protocols::swa::rna::SlicedPoseJobParameters Class Reference

#include <StepWiseRNA_Clusterer.hh>

Inheritance diagram for protocols::swa::rna::SlicedPoseJobParameters:

Collaboration diagram for protocols::swa::rna::SlicedPoseJobParameters:

Public Member Functions
	SlicedPoseJobParameters ()
virtual	~SlicedPoseJobParameters ()
void	setup (protocols::swa::rna::StepWiseRNA_JobParametersCOP &job_parameters)
core::pose::Pose	create_sliced_pose (core::pose::Pose const &working_pose)

Public Attributes
utility::vector1< core::Size >	sliced_pose_best_alignment
utility::vector1< core::Size >	sliced_pose_rmsd_res_list
std::map< core::Size, core::Size >	sliced_pose_full_to_sub
std::map< core::Size, bool >	sliced_pose_Is_prepend_map

Private Attributes
utility::vector1< bool >	Is_sliced_res_
utility::vector1< core::Size >	working_to_sliced_res_map_
utility::vector1< core::Size >	sliced_to_working_res_map_
utility::vector1< std::pair < core::Size, core::Size > >	delete_res_range_list_
bool	verbose_
bool	Is_setup_

Detailed Description

Definition at line 42 of file StepWiseRNA_Clusterer.hh.

Constructor & Destructor Documentation

protocols::swa::rna::SlicedPoseJobParameters::SlicedPoseJobParameters ( )

inline

Definition at line 46 of file StepWiseRNA_Clusterer.hh.

protocols::swa::rna::SlicedPoseJobParameters::~SlicedPoseJobParameters ( )

virtual

Definition at line 71 of file StepWiseRNA_Clusterer.cc.

Member Function Documentation

core::pose::Pose protocols::swa::rna::SlicedPoseJobParameters::create_sliced_pose

(

core::pose::Pose const &

working_pose)

Definition at line 1817 of file StepWiseRNA_Clusterer.cc.

References core::pose::Pose::total_residue().

void protocols::swa::rna::SlicedPoseJobParameters::setup

(

protocols::swa::rna::StepWiseRNA_JobParametersCOP &

job_parameters)

Definition at line 1698 of file StepWiseRNA_Clusterer.cc.

References protocols::swa::rna::apply_full_to_sub_mapping(), core::scoring::rna::chemical_shift::Contain_seq_num(), protocols::swa::rna::Output_is_prepend_map(), protocols::swa::rna::output_pair_size_vector(), protocols::swa::rna::Output_seq_num_list(), protocols::swa::rna::Output_title_text(), and core::io::serialization::size().

Member Data Documentation

utility::vector1< std::pair< core::Size, core::Size > > protocols::swa::rna::SlicedPoseJobParameters::delete_res_range_list_

private

Definition at line 73 of file StepWiseRNA_Clusterer.hh.

bool protocols::swa::rna::SlicedPoseJobParameters::Is_setup_

private

Definition at line 75 of file StepWiseRNA_Clusterer.hh.

utility::vector1< bool > protocols::swa::rna::SlicedPoseJobParameters::Is_sliced_res_

private

Definition at line 70 of file StepWiseRNA_Clusterer.hh.

utility::vector1< core::Size > protocols::swa::rna::SlicedPoseJobParameters::sliced_pose_best_alignment

Definition at line 61 of file StepWiseRNA_Clusterer.hh.

std::map< core::Size, core::Size > protocols::swa::rna::SlicedPoseJobParameters::sliced_pose_full_to_sub

Definition at line 63 of file StepWiseRNA_Clusterer.hh.

std::map< core::Size, bool > protocols::swa::rna::SlicedPoseJobParameters::sliced_pose_Is_prepend_map

Definition at line 64 of file StepWiseRNA_Clusterer.hh.

utility::vector1< core::Size > protocols::swa::rna::SlicedPoseJobParameters::sliced_pose_rmsd_res_list

Definition at line 62 of file StepWiseRNA_Clusterer.hh.

utility::vector1< core::Size > protocols::swa::rna::SlicedPoseJobParameters::sliced_to_working_res_map_

private

Definition at line 72 of file StepWiseRNA_Clusterer.hh.

bool protocols::swa::rna::SlicedPoseJobParameters::verbose_

private

Definition at line 74 of file StepWiseRNA_Clusterer.hh.

utility::vector1< core::Size > protocols::swa::rna::SlicedPoseJobParameters::working_to_sliced_res_map_

private

Definition at line 71 of file StepWiseRNA_Clusterer.hh.

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The documentation for this class was generated from the following files:

• src/protocols/swa/rna/StepWiseRNA_Clusterer.hh
• src/protocols/swa/rna/StepWiseRNA_Clusterer.cc