protocols::protein_interface_design::filters Namespace Reference

Classes
class	AtomicContactCountFilter
class	AtomicContactCountFilterCreator
class	AverageDegreeFilter
class	AverageDegreeFilterCreator
class	BindingStrainFilter
class	BindingStrainFilterCreator
class	BoltzmannFilter
class	BoltzmannFilterCreator
class	DesignableResiduesFilter
class	DesignableResiduesFilterCreator
class	DisulfideFilter
	Filters for structures which could form a disulfide bond across the docking interface. More...
class	DisulfideFilterCreator
class	FilterScanFilter
class	FilterScanFilterCreator
class	HbondsToResidueFilter
	returns true if the number of hbonding partners to a particular residue exceeds a certain value This filter is useful in conjunction with DesignMinimizeHbonds class More...
class	HbondsToResidueFilterCreator
class	InterfaceHolesFilter
class	InterfaceHolesFilterCreator
class	RelativeSegmentFilter
	returns the residues aligned to a segment on the input pdb to the source pdb More...
class	RelativeSegmentFilterCreator
class	RmsdFilter
class	RmsdFilterCreator
class	SequenceRecoveryFilter
class	SequenceRecoveryFilterCreator
class	SpecificResiduesNearInterfaceFilter
class	SpecificResiduesNearInterfaceFilterCreator
class	StubScoreFilter
class	StubScoreFilterCreator
class	StubScoreLoopsFilter
class	StubScoreLoopsFilterCreator
class	Torsion
class	TorsionCreator

Typedefs
typedef utility::pointer::owning_ptr < AtomicContactCountFilter >	AverageDegreeCountFilterOP
typedef utility::pointer::owning_ptr < AtomicContactCountFilter const >	AverageDegreeCountFilterCOP
typedef utility::pointer::owning_ptr < AverageDegreeFilter >	AverageDegreeFilterOP
typedef utility::pointer::owning_ptr < AverageDegreeFilter const >	AverageDegreeFilterCOP
typedef utility::pointer::owning_ptr < BindingStrainFilter >	BindingStrainFilterOP
typedef utility::pointer::owning_ptr < BindingStrainFilter const >	BindingStrainFilterCOP
typedef utility::pointer::owning_ptr < BoltzmannFilter >	BoltzmannFilterOP
typedef utility::pointer::owning_ptr < BoltzmannFilter const >	BoltzmannFilterCOP
typedef utility::pointer::owning_ptr < DesignableResiduesFilter >	DesignableResiduesFilterOP
typedef utility::pointer::owning_ptr < DesignableResiduesFilter const >	DesignableResiduesFilterCOP
typedef utility::pointer::owning_ptr < FilterScanFilter >	FilterScanFilterOP
typedef utility::pointer::owning_ptr < FilterScanFilter const >	FilterScanFilterCOP
typedef utility::pointer::owning_ptr < RelativeSegment >	RelativeSegmentOP
typedef utility::pointer::owning_ptr < RelativeSegment const >	RelativeSegmentCOP
typedef utility::pointer::owning_ptr < SequenceRecoveryFilter >	SequenceRecoveryFilterOP
typedef utility::pointer::owning_ptr < SequenceRecoveryFilter const >	SequenceRecoveryFilterCOP
typedef utility::pointer::owning_ptr < SpecificResiduesNearInterfaceFilter >	SpecificResiduesNearInterfaceFilterOP
typedef utility::pointer::owning_ptr < SpecificResiduesNearInterfaceFilter const >	SpecificResiduesNearInterfaceFilterCOP
typedef utility::pointer::owning_ptr < StubScoreFilter >	StubScoreFilterOP
typedef utility::pointer::owning_ptr < StubScoreFilter const >	StubScoreFilterCOP
typedef utility::pointer::owning_ptr < StubScoreLoopsFilter >	StubScoreLoopsFilterOP
typedef utility::pointer::owning_ptr < StubScoreLoopsFilter const >	StubScoreLoopsFilterCOP
typedef utility::pointer::owning_ptr < Torsion >	TorsionOP
typedef utility::pointer::owning_ptr < Torsion const >	TorsionCOP

Functions
static basic::Tracer	TR ("protocols.protein_interface_design.filters.AtomicContactCountFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.AverageDegreeFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.BindingStrainFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.BoltzmannFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.DesignableResiduesFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.DisulfideFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.FilterScanFilter")
static basic::Tracer	TR_residue_scan ("ResidueScan")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.HbondsToResidueFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.InterfaceHolesFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.RelativeSegmentFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.RmsdFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.SequenceRecoveryFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.StubScoreFilter")
static basic::Tracer	tr ("protocols.protein_interface_design.filters.StubScoreLoopsFilter")
static basic::Tracer	TR ("protocols.protein_interface_design.filters.Torsion")
static basic::Tracer	TR_database ("protocols.protein_interface_design.filters.Torsion_database")

Typedef Documentation

typedef utility::pointer::owning_ptr< AtomicContactCountFilter const > protocols::protein_interface_design::filters::AverageDegreeCountFilterCOP

Definition at line 30 of file AtomicContactCountFilter.fwd.hh.

typedef utility::pointer::owning_ptr< AtomicContactCountFilter > protocols::protein_interface_design::filters::AverageDegreeCountFilterOP

Definition at line 26 of file AtomicContactCountFilter.fwd.hh.

typedef utility::pointer::owning_ptr< AverageDegreeFilter const > protocols::protein_interface_design::filters::AverageDegreeFilterCOP

Definition at line 31 of file AverageDegreeFilter.fwd.hh.

typedef utility::pointer::owning_ptr< AverageDegreeFilter > protocols::protein_interface_design::filters::AverageDegreeFilterOP

Definition at line 27 of file AverageDegreeFilter.fwd.hh.

typedef utility::pointer::owning_ptr< BindingStrainFilter const > protocols::protein_interface_design::filters::BindingStrainFilterCOP

Definition at line 31 of file BindingStrainFilter.fwd.hh.

typedef utility::pointer::owning_ptr< BindingStrainFilter > protocols::protein_interface_design::filters::BindingStrainFilterOP

Definition at line 27 of file BindingStrainFilter.fwd.hh.

typedef utility::pointer::owning_ptr< BoltzmannFilter const > protocols::protein_interface_design::filters::BoltzmannFilterCOP

Definition at line 31 of file BoltzmannFilter.fwd.hh.

typedef utility::pointer::owning_ptr< BoltzmannFilter > protocols::protein_interface_design::filters::BoltzmannFilterOP

Definition at line 27 of file BoltzmannFilter.fwd.hh.

typedef utility::pointer::owning_ptr< DesignableResiduesFilter const > protocols::protein_interface_design::filters::DesignableResiduesFilterCOP

Definition at line 31 of file DesignableResiduesFilter.fwd.hh.

typedef utility::pointer::owning_ptr< DesignableResiduesFilter > protocols::protein_interface_design::filters::DesignableResiduesFilterOP

Definition at line 27 of file DesignableResiduesFilter.fwd.hh.

typedef utility::pointer::owning_ptr< FilterScanFilter const > protocols::protein_interface_design::filters::FilterScanFilterCOP

Definition at line 31 of file FilterScan.fwd.hh.

typedef utility::pointer::owning_ptr< FilterScanFilter > protocols::protein_interface_design::filters::FilterScanFilterOP

Definition at line 27 of file FilterScan.fwd.hh.

typedef utility::pointer::owning_ptr< RelativeSegment const > protocols::protein_interface_design::filters::RelativeSegmentCOP

Definition at line 31 of file RelativeSegmentFilter.fwd.hh.

typedef utility::pointer::owning_ptr< RelativeSegment > protocols::protein_interface_design::filters::RelativeSegmentOP

Definition at line 27 of file RelativeSegmentFilter.fwd.hh.

typedef utility::pointer::owning_ptr< SequenceRecoveryFilter const > protocols::protein_interface_design::filters::SequenceRecoveryFilterCOP

Definition at line 31 of file SequenceRecoveryFilter.fwd.hh.

typedef utility::pointer::owning_ptr< SequenceRecoveryFilter > protocols::protein_interface_design::filters::SequenceRecoveryFilterOP

Definition at line 27 of file SequenceRecoveryFilter.fwd.hh.

typedef utility::pointer::owning_ptr< SpecificResiduesNearInterfaceFilter const > protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterCOP

Definition at line 31 of file SpecificResiduesNearInterfaceFilter.fwd.hh.

typedef utility::pointer::owning_ptr< SpecificResiduesNearInterfaceFilter > protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterOP

Definition at line 27 of file SpecificResiduesNearInterfaceFilter.fwd.hh.

typedef utility::pointer::owning_ptr< StubScoreFilter const > protocols::protein_interface_design::filters::StubScoreFilterCOP

Definition at line 31 of file StubScoreFilter.fwd.hh.

typedef utility::pointer::owning_ptr< StubScoreFilter > protocols::protein_interface_design::filters::StubScoreFilterOP

Definition at line 27 of file StubScoreFilter.fwd.hh.

typedef utility::pointer::owning_ptr< StubScoreLoopsFilter const > protocols::protein_interface_design::filters::StubScoreLoopsFilterCOP

Definition at line 31 of file StubScoreLoopsFilter.fwd.hh.

typedef utility::pointer::owning_ptr< StubScoreLoopsFilter > protocols::protein_interface_design::filters::StubScoreLoopsFilterOP

Definition at line 27 of file StubScoreLoopsFilter.fwd.hh.

typedef utility::pointer::owning_ptr< Torsion const > protocols::protein_interface_design::filters::TorsionCOP

Definition at line 31 of file TorsionFilter.fwd.hh.

typedef utility::pointer::owning_ptr< Torsion > protocols::protein_interface_design::filters::TorsionOP

Definition at line 27 of file TorsionFilter.fwd.hh.

Function Documentation

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.RelativeSegmentFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.AverageDegreeFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.Torsion"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.BoltzmannFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.InterfaceHolesFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.DesignableResiduesFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::tr ( "protocols.protein_interface_design.filters.StubScoreLoopsFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.BindingStrainFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.SequenceRecoveryFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.StubScoreFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.AtomicContactCountFilter"  )

static

Referenced by protocols::protein_interface_design::filters::InterfaceHolesFilter::apply(), protocols::protein_interface_design::filters::RelativeSegmentFilter::apply(), protocols::protein_interface_design::filters::RmsdFilter::apply(), protocols::protein_interface_design::filters::SequenceRecoveryFilter::apply(), protocols::protein_interface_design::filters::DesignableResiduesFilter::apply(), protocols::protein_interface_design::filters::DisulfideFilter::apply(), protocols::protein_interface_design::filters::AverageDegreeFilter::compute(), protocols::protein_interface_design::filters::SequenceRecoveryFilter::compute(), protocols::protein_interface_design::filters::DesignableResiduesFilter::compute(), protocols::protein_interface_design::filters::InterfaceHolesFilter::compute(), protocols::protein_interface_design::filters::DesignableResiduesFilter::parse_def(), protocols::protein_interface_design::filters::SequenceRecoveryFilter::parse_def(), protocols::protein_interface_design::filters::RmsdFilter::parse_my_tag(), protocols::protein_interface_design::filters::BindingStrainFilter::parse_my_tag(), protocols::protein_interface_design::filters::AverageDegreeFilter::parse_my_tag(), protocols::protein_interface_design::filters::RelativeSegmentFilter::parse_my_tag(), protocols::protein_interface_design::filters::DesignableResiduesFilter::parse_my_tag(), protocols::protein_interface_design::filters::InterfaceHolesFilter::parse_my_tag(), protocols::protein_interface_design::filters::SequenceRecoveryFilter::parse_my_tag(), and protocols::protein_interface_design::filters::DisulfideFilter::parse_my_tag().

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.SpecificResiduesNearInterfaceFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.DisulfideFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.FilterScanFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.RmsdFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR ( "protocols.protein_interface_design.filters.HbondsToResidueFilter"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR_database ( "protocols.protein_interface_design.filters.Torsion_database"  )

static

static basic::Tracer protocols::protein_interface_design::filters::TR_residue_scan ( "ResidueScan"  )

static