Rosetta 3.5
Main Page
Related Pages
Namespaces
Classes
Files
Examples
File List
File Members
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Pages
src
protocols
surface_docking
SlideIntoSurface.hh
Go to the documentation of this file.
1
// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;
2
// rm-trailing-spaces:t -*-
3
// vi: set ts=2 noet:
4
//
5
// (c) Copyright Rosetta Commons Member Institutions.
6
// (c) This file is part of the Rosetta software suite and is made available
7
// under license.
8
// (c) The Rosetta software is developed by the contributing members of the
9
// Rosetta Commons.
10
// (c) For more information, see http://www.rosettacommons.org. Questions about
11
// this can be
12
// (c) addressed to University of Washington UW TechTransfer,
13
// email: license@u.washington.edu.
14
15
/// @file SurfaceOrientMover.hh
16
/// @brief <add a description of the class>
17
/// @author Robin A Thottungal (rathottungal@gmail.com)
18
19
#ifndef INCLUDED_protocols_surface_docking_SlideIntoSurface_hh
20
#define INCLUDED_protocols_surface_docking_SlideIntoSurface_hh
21
22
// Unit Headers
23
24
// Package headers
25
#include <
protocols/surface_docking/SurfaceParameters.fwd.hh
>
26
#include <
protocols/moves/Mover.hh
>
27
#include <
core/scoring/ScoreFunction.fwd.hh
>
28
29
// Project headers
30
#include <
core/types.hh
>
31
#include <
core/pose/Pose.fwd.hh
>
32
33
// ObjexxFCL Headers
34
35
// Utility Headers
36
37
// C++ Headers
38
#include <string>
39
#include <map>
40
#include <list>
41
42
//Auto Headers
43
#include <sstream>
44
45
namespace
protocols {
46
namespace
surface_docking {
47
48
class
SlideIntoSurface
:
public
moves::Mover
{
49
50
public
:
51
52
SlideIntoSurface
();
53
54
SlideIntoSurface
(
core::Size
const
rb_jump);
55
56
//destructor
57
~SlideIntoSurface
();
58
59
/// virtual functions that get overloaded or
60
// called from the inheriting classes
61
void
apply
(
core::pose::Pose
& );
62
63
virtual
std::string
get_name
()
const
;
64
65
private
:
66
core::scoring::ScoreFunctionOP
scorefxn_
;
67
// which jump to use for docking
68
core::Size
rb_jump_
;
69
};
70
71
/// @brief Slides docking partners together by monitoring fa_rep.
72
/// @details
73
/// If partners are already touching, no change is made.
74
/// Separation will be 1A or less after calling this function.
75
class
FaSlideIntoSurface
:
public
moves::Mover
76
{
77
public
:
78
FaSlideIntoSurface
();
79
FaSlideIntoSurface
(
core::Size
const
rb_jump);
80
//protocols::surface_docking::SurfaceParametersOP surfParams);
81
82
//destructor
83
~FaSlideIntoSurface
();
84
85
virtual
void
apply
(
core::pose::Pose
& pose );
86
virtual
std::string
get_name
()
const
;
87
88
private
:
89
core::Size
rb_jump_
;
90
core::scoring::ScoreFunctionOP
scorefxn_
;
91
core::Real
tolerance_
;
///< how accurate do you want to be?
92
protocols::surface_docking::SurfaceParametersOP
surfaceParams_
;
93
};
94
95
96
/// @brief Moves the protein away from the surface.
97
/// @details
98
class
FaSlideAwayFromSurface
:
public
moves::Mover
99
{
100
public
:
101
FaSlideAwayFromSurface
();
102
FaSlideAwayFromSurface
(
core::Size
const
rb_jump);
103
104
//destructor
105
~FaSlideAwayFromSurface
();
106
107
virtual
void
apply
(
core::pose::Pose
& pose );
108
virtual
std::string
get_name
()
const
;
109
110
private
:
111
core::scoring::ScoreFunctionOP
scorefxn_
;
112
core::Size
rb_jump_
;
113
core::Real
tolerance_
;
114
115
};
116
117
118
}
// surfaceDockingProtocols
119
}
// protocols
120
121
#endif
Generated on Sat Jun 1 2013 12:18:47 for Rosetta 3.5 by
1.8.4