| AA typedef | core::pack::task::PackerTask | |
| add_behavior(std::string const &behavior) | core::pack::task::PackerTask_ | virtual |
| add_behavior(std::string const &behavior, Size resid) | core::pack::task::PackerTask_ | virtual |
| adducts(Size resid) const | core::pack::task::PackerTask_ | virtual |
| and_max_rotbump_energy(Real setting) | core::pack::task::PackerTask_ | virtual |
| append_rotamer_operation(rotamer_set::RotamerOperationOP rotop) | core::pack::task::PackerTask_ | virtual |
| append_rotamerset_operation(rotamer_set::RotamerSetOperationOP rotsetop) | core::pack::task::PackerTask_ | virtual |
| being_designed(Size resid) const | core::pack::task::PackerTask_ | inlinevirtual |
| being_packed(Size resid) const | core::pack::task::PackerTask_ | inlinevirtual |
| bump_check() const | core::pack::task::PackerTask_ | virtual |
| bump_check_ | core::pack::task::PackerTask_ | private |
| clean_residue_task(conformation::Residue const &original_residue, Size const seqpos) | core::pack::task::PackerTask_ | virtual |
| clone() const | core::pack::task::PackerTask_ | virtual |
| decrease_double_lazy_ig_memlimit(Size nbytes_for_rpes) | core::pack::task::PackerTask_ | virtual |
| design_any() const | core::pack::task::PackerTask_ | virtual |
| design_residue(int resid) const | core::pack::task::PackerTask_ | virtual |
| designing_residues() const | core::pack::task::PackerTask_ | virtual |
| disallow_quench(bool const &disallow_quench) | core::pack::task::PackerTask_ | virtual |
| disallow_quench() const | core::pack::task::PackerTask_ | virtual |
| disallow_quench_ | core::pack::task::PackerTask_ | private |
| dlig_mem_limit_ | core::pack::task::PackerTask_ | private |
| double_lazy_ig() const | core::pack::task::PackerTask_ | virtual |
| double_lazy_ig_ | core::pack::task::PackerTask_ | private |
| double_lazy_ig_memlimit() const | core::pack::task::PackerTask_ | virtual |
| has_behavior(std::string const &behavior, Size resid) const | core::pack::task::PackerTask_ | virtual |
| has_behavior(Size resid) const | core::pack::task::PackerTask_ | virtual |
| high_temp(Real const &high_temp) | core::pack::task::PackerTask_ | virtual |
| high_temp() const | core::pack::task::PackerTask_ | virtual |
| high_temp_ | core::pack::task::PackerTask_ | private |
| IG_edge_reweights_ | core::pack::task::PackerTask_ | private |
| IGEdgeReweights() const | core::pack::task::PackerTask_ | virtual |
| include_current(Size resid) const | core::pack::task::PackerTask_ | virtual |
| increase_multi_cool_annealer_history_size(Size setting) | core::pack::task::PackerTask_ | virtual |
| initialize_extra_rotamer_flags_from_command_line() | core::pack::task::PackerTask_ | virtual |
| initialize_from_command_line() | core::pack::task::PackerTask_ | virtual |
| lazy_ig() const | core::pack::task::PackerTask_ | virtual |
| lazy_ig_ | core::pack::task::PackerTask_ | private |
| linmem_ig() const | core::pack::task::PackerTask_ | virtual |
| linmem_ig_ | core::pack::task::PackerTask_ | private |
| low_temp(Real const &low_temp) | core::pack::task::PackerTask_ | virtual |
| low_temp() const | core::pack::task::PackerTask_ | virtual |
| low_temp_ | core::pack::task::PackerTask_ | private |
| max_rotbump_energy() const | core::pack::task::PackerTask_ | virtual |
| max_rotbump_energy_ | core::pack::task::PackerTask_ | private |
| mca_history_size_ | core::pack::task::PackerTask_ | private |
| multi_cool_annealer() const | core::pack::task::PackerTask_ | virtual |
| multi_cool_annealer_ | core::pack::task::PackerTask_ | private |
| multi_cool_annealer_history_size() const | core::pack::task::PackerTask_ | virtual |
| n_to_be_packed_ | core::pack::task::PackerTask_ | mutableprivate |
| n_to_be_packed_up_to_date_ | core::pack::task::PackerTask_ | mutableprivate |
| nonconst_residue_task(Size resid) | core::pack::task::PackerTask_ | virtual |
| nres_ | core::pack::task::PackerTask_ | private |
| num_to_be_packed() const | core::pack::task::PackerTask_ | virtual |
| operator=(PackerTask const &) | core::pack::task::PackerTask_ | privatevirtual |
| optimize_H_ | core::pack::task::PackerTask_ | private |
| or_adducts(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_adducts(bool setting, Size resid) | core::pack::task::PackerTask_ | virtual |
| or_double_lazy_ig(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_fix_his_tautomer(utility::vector1< int > const &positions, bool setting) | core::pack::task::PackerTask_ | virtual |
| or_flip_HNQ(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_include_current(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_include_current(bool setting, Size resid) | core::pack::task::PackerTask_ | virtual |
| or_lazy_ig(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_linmem_ig(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_multi_cool_annealer(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_optimize_h_mode(bool setting) | core::pack::task::PackerTask_ | virtual |
| or_preserve_c_beta(bool setting) | core::pack::task::PackerTask_ | virtual |
| pack_residue(int resid) const | core::pack::task::PackerTask_ | virtual |
| pack_residue_ | core::pack::task::PackerTask_ | private |
| PackerTask_() | core::pack::task::PackerTask_ | |
| PackerTask_(pose::Pose const &pose) | core::pack::task::PackerTask_ | |
| remap_residue_level_tasks(core::id::SequenceMappingCOP seqmap, core::pose::Pose const &pose) | core::pack::task::PackerTask_ | virtual |
| repacking_residues() const | core::pack::task::PackerTask_ | virtual |
| request_symmetrize_by_intersection() | core::pack::task::PackerTask_ | virtual |
| request_symmetrize_by_union() | core::pack::task::PackerTask_ | virtual |
| residue_task(Size resid) const | core::pack::task::PackerTask_ | virtual |
| residue_tasks_ | core::pack::task::PackerTask_ | private |
| restrict_to_repacking() | core::pack::task::PackerTask_ | virtual |
| restrict_to_residues(utility::vector1< bool > const &residues_allowed_to_be_packed) | core::pack::task::PackerTask_ | virtual |
| rotamer_couplings() const | core::pack::task::PackerTask_ | virtual |
| rotamer_couplings(RotamerCouplingsCOP setting) | core::pack::task::PackerTask_ | virtual |
| rotamer_couplings_ | core::pack::task::PackerTask_ | private |
| rotamer_couplings_exist() const | core::pack::task::PackerTask_ | virtual |
| rotamer_links() const | core::pack::task::PackerTask_ | virtual |
| rotamer_links(RotamerLinksCOP setting) | core::pack::task::PackerTask_ | virtual |
| rotamer_links_ | core::pack::task::PackerTask_ | private |
| rotamer_links_exist() const | core::pack::task::PackerTask_ | virtual |
| RotamerCouplingsCOP typedef | core::pack::task::PackerTask | |
| RotamerLinksCOP typedef | core::pack::task::PackerTask | |
| set_bump_check(bool setting) | core::pack::task::PackerTask_ | virtual |
| set_IGEdgeReweights() | core::pack::task::PackerTask_ | virtual |
| show(std::ostream &out) const | core::pack::task::PackerTask_ | virtual |
| show() const | core::pack::task::PackerTask_ | virtual |
| show_all_residue_tasks(std::ostream &out) const | core::pack::task::PackerTask_ | virtual |
| show_all_residue_tasks() const | core::pack::task::PackerTask_ | virtual |
| show_residue_task(std::ostream &out, Size resid) const | core::pack::task::PackerTask_ | virtual |
| show_residue_task(Size resid) const | core::pack::task::PackerTask_ | virtual |
| symmetrize_by_intersection() const | core::pack::task::PackerTask_ | virtual |
| symmetrize_by_union() const | core::pack::task::PackerTask_ | virtual |
| symmetry_status_ | core::pack::task::PackerTask_ | private |
| target_type(Size resid) const | core::pack::task::PackerTask_ | virtual |
| task_string(pose::Pose const &pose) const | core::pack::task::PackerTask_ | virtual |
| temporarily_fix_everything() | core::pack::task::PackerTask_ | virtual |
| temporarily_set_pack_residue(int resid, bool setting) | core::pack::task::PackerTask_ | virtual |
| total_residue() const | core::pack::task::PackerTask_ | virtual |
| update_commutative(PackerTask const &tark_in) | core::pack::task::PackerTask_ | virtual |
| update_n_to_be_packed() const | core::pack::task::PackerTask_ | private |
| update_residue_commutative(Size resid, ResidueLevelTask const &res_task_in) | core::pack::task::PackerTask_ | virtual |
| update_residue_intersection(Size resid, ResidueLevelTask const &res_task_in) | core::pack::task::PackerTask_ | virtual |
| update_residue_union(Size resid, ResidueLevelTask const &res_task_in) | core::pack::task::PackerTask_ | virtual |
| ~PackerTask()=0 | core::pack::task::PackerTask | pure virtual |
| ~PackerTask_() | core::pack::task::PackerTask_ | virtual |
1.8.4