#include <ResidueKinWriter.hh>

Inheritance diagram for core::conformation::ResidueKinWriter:

Collaboration diagram for core::conformation::ResidueKinWriter:

Public Types
typedef core::Size	Size

Public Member Functions
	ResidueKinWriter ()

virtual	~ResidueKinWriter ()

void	write_kin_header (std::ostream &ostr, core::conformation::Residue const &rsd, core::Size atom_to_center_on=0, core::Size which_kin=1) const
	write the header for the kinemage to center on this residue More...

void	write_rsd_coords (std::ostream &ostr, core::conformation::Residue const &rsd, bool is_instance=false) const
	Write out the coordinates for a particular residue; the kinemage tag is assumed to have been writen already. More...

void	master (std::string const &setting)

void	dominant (bool setting)

void	animate (bool setting)

void	group (bool setting)

void	write_virtual_atoms (bool setting)

void	write_hydrogens (bool setting)
	Calling this function with the setting "true", turns on polar, apolar, and backbone hydrogen writing. Calling this function with the setting "false", turns off polar, apolar, and backbone hydrogen writing. More...

void	write_apolar_hydrogens (bool setting)

void	write_polar_hydrogens (bool setting)

void	write_backbone_hydrogens (bool setting)

Private Attributes
std::string	master_

bool	dominant_

bool	animate_

bool	group_

bool	write_apolar_hydrogens_

bool	write_polar_hydrogens_

bool	write_backbone_hydrogens_

bool	write_virtual_atoms_

Detailed Description

Definition at line 43 of file ResidueKinWriter.hh.

Member Typedef Documentation

typedef core::Size core::conformation::ResidueKinWriter::Size

Definition at line 46 of file ResidueKinWriter.hh.

Constructor & Destructor Documentation

core::conformation::ResidueKinWriter::ResidueKinWriter ( )

Definition at line 102 of file ResidueKinWriter.cc.

core::conformation::ResidueKinWriter::~ResidueKinWriter ( )

virtual

Definition at line 113 of file ResidueKinWriter.cc.

Member Function Documentation

void core::conformation::ResidueKinWriter::animate ( bool setting)

Definition at line 194 of file ResidueKinWriter.cc.

References animate_.

Referenced by core::conformation::ConformationKinWriter::write_coords().

void core::conformation::ResidueKinWriter::dominant ( bool setting)

Definition at line 193 of file ResidueKinWriter.cc.

References dominant_.

void core::conformation::ResidueKinWriter::group ( bool setting)

Definition at line 195 of file ResidueKinWriter.cc.

References group_.

void core::conformation::ResidueKinWriter::master ( std::string const & setting)

Definition at line 196 of file ResidueKinWriter.cc.

References master_.

void core::conformation::ResidueKinWriter::write_apolar_hydrogens ( bool setting)

Definition at line 204 of file ResidueKinWriter.cc.

References write_apolar_hydrogens_.

Referenced by write_hydrogens().

void core::conformation::ResidueKinWriter::write_backbone_hydrogens ( bool setting)

Definition at line 206 of file ResidueKinWriter.cc.

References write_backbone_hydrogens_.

Referenced by write_hydrogens().

void core::conformation::ResidueKinWriter::write_hydrogens ( bool setting)

Calling this function with the setting "true", turns on polar, apolar, and backbone hydrogen writing. Calling this function with the setting "false", turns off polar, apolar, and backbone hydrogen writing.

Definition at line 198 of file ResidueKinWriter.cc.

References write_apolar_hydrogens(), write_backbone_hydrogens(), and write_polar_hydrogens().

void core::conformation::ResidueKinWriter::write_kin_header	(	std::ostream &	ostr,
		core::conformation::Residue const &	rsd,
		core::Size	atom_to_center_on = `0`,
		core::Size	which_kin = `1`
	)		const

write the header for the kinemage to center on this residue

Definition at line 115 of file ResidueKinWriter.cc.

References core::conformation::Residue::nbr_atom(), core::conformation::write_kinemage_header(), and core::conformation::Residue::xyz().

void core::conformation::ResidueKinWriter::write_polar_hydrogens ( bool setting)

Definition at line 205 of file ResidueKinWriter.cc.

References write_polar_hydrogens_.

Referenced by write_hydrogens().

void core::conformation::ResidueKinWriter::write_rsd_coords	(	std::ostream &	ostr,
		core::conformation::Residue const &	rsd,
		bool	is_instance = `false`
	)		const

Write out the coordinates for a particular residue; the kinemage tag is assumed to have been writen already.

If you're drawing multiple instances of a single rotamer, use the "instance" flag to point to the coordinates already written out in this file. This creates a smaller output file.

Definition at line 136 of file ResidueKinWriter.cc.