Rosetta 3.5
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Types | Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::fldsgn::topology::SheetFoldTypeManager Class Reference

#include <SheetFoldTypeManager.hh>

Collaboration diagram for protocols::fldsgn::topology::SheetFoldTypeManager:
Collaboration graph
[legend]

Public Types

typedef std::string String
 

Public Member Functions

 SheetFoldTypeManager ()
 
SheetFoldType foldtype_from_name (std::string const &name)
 give a string name of SheetFoldType and return its enum type More...
 
std::string name_from_foldtype (SheetFoldType score_type)
 give a SheetFoldType and return its string name More...
 
bool is_foldtype (std::string const &name)
 check whether the string name of strand pairings is in SheetFoldType or not More...
 
SheetFoldType foldtype_from_spairs (std::string const &spairs)
 give a string of strand_pairings and return its enum type More...
 
std::string spairs_from_foldtype (SheetFoldType foldtype)
 give a SheetFoldType and return its string of strand_pairings More...
 
bool is_sparis_foldtype (std::string const &spairs)
 check whether the string spairs of strand_pairings is in SheetFoldType or not More...
 

Private Member Functions

void initialize ()
 
void setup_foldtype_names ()
 initialize the SheetFoldType name vector and map More...
 
void setup_foldtype_strand_pairings ()
 initialize the map of strand pairings and SheetFoldType More...
 

Private Attributes

bool initialized_
 
std::map< String, SheetFoldType > name2foldtype_
 
utility::vector1< String > foldtype2name_
 
std::map< String, SheetFoldType > spairs2foldtype_
 
utility::vector1< String > foldtype2spairs_
 

Detailed Description

Definition at line 107 of file SheetFoldTypeManager.hh.

Member Typedef Documentation

typedef std::string protocols::fldsgn::topology::SheetFoldTypeManager::String

Definition at line 111 of file SheetFoldTypeManager.hh.

Constructor & Destructor Documentation

protocols::fldsgn::topology::SheetFoldTypeManager::SheetFoldTypeManager ( )

Definition at line 30 of file SheetFoldTypeManager.cc.

References initialize().

Member Function Documentation

SheetFoldType protocols::fldsgn::topology::SheetFoldTypeManager::foldtype_from_name ( std::string const &  name)

give a string name of SheetFoldType and return its enum type

Definition at line 123 of file SheetFoldTypeManager.cc.

References initialize(), initialized_, and name2foldtype_.

SheetFoldType protocols::fldsgn::topology::SheetFoldTypeManager::foldtype_from_spairs ( std::string const &  spairs)

give a string of strand_pairings and return its enum type

Definition at line 222 of file SheetFoldTypeManager.cc.

References initialize(), initialized_, spairs2foldtype_, and protocols::fldsgn::topology::UNKNOWN.

void protocols::fldsgn::topology::SheetFoldTypeManager::initialize ( )
private

Definition at line 37 of file SheetFoldTypeManager.cc.

References initialized_, setup_foldtype_names(), and setup_foldtype_strand_pairings().

Referenced by foldtype_from_name(), foldtype_from_spairs(), is_foldtype(), is_sparis_foldtype(), name_from_foldtype(), SheetFoldTypeManager(), and spairs_from_foldtype().

bool protocols::fldsgn::topology::SheetFoldTypeManager::is_foldtype ( std::string const &  name)

check whether the string name of strand pairings is in SheetFoldType or not

Definition at line 143 of file SheetFoldTypeManager.cc.

References initialize(), initialized_, and name2foldtype_.

bool protocols::fldsgn::topology::SheetFoldTypeManager::is_sparis_foldtype ( std::string const &  spairs)

check whether the string spairs of strand_pairings is in SheetFoldType or not

Definition at line 244 of file SheetFoldTypeManager.cc.

References initialize(), initialized_, and spairs2foldtype_.

std::string protocols::fldsgn::topology::SheetFoldTypeManager::name_from_foldtype ( SheetFoldType  score_type)

give a SheetFoldType and return its string name

Definition at line 135 of file SheetFoldTypeManager.cc.

References foldtype2name_, initialize(), and initialized_.

void protocols::fldsgn::topology::SheetFoldTypeManager::setup_foldtype_names ( )
private

initialize the SheetFoldType name vector and map

Definition at line 46 of file SheetFoldTypeManager.cc.

References protocols::fldsgn::topology::BAB_CFr, protocols::fldsgn::topology::BABx1, protocols::fldsgn::topology::BABx2, protocols::fldsgn::topology::BABx3, protocols::fldsgn::topology::BEFr, protocols::fldsgn::topology::BFr, protocols::fldsgn::topology::CDFr, protocols::fldsgn::topology::CFr, protocols::fldsgn::topology::DFr, protocols::fldsgn::topology::DFr_BAB, protocols::fldsgn::topology::DFr_HPN, protocols::fldsgn::topology::EFr, protocols::fldsgn::topology::Fd_like, protocols::fldsgn::topology::Flavodoxin, foldtype2name_, protocols::fldsgn::topology::HPN_CFr, protocols::fldsgn::topology::n_fold_types, name2foldtype_, protocols::fldsgn::topology::NO_STRANDS, protocols::fldsgn::topology::PG_like, protocols::fldsgn::topology::Ploop2x3, protocols::fldsgn::topology::Ploop3x3, protocols::fldsgn::topology::RFd_like, protocols::fldsgn::topology::RNAseH, protocols::fldsgn::topology::RosI, protocols::fldsgn::topology::RosO, protocols::fldsgn::topology::Rsmn2x2, protocols::fldsgn::topology::Rsmn3x3, protocols::fldsgn::topology::Rsmn3x3_Half, protocols::fldsgn::topology::Thio, protocols::fldsgn::topology::Thioredoxin, protocols::fldsgn::topology::Top7, protocols::fldsgn::topology::UNFOLD, and protocols::fldsgn::topology::UNKNOWN.

Referenced by initialize().

void protocols::fldsgn::topology::SheetFoldTypeManager::setup_foldtype_strand_pairings ( )
private

initialize the map of strand pairings and SheetFoldType

Definition at line 152 of file SheetFoldTypeManager.cc.

References protocols::fldsgn::topology::BAB_CFr, protocols::fldsgn::topology::BABx1, protocols::fldsgn::topology::BABx2, protocols::fldsgn::topology::BABx3, protocols::fldsgn::topology::BEFr, protocols::fldsgn::topology::BFr, protocols::fldsgn::topology::CDFr, protocols::fldsgn::topology::CFr, protocols::fldsgn::topology::DFr, protocols::fldsgn::topology::DFr_BAB, protocols::fldsgn::topology::DFr_HPN, protocols::fldsgn::topology::EFr, protocols::fldsgn::topology::Fd_like, protocols::fldsgn::topology::Flavodoxin, foldtype2spairs_, protocols::fldsgn::topology::HPN_CFr, protocols::fldsgn::topology::n_fold_types, protocols::fldsgn::topology::NO_STRANDS, protocols::fldsgn::topology::PG_like, protocols::fldsgn::topology::Ploop2x3, protocols::fldsgn::topology::Ploop3x3, protocols::fldsgn::topology::RFd_like, protocols::fldsgn::topology::RNAseH, protocols::fldsgn::topology::RosI, protocols::fldsgn::topology::RosO, protocols::fldsgn::topology::Rsmn2x2, protocols::fldsgn::topology::Rsmn3x3, protocols::fldsgn::topology::Rsmn3x3_Half, spairs2foldtype_, protocols::fldsgn::topology::Thio, protocols::fldsgn::topology::Thioredoxin, protocols::fldsgn::topology::Top7, protocols::fldsgn::topology::UNFOLD, and protocols::fldsgn::topology::UNKNOWN.

Referenced by initialize().

std::string protocols::fldsgn::topology::SheetFoldTypeManager::spairs_from_foldtype ( SheetFoldType  foldtype)

give a SheetFoldType and return its string of strand_pairings

Definition at line 236 of file SheetFoldTypeManager.cc.

References foldtype2spairs_, initialize(), and initialized_.

Member Data Documentation

utility::vector1< String > protocols::fldsgn::topology::SheetFoldTypeManager::foldtype2name_
private

Definition at line 163 of file SheetFoldTypeManager.hh.

Referenced by name_from_foldtype(), and setup_foldtype_names().

utility::vector1< String > protocols::fldsgn::topology::SheetFoldTypeManager::foldtype2spairs_
private

Definition at line 166 of file SheetFoldTypeManager.hh.

Referenced by setup_foldtype_strand_pairings(), and spairs_from_foldtype().

bool protocols::fldsgn::topology::SheetFoldTypeManager::initialized_
private

Definition at line 160 of file SheetFoldTypeManager.hh.

Referenced by foldtype_from_name(), foldtype_from_spairs(), initialize(), is_foldtype(), is_sparis_foldtype(), name_from_foldtype(), and spairs_from_foldtype().

std::map< String, SheetFoldType > protocols::fldsgn::topology::SheetFoldTypeManager::name2foldtype_
private

Definition at line 162 of file SheetFoldTypeManager.hh.

Referenced by foldtype_from_name(), is_foldtype(), and setup_foldtype_names().

std::map< String, SheetFoldType > protocols::fldsgn::topology::SheetFoldTypeManager::spairs2foldtype_
private

Definition at line 165 of file SheetFoldTypeManager.hh.

Referenced by foldtype_from_spairs(), is_sparis_foldtype(), and setup_foldtype_strand_pairings().

The documentation for this class was generated from the following files:
Generated on Sat Jun 1 2013 12:37:02 for Rosetta 3.5 by   doxygen 1.8.4