BFactor score counts identical residues. More...

#include <BFactor.hh>

Inheritance diagram for protocols::frag_picker::scores::BFactor:

Collaboration diagram for protocols::frag_picker::scores::BFactor:

Public Member Functions
	BFactor (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string &fastaQuerySequence)

bool	score (FragmentCandidateOP f, FragmentScoreMapOP empty_map)

bool	describe_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out)
	prints a detailed explanation how a fragment score has been computed More...

Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)

std::string &	get_score_name ()
	Returns a name of this scoring method. More...

Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...

void	set_id (Size id)
	Sets a new integer index for this scoring method. More...

Size	get_priority ()
	Returns a priority of this scoring method. More...

Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...

bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...

void	set_min_allowed_score (Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
Size	id_

Size	priority_

std::string	name_

Real	lowest_acceptable_value_

bool	use_lowest_

Detailed Description

BFactor score counts identical residues.

Detailed: Resulting score is the number of identical residues: on corresponding positions in a vall fragment and a query sequence

Definition at line 35 of file BFactor.hh.

Constructor & Destructor Documentation

protocols::frag_picker::scores::BFactor::BFactor	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		std::string &	fastaQuerySequence
	)

inline

Definition at line 38 of file BFactor.hh.

bool protocols::frag_picker::scores::BFactor::describe_score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map,
		std::ostream &	out
	)

prints a detailed explanation how a fragment score has been computed

Detailed: besides extensive output, the method should return the same result as score()

Definition at line 48 of file BFactor.cc.

bool protocols::frag_picker::scores::BFactor::score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)

virtual

Definition at line 31 of file BFactor.cc.

Real protocols::frag_picker::scores::BFactor::minScoreAllowed_

private

Definition at line 52 of file BFactor.hh.

std::string& protocols::frag_picker::scores::BFactor::query_

private

Definition at line 53 of file BFactor.hh.

The documentation for this class was generated from the following files: