#include <StructureFeatures.hh>

Inheritance diagram for protocols::features::StructureFeatures:

Collaboration diagram for protocols::features::StructureFeatures:

Public Member Functions
	StructureFeatures ()

	StructureFeatures (StructureFeatures const &src)

virtual	~StructureFeatures ()

std::string	type_name () const
	return string with class name More...

virtual void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

boost::uuids::uuid	report_features (utility::vector1< bool > const &relevant_residues, core::Size batch_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose use More...

core::Size	report_features (core::pose::Pose const &, utility::vector1< bool > const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose More...

boost::uuids::uuid	report_features (utility::vector1< bool > const &relevant_residues, core::Size batch_id, utility::sql_database::sessionOP db_session, std::string const &tag, std::string const &input_tag)
	collect all the feature data for the pose use This version allows the tag and the input tag to be specificed More...

void	mark_structure_as_sampled (core::Size batch_id, std::string const &tag, std::string const &input_tag, utility::sql_database::sessionOP db_session)

void	delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)

void	load_into_pose (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

void	load_tag (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

boost::uuids::uuid	get_struct_id (utility::sql_database::sessionOP db_session, std::string const &tag, core::Size const &protocol_id)

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 38 of file StructureFeatures.hh.

Constructor & Destructor Documentation

protocols::features::StructureFeatures::StructureFeatures ( )

Definition at line 82 of file StructureFeatures.cc.

protocols::features::StructureFeatures::StructureFeatures ( StructureFeatures const & src)

Definition at line 84 of file StructureFeatures.cc.

protocols::features::StructureFeatures::~StructureFeatures ( )

virtual

Definition at line 88 of file StructureFeatures.cc.

Member Function Documentation

void protocols::features::StructureFeatures::delete_record	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 203 of file StructureFeatures.cc.

utility::vector1< std::string > protocols::features::StructureFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 130 of file StructureFeatures.cc.

boost::uuids::uuid protocols::features::StructureFeatures::get_struct_id	(	utility::sql_database::sessionOP	db_session,
		std::string const &	tag,
		core::Size const &	protocol_id
	)

Definition at line 255 of file StructureFeatures.cc.

References protocols::pack_daemon::error_message.

void protocols::features::StructureFeatures::load_into_pose	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 216 of file StructureFeatures.cc.

References load_tag().

void protocols::features::StructureFeatures::load_tag	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

Definition at line 225 of file StructureFeatures.cc.

References protocols::pack_daemon::error_message, and core::pose::tag_into_pose().

Referenced by load_into_pose().

void protocols::features::StructureFeatures::mark_structure_as_sampled	(	core::Size	batch_id,
		std::string const &	tag,
		std::string const &	input_tag,
		utility::sql_database::sessionOP	db_session
	)

Definition at line 183 of file StructureFeatures.cc.

boost::uuids::uuid protocols::features::StructureFeatures::report_features	(	utility::vector1< bool > const &	relevant_residues,
		core::Size	batch_id,
		utility::sql_database::sessionOP	db_session
	)

collect all the feature data for the pose use

core::Size protocols::features::StructureFeatures::report_features	(	core::pose::Pose const &	,
		utility::vector1< bool > const &	,
		boost::uuids::uuid	,
		utility::sql_database::sessionOP
	)

inlinevirtual

collect all the feature data for the pose

Implements protocols::features::FeaturesReporter.

Definition at line 69 of file StructureFeatures.hh.

boost::uuids::uuid protocols::features::StructureFeatures::report_features	(	utility::vector1< bool > const &	relevant_residues,
		core::Size	batch_id,
		utility::sql_database::sessionOP	db_session,
		std::string const &	tag,
		std::string const &	input_tag
	)

collect all the feature data for the pose use This version allows the tag and the input tag to be specificed

string protocols::features::StructureFeatures::type_name ( ) const

virtual

return string with class name

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 91 of file StructureFeatures.cc.

void protocols::features::StructureFeatures::write_schema_to_db ( utility::sql_database::sessionOP db_session) const

virtual

generate the table schemas and write them to the database

Implements protocols::features::FeaturesReporter.

Definition at line 94 of file StructureFeatures.cc.

The documentation for this class was generated from the following files:

src/protocols/features/StructureFeatures.hh
src/protocols/features/StructureFeatures.cc

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation