &pose)

Private Attributes
utility::vector1< Real >	depth_
Vector	normal_
Vector	center_
bool	calculated_
bool	spanning_
Size	tm_projection_
Real	penalty_

Detailed Description

Definition at line 49 of file MembranePotential.hh.

Constructor & Destructor Documentation

core::scoring::MembraneEmbed::MembraneEmbed ( )

inline

Definition at line 52 of file MembranePotential.hh.

Referenced by clone().

core::scoring::MembraneEmbed::MembraneEmbed

(

MembraneEmbed const &

src)

Definition at line 69 of file MembranePotential.cc.

References calculated_, center_, depth_, normal_, penalty_, and spanning_.

Member Function Documentation

bool core::scoring::MembraneEmbed::calculated ( ) const

inline

Definition at line 107 of file MembranePotential.hh.

References calculated_.

Referenced by core::scoring::Membrane_FAPotential::compute_fa_projection(), core::scoring::MembranePotential::compute_membrane_embedding(), core::scoring::MembranePotential::finalize(), and core::scoring::Membrane_FAPotential::finalize().

bool& core::scoring::MembraneEmbed::calculated ( )

inline

Definition at line 113 of file MembranePotential.hh.

References calculated_.

Vector const& core::scoring::MembraneEmbed::center ( ) const

inline

Definition at line 125 of file MembranePotential.hh.

References center_.

Referenced by core::scoring::hbonds::HBondEnergy::setup_for_packing(), and core::scoring::hbonds::HBondEnergy::setup_for_scoring().

basic::datacache::CacheableDataOP core::scoring::MembraneEmbed::clone ( ) const

inline

Definition at line 56 of file MembranePotential.hh.

References MembraneEmbed().

Real& core::scoring::MembraneEmbed::depth ( Size const  seqpos)

inline

Definition at line 67 of file MembranePotential.hh.

References depth_.

Referenced by core::scoring::MembranePotential::compute_membrane_embedding().

Real core::scoring::MembraneEmbed::depth ( Size const  seqpos) const

inline

Definition at line 89 of file MembranePotential.hh.

References depth_.

void core::scoring::MembraneEmbed::initialize

(

pose::Pose const &

pose)

Definition at line 81 of file MembranePotential.cc.

References center_, depth_, normal_, and core::pose::Pose::total_residue().

Referenced by core::scoring::MembranePotential::compute_membrane_embedding().

Vector const& core::scoring::MembraneEmbed::normal ( ) const

inline

Definition at line 119 of file MembranePotential.hh.

References normal_.

Referenced by core::scoring::ChemicalShiftAnisotropy::compute_csascore(), core::scoring::DipolarCoupling::compute_dcscore(), core::scoring::hbonds::HBondEnergy::setup_for_packing(), and core::scoring::hbonds::HBondEnergy::setup_for_scoring().

Real const& core::scoring::MembraneEmbed::penalty ( ) const

inline

Definition at line 131 of file MembranePotential.hh.

References penalty_.

void core::scoring::MembraneEmbed::set_center ( Vector const &  v)

inline

Definition at line 78 of file MembranePotential.hh.

References center_.

Referenced by core::scoring::MembranePotential::compute_membrane_embedding().

void core::scoring::MembraneEmbed::set_normal ( Vector const &  v)

inline

Definition at line 73 of file MembranePotential.hh.

References normal_.

Referenced by core::scoring::MembranePotential::compute_membrane_embedding().

void core::scoring::MembraneEmbed::set_penalty ( Real const &  p)

inline

Definition at line 83 of file MembranePotential.hh.

References penalty_.

Size core::scoring::MembraneEmbed::size ( ) const

inline

Definition at line 62 of file MembranePotential.hh.

References depth_.

bool& core::scoring::MembraneEmbed::spanning ( )

inline

Definition at line 95 of file MembranePotential.hh.

References spanning_.

Referenced by core::scoring::MembranePotential::compute_membrane_embedding().

bool core::scoring::MembraneEmbed::spanning ( ) const

inline

Definition at line 101 of file MembranePotential.hh.

References spanning_.

Member Data Documentation

bool core::scoring::MembraneEmbed::calculated_

private

Definition at line 143 of file MembranePotential.hh.

Referenced by calculated(), and MembraneEmbed().

Vector core::scoring::MembraneEmbed::center_

private

Definition at line 142 of file MembranePotential.hh.

Referenced by center(), initialize(), MembraneEmbed(), and set_center().

utility::vector1< Real > core::scoring::MembraneEmbed::depth_

private

Definition at line 140 of file MembranePotential.hh.

Referenced by depth(), initialize(), MembraneEmbed(), and size().

Vector core::scoring::MembraneEmbed::normal_

private

Definition at line 141 of file MembranePotential.hh.

Referenced by initialize(), MembraneEmbed(), normal(), and set_normal().

Real core::scoring::MembraneEmbed::penalty_

private

Definition at line 146 of file MembranePotential.hh.

Referenced by MembraneEmbed(), penalty(), and set_penalty().

bool core::scoring::MembraneEmbed::spanning_

private

Definition at line 144 of file MembranePotential.hh.

Referenced by MembraneEmbed(), and spanning().

Size core::scoring::MembraneEmbed::tm_projection_

private

Definition at line 145 of file MembranePotential.hh.

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The documentation for this class was generated from the following files:

• src/core/scoring/MembranePotential.hh
• src/core/scoring/MembranePotential.cc