#include <WriteUpstreamCoordinateKineamge.hh>

Inheritance diagram for protocols::match::output::WriteUpstreamHitKinemage:

Collaboration diagram for protocols::match::output::WriteUpstreamHitKinemage:

Public Member Functions
	WriteUpstreamHitKinemage ()

	WriteUpstreamHitKinemage (std::string const &fname)

	WriteUpstreamHitKinemage (std::ostream &ostr)

virtual	~WriteUpstreamHitKinemage ()

virtual void	process_hit (Hit const &hit, core::conformation::Residue const &upstream_conformation)

void	output_hit (Hit const &hit, core::conformation::Residue const &upstream_conformation)
	Non-virtual method to write out a kinemage for an upstream residue. More...

void	output_upstream_coordinates (upstream_hit const &hit, core::conformation::Residue const &upstream_conformation)
	non-virtual method to write out a kinemage for an upstream residue; without invoking dswriter_->write_downstream_coordinates(). Only information about the upstream portion of the hit is needed. More...

void	start_new_match ()

void	set_kinemage_file (std::string const &fname)

void	set_dswriter (DownstreamCoordinateKinemageWriterOP dswriter)

void	geom_id (Size setting)

void	set_master (std::string const &master)
	Set the kinemage master for the upstream residue, overriding the default master, which is "geom#". More...

void	default_master (bool setting)
	Set whether the default master should be used, or whether the user-defined master should be used. If the user defined master is the empty string, no master will be writen. More...

bool	default_master () const
	Returns whether or not the default master is being used. More...

void	animate (bool setting)

void	dominant (bool setting)

void	group (bool setting)

void	write_virtual_atoms (bool setting)

Public Member Functions inherited from protocols::match::upstream::UpstreamResidueProcessor
virtual	~UpstreamResidueProcessor ()

Private Attributes
Size	matches_output_count_

bool	use_default_master_

std::string	master_

bool	animate_

bool	dominant_

bool	group_

bool	write_virtual_atoms_

Size	geom_id_

std::string	kinemage_file_name_

std::ofstream	file_out_

std::ostream &	ostr_

DownstreamCoordinateKinemageWriterOP	dswriter_

Detailed Description

Definition at line 168 of file WriteUpstreamCoordinateKineamge.hh.

Constructor & Destructor Documentation

protocols::match::output::WriteUpstreamHitKinemage::WriteUpstreamHitKinemage ( )

Definition at line 373 of file WriteUpstreamCoordinateKineamge.cc.

protocols::match::output::WriteUpstreamHitKinemage::WriteUpstreamHitKinemage ( std::string const & fname)

Definition at line 387 of file WriteUpstreamCoordinateKineamge.cc.

References file_out_, and kinemage_file_name_.

protocols::match::output::WriteUpstreamHitKinemage::WriteUpstreamHitKinemage ( std::ostream & ostr)

Definition at line 405 of file WriteUpstreamCoordinateKineamge.cc.

protocols::match::output::WriteUpstreamHitKinemage::~WriteUpstreamHitKinemage ( )

virtual

Definition at line 418 of file WriteUpstreamCoordinateKineamge.cc.

References file_out_.

Member Function Documentation

void protocols::match::output::WriteUpstreamHitKinemage::animate ( bool setting)

Definition at line 522 of file WriteUpstreamCoordinateKineamge.cc.

References animate_.

void protocols::match::output::WriteUpstreamHitKinemage::default_master ( bool setting)

Set whether the default master should be used, or whether the user-defined master should be used. If the user defined master is the empty string, no master will be writen.

Definition at line 510 of file WriteUpstreamCoordinateKineamge.cc.

References use_default_master_.

bool protocols::match::output::WriteUpstreamHitKinemage::default_master ( ) const

Returns whether or not the default master is being used.

Definition at line 517 of file WriteUpstreamCoordinateKineamge.cc.

References use_default_master_.

void protocols::match::output::WriteUpstreamHitKinemage::dominant ( bool setting)

Definition at line 527 of file WriteUpstreamCoordinateKineamge.cc.

References dominant_.

void protocols::match::output::WriteUpstreamHitKinemage::geom_id ( Size setting)

Definition at line 493 of file WriteUpstreamCoordinateKineamge.cc.

References dswriter_, and geom_id_.

void protocols::match::output::WriteUpstreamHitKinemage::group ( bool setting)

Definition at line 532 of file WriteUpstreamCoordinateKineamge.cc.

References group_.

void protocols::match::output::WriteUpstreamHitKinemage::output_hit	(	Hit const &	hit,
		core::conformation::Residue const &	upstream_conformation
	)

Non-virtual method to write out a kinemage for an upstream residue.

Definition at line 433 of file WriteUpstreamCoordinateKineamge.cc.

References dswriter_, ostr_, and output_upstream_coordinates().

Referenced by process_hit().

void protocols::match::output::WriteUpstreamHitKinemage::output_upstream_coordinates	(	upstream_hit const &	hit,
		core::conformation::Residue const &	upstream_conformation
	)

non-virtual method to write out a kinemage for an upstream residue; without invoking dswriter_->write_downstream_coordinates(). Only information about the upstream portion of the hit is needed.

Definition at line 445 of file WriteUpstreamCoordinateKineamge.cc.

References protocols::match::output::ResidueKinemageWriter::animate(), animate_, protocols::match::output::ResidueKinemageWriter::dominant(), dominant_, geom_id_, protocols::match::output::ResidueKinemageWriter::group(), group_, protocols::match::output::ResidueKinemageWriter::master(), master_, ostr_, protocols::match::upstream_hit::scaffold_build_id(), protocols::match::upstream_hit::upstream_conf_id(), use_default_master_, and protocols::match::output::ResidueKinemageWriter::write_rsd_coords().