protocols::dna::DNABase Class Reference

#include <DNAParameters.hh>

Collaboration diagram for protocols::dna::DNABase:

Public Member Functions
	DNABase ()
	DNABase (core::conformation::Residue const &rsd)
core::Real	alpha () const
core::Real	beta () const
core::Real	gamma () const
core::Real	delta () const
core::Real	epsilon () const
core::Real	zeta () const
core::Real	chi () const
core::Real	pseudorotation () const
core::Real	amplitude () const
void	alpha (core::Real in_value)
void	beta (core::Real in_value)
void	gamma (core::Real in_value)
void	delta (core::Real in_value)
void	epsilon (core::Real in_value)
void	zeta (core::Real in_value)
void	chi (core::Real in_value)
void	pseudorotation (core::Real in_value)
void	amplitude (core::Real in_value)

Private Attributes
core::Real	alpha_
core::Real	beta_
core::Real	gamma_
core::Real	delta_
core::Real	epsilon_
core::Real	zeta_
core::Real	chi_
core::Real	pseudorotation_
core::Real	amplitude_

Detailed Description

Definition at line 31 of file DNAParameters.hh.

Constructor & Destructor Documentation

protocols::dna::DNABase::DNABase ( )

inline

Definition at line 33 of file DNAParameters.hh.

protocols::dna::DNABase::DNABase

(

core::conformation::Residue const &

rsd)

Definition at line 51 of file DNAParameters.cc.

References core::conformation::Residue::chi(), core::conformation::Residue::is_DNA(), and core::conformation::Residue::mainchain_torsion().

Member Function Documentation

core::Real protocols::dna::DNABase::alpha ( ) const

inline

Definition at line 40 of file DNAParameters.hh.

References alpha_.

void protocols::dna::DNABase::alpha ( core::Real  in_value)

inline

Definition at line 50 of file DNAParameters.hh.

References alpha_.

core::Real protocols::dna::DNABase::amplitude ( ) const

inline

Definition at line 48 of file DNAParameters.hh.

References amplitude_.

void protocols::dna::DNABase::amplitude ( core::Real  in_value)

inline

Definition at line 58 of file DNAParameters.hh.

References amplitude_.

core::Real protocols::dna::DNABase::beta ( ) const

inline

Definition at line 41 of file DNAParameters.hh.

References beta_.

void protocols::dna::DNABase::beta ( core::Real  in_value)

inline

Definition at line 51 of file DNAParameters.hh.

References beta_.

core::Real protocols::dna::DNABase::chi ( ) const

inline

Definition at line 46 of file DNAParameters.hh.

References chi_.

void protocols::dna::DNABase::chi ( core::Real  in_value)

inline

Definition at line 56 of file DNAParameters.hh.

References chi_.

core::Real protocols::dna::DNABase::delta ( ) const

inline

Definition at line 43 of file DNAParameters.hh.

References delta_.

void protocols::dna::DNABase::delta ( core::Real  in_value)

inline

Definition at line 53 of file DNAParameters.hh.

References delta_.

core::Real protocols::dna::DNABase::epsilon ( ) const

inline

Definition at line 44 of file DNAParameters.hh.

References epsilon_.

void protocols::dna::DNABase::epsilon ( core::Real  in_value)

inline

Definition at line 54 of file DNAParameters.hh.

References epsilon_.

core::Real protocols::dna::DNABase::gamma ( ) const

inline

Definition at line 42 of file DNAParameters.hh.

References gamma_.

void protocols::dna::DNABase::gamma ( core::Real  in_value)

inline

Definition at line 52 of file DNAParameters.hh.

References gamma_.

core::Real protocols::dna::DNABase::pseudorotation ( ) const

inline

Definition at line 47 of file DNAParameters.hh.

References pseudorotation_.

void protocols::dna::DNABase::pseudorotation ( core::Real  in_value)

inline

Definition at line 57 of file DNAParameters.hh.

References pseudorotation_.

core::Real protocols::dna::DNABase::zeta ( ) const

inline

Definition at line 45 of file DNAParameters.hh.

References zeta_.

void protocols::dna::DNABase::zeta ( core::Real  in_value)

inline

Definition at line 55 of file DNAParameters.hh.

References zeta_.

Member Data Documentation

core::Real protocols::dna::DNABase::alpha_

private

Definition at line 61 of file DNAParameters.hh.

Referenced by alpha().

core::Real protocols::dna::DNABase::amplitude_

private

Definition at line 69 of file DNAParameters.hh.

Referenced by amplitude().

core::Real protocols::dna::DNABase::beta_

private

Definition at line 62 of file DNAParameters.hh.

Referenced by beta().

core::Real protocols::dna::DNABase::chi_

private

Definition at line 67 of file DNAParameters.hh.

Referenced by chi().

core::Real protocols::dna::DNABase::delta_

private

Definition at line 64 of file DNAParameters.hh.

Referenced by delta().

core::Real protocols::dna::DNABase::epsilon_

private

Definition at line 65 of file DNAParameters.hh.

Referenced by epsilon().

core::Real protocols::dna::DNABase::gamma_

private

Definition at line 63 of file DNAParameters.hh.

Referenced by gamma().

core::Real protocols::dna::DNABase::pseudorotation_

private

Definition at line 68 of file DNAParameters.hh.

Referenced by pseudorotation().

core::Real protocols::dna::DNABase::zeta_

private

Definition at line 66 of file DNAParameters.hh.

Referenced by zeta().

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The documentation for this class was generated from the following files:

• src/protocols/dna/DNAParameters.hh
• src/protocols/dna/DNAParameters.cc