#include <ConstraintGraph.hh>

Inheritance diagram for core::scoring::constraints::ConstraintEdge:

Collaboration diagram for core::scoring::constraints::ConstraintEdge:

Public Types
typedef graph::Edge	parent

typedef graph::Edge	Edge

Public Types inherited from core::graph::Edge
typedef EdgeListIterator	EdgeListIter

Public Member Functions
	ConstraintEdge (graph::Graph *owner, Size first_node_ind, Size second_node_ind)

	ConstraintEdge (graph::Graph *owner, ConstraintEdge const &example_edge)

virtual	~ConstraintEdge ()

virtual void	copy_from (Edge const *source)
	copy-from for use in Graph::operator= and copy ctors More...

virtual Size	count_static_memory () const
	how much memory is statically allocated by this edge More...

virtual Size	count_dynamic_memory () const
	how much memory is dynamically allocated by this edge – must be recursively invoked by a derived class. More...

void	rna_bond_geometry_energy (Energy)

void	atom_pair_constraint_energy (Energy)

void	coordinate_constraint_energy (Energy)

void	angle_constraint_energy (Energy)

void	dihedral_constraint_energy (Energy)

void	backbone_stub_constraint_energy (Energy)

void	res_type_linking_constraint_energy (Energy)

Energy	rna_bond_geometry_energy () const

Energy	atom_pair_constraint_energy () const

Energy	coordinate_constraint_energy () const

Energy	angle_constraint_energy () const

Energy	dihedral_constraint_energy () const

Energy	backbone_stub_constraint_energy () const

Energy	res_type_linking_constraint_energy () const

void	energy_computed (bool setting)

bool	energy_computed () const

Public Member Functions inherited from core::graph::Edge
virtual	~Edge ()
	destructor More...

	Edge (Graph *owner, platform::Size first_node_ind, platform::Size second_node_ind)
	Main edge constructor. This should only be invoked by create_new_edge, which itself is only called by add_edge. The ONLY way an edge should be added to a graph is through add_edge. NOTE: edges should be only be deleted by a call to the Graph's delete_edge method, and this method absolutely must be implemented by derived Graph classes. More...

platform::Size	get_other_ind (platform::Size node_index) const
	returns the index of the one node given the index of the other. node_index must be one of the two nodes that this edge is incident upon. More...

Node const *	get_other_node (platform::Size node_index) const
	returns a const pointer to one node given the index of the other. node_index must be one of the two nodes that this edge is incident upon. More...

Node *	get_other_node (platform::Size node_index)
	returns a non-const pointer to one node given the index of the other. node_index must be one of the two nodes that this edge is incident upon. More...

platform::Size	get_first_node_ind () const
	returns the index of the lower node More...

platform::Size	get_second_node_ind () const
	returns the index of the upper node More...

void	set_pos_in_owners_list (EdgeListIter edge_iterator)
	called only by class Graph, this function gives the Edge the data it needs to later delete itself from its owner's edge list in constant time. More...

bool	same_edge (platform::Size node1, platform::Size node2) const
	Is this the same edge as another edge (node1,node2)? Note: this graph does not work for multi-graphs. Edges must be unique. More...

bool	is_loop () const
	Is this edge a loop? In Pseudographs, loop edges are incident twice on a single vertex. More...

Private Attributes
Energy	rna_bond_geometry_energy_

Energy	atom_pair_constraint_energy_

Energy	coordinate_constraint_energy_

Energy	angle_constraint_energy_

Energy	dihedral_constraint_energy_

Energy	backbone_stub_constraint_energy_

Energy	res_type_linking_constraint_energy_

bool	energy_computed_

Additional Inherited Members
Protected Member Functions inherited from core::graph::Edge
platform::Size	get_node_index (platform::Size index) const
	get the node index for one of the two nodes this edge is incident upon uses c-style index-from-0. More...

Node const *	get_node (platform::Size index) const
	get a const * to one node that this edge is incident upon uses c-style index-from-0 for these two nodes More...

Node *	get_node (platform::Size index)
	get a non-const * to one node that this edge is incident upon uses c-style index-from-0 for these two nodes More...

Graph const *	get_owner () const
	get a const * to the owning graph More...

Graph *	get_owner ()
	get a non-const * to the owning graph More...

Detailed Description

Definition at line 46 of file ConstraintGraph.hh.

Member Typedef Documentation

typedef graph::Edge core::scoring::constraints::ConstraintEdge::Edge

Definition at line 51 of file ConstraintGraph.hh.

typedef graph::Edge core::scoring::constraints::ConstraintEdge::parent

Definition at line 50 of file ConstraintGraph.hh.

Constructor & Destructor Documentation

core::scoring::constraints::ConstraintEdge::ConstraintEdge	(	graph::Graph *	owner,
		Size	first_node_ind,
		Size	second_node_ind
	)

Definition at line 52 of file ConstraintGraph.cc.

Referenced by count_static_memory().

core::scoring::constraints::ConstraintEdge::ConstraintEdge	(	graph::Graph *	owner,
		ConstraintEdge const &	example_edge
	)

Definition at line 66 of file ConstraintGraph.cc.

core::scoring::constraints::ConstraintEdge::~ConstraintEdge ( )

virtual

Definition at line 49 of file ConstraintGraph.cc.

Member Function Documentation

void core::scoring::constraints::ConstraintEdge::angle_constraint_energy ( Energy setting)

Definition at line 125 of file ConstraintGraph.cc.

References angle_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::angle_constraint_energy ( ) const

Definition at line 167 of file ConstraintGraph.cc.

References angle_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::atom_pair_constraint_energy ( Energy setting)

Definition at line 113 of file ConstraintGraph.cc.

References atom_pair_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::atom_pair_constraint_energy ( ) const

Definition at line 155 of file ConstraintGraph.cc.

References atom_pair_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::backbone_stub_constraint_energy ( Energy setting)

Definition at line 137 of file ConstraintGraph.cc.

References backbone_stub_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::backbone_stub_constraint_energy ( ) const

Definition at line 179 of file ConstraintGraph.cc.

References backbone_stub_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::coordinate_constraint_energy ( Energy setting)

Definition at line 119 of file ConstraintGraph.cc.

References coordinate_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::coordinate_constraint_energy ( ) const

Definition at line 161 of file ConstraintGraph.cc.

References coordinate_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::copy_from ( graph::Edge const * source)

virtual

copy-from for use in Graph::operator= and copy ctors

derived classes should recursively call the copy_from method to ensure all parent class data is copied. It just so happens that this method does nothing, but that could change and the derived class should include a call to this function for that reason.

Reimplemented from core::graph::Edge.

Definition at line 80 of file ConstraintGraph.cc.

References angle_constraint_energy_, atom_pair_constraint_energy_, backbone_stub_constraint_energy_, coordinate_constraint_energy_, dihedral_constraint_energy_, energy_computed_, res_type_linking_constraint_energy_, and rna_bond_geometry_energy_.