| add_atom(int molecule, Atom &atom) | core::scoring::sc::MolecularSurfaceCalculator | |
| AddDot(int const molecule, int const type, Vec3 const coor, ScValue const area, Vec3 const pcen, Atom const &atom) | core::scoring::sc::MolecularSurfaceCalculator | protected |
| AddResidue(int molecule, core::conformation::Residue const &residue) | core::scoring::sc::MolecularSurfaceCalculator | |
| AssignAtomRadius(Atom &atom) | core::scoring::sc::MolecularSurfaceCalculator | protected |
| AssignAttentionNumbers(std::vector< Atom > &atom) | core::scoring::sc::ShapeComplementarityCalculator | protectedvirtual |
| atoms | core::scoring::sc::MolecularSurfaceCalculator | |
| band | core::scoring::sc::MolecularSurfaceCalculator | |
| binwidth_dist | core::scoring::sc::MolecularSurfaceCalculator | |
| binwidth_norm | core::scoring::sc::MolecularSurfaceCalculator | |
| Calc() | core::scoring::sc::ShapeComplementarityCalculator | virtual |
| Calc(core::pose::Pose const &pose, core::Size jump_id) | core::scoring::sc::ShapeComplementarityCalculator | virtual |
| CalcNeighborDistance(int const molecule, std::vector< const DOT * > const &my_dots, std::vector< const DOT * > const &their_dots) | core::scoring::sc::ShapeComplementarityCalculator | private |
| CalcNeighborDistanceFindClosestNeighbor(DOT const &dot1, std::vector< const DOT * > const &their_dots) | core::scoring::sc::ShapeComplementarityCalculator | private |
| CalcSc(core::pose::Pose const &pose, core::Size jump_id=1, int quick=0) | core::scoring::sc::ShapeComplementarityCalculator | static |
| density | core::scoring::sc::MolecularSurfaceCalculator | |
| dots | core::scoring::sc::MolecularSurfaceCalculator | |
| GenerateMolecularSurfaces() | core::scoring::sc::MolecularSurfaceCalculator | protected |
| GetAtoms() | core::scoring::sc::MolecularSurfaceCalculator | inline |
| GetDots(int const moleculeid) | core::scoring::sc::MolecularSurfaceCalculator | inline |
| GetResults() | core::scoring::sc::MolecularSurfaceCalculator | inline |
| Init() | core::scoring::sc::MolecularSurfaceCalculator | virtual |
| MolecularSurfaceCalculator() | core::scoring::sc::MolecularSurfaceCalculator | |
| prevburied | core::scoring::sc::MolecularSurfaceCalculator | |
| prevp | core::scoring::sc::MolecularSurfaceCalculator | |
| probes | core::scoring::sc::MolecularSurfaceCalculator | |
| radii_ | core::scoring::sc::MolecularSurfaceCalculator | protectedstatic |
| radmax | core::scoring::sc::MolecularSurfaceCalculator | |
| ReadScRadii() | core::scoring::sc::MolecularSurfaceCalculator | protected |
| Reset() | core::scoring::sc::MolecularSurfaceCalculator | virtual |
| results | core::scoring::sc::MolecularSurfaceCalculator | |
| rp | core::scoring::sc::MolecularSurfaceCalculator | |
| run_ | core::scoring::sc::MolecularSurfaceCalculator | protected |
| ScValue typedef | core::scoring::sc::MolecularSurfaceCalculator | |
| sep | core::scoring::sc::MolecularSurfaceCalculator | |
| settings | core::scoring::sc::MolecularSurfaceCalculator | |
| ShapeComplementarityCalculator() | core::scoring::sc::ShapeComplementarityCalculator | |
| TrimPeripheralBand(std::vector< DOT > const &sdots, std::vector< const DOT * > &trimmed_dots) | core::scoring::sc::ShapeComplementarityCalculator | private |
| TrimPeripheralBandCheckDot(DOT const &dot, std::vector< DOT > const &sdots) | core::scoring::sc::ShapeComplementarityCalculator | private |
| Vec3 typedef | core::scoring::sc::MolecularSurfaceCalculator | |
| weight | core::scoring::sc::MolecularSurfaceCalculator | |
| WildcardMatch(char const *r, char const *pattern, int const l) | core::scoring::sc::MolecularSurfaceCalculator | protected |
| ~MolecularSurfaceCalculator() | core::scoring::sc::MolecularSurfaceCalculator | virtual |
| ~ShapeComplementarityCalculator() | core::scoring::sc::ShapeComplementarityCalculator | virtual |
1.8.4