JobDataFeatures.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file   src/protocols/features/JobDataFeatures.hh
/// @author Sam DeLuca

#ifndef INCLUDED_protocols_features_JobDataFeatures_hh
#define INCLUDED_protocols_features_JobDataFeatures_hh

//unit headers
#include <protocols/features/FeaturesReporter.hh>
#include <protocols/features/JobDataFeatures.fwd.hh>

//External
#include <boost/uuid/uuid.hpp>

//platform headers
#include <protocols/jd2/Job.fwd.hh>

#include <utility/vector1.hh>



namespace protocols {
namespace features {

class JobDataFeatures :public protocols::features::FeaturesReporter {
public:
  JobDataFeatures();
  JobDataFeatures(JobDataFeatures const & src);
  virtual ~JobDataFeatures();

  ///@brief return string with class name
  std::string type_name() const;

  ///@brief generate the table schemas and write them to the database
  virtual void
  write_schema_to_db(utility::sql_database::sessionOP db_session) const;

  ///@brief return the set of features reporters that are required to
  ///also already be extracted by the time this one is used.
  utility::vector1<std::string>
  features_reporter_dependencies() const;

  ///@brief collect all the feature data for the pose
  core::Size
  report_features(
    core::pose::Pose const & pose,
    utility::vector1<bool> const & relevant_residues,
    boost::uuids::uuid struct_id,
    utility::sql_database::sessionOP db_session
  );

  void
  load_into_pose(
    utility::sql_database::sessionOP db_session,
    boost::uuids::uuid struct_id,
    core::pose::Pose & pose
  );

  void delete_record(
    boost::uuids::uuid struct_id,
    utility::sql_database::sessionOP db_session
  );
private:
  void insert_string_rows(boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const;

  void insert_string_string_rows(boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const;

  void insert_string_real_rows(boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const;

  void load_string_data(utility::sql_database::sessionOP  db_session, boost::uuids::uuid struct_id, core::pose::Pose & pose);

  void load_string_string_data(utility::sql_database::sessionOP  db_session, boost::uuids::uuid struct_id, core::pose::Pose & pose);

  void load_string_real_data(utility::sql_database::sessionOP  db_session, boost::uuids::uuid struct_id, core::pose::Pose & pose);
};

}
}



#endif /* JOBDATAFEATURES_HH_ */