protocols::match::upstream::ScaffoldBuildPoint Class Reference

#include <ScaffoldBuildPoint.hh>

Inheritance diagram for protocols::match::upstream::ScaffoldBuildPoint:

Collaboration diagram for protocols::match::upstream::ScaffoldBuildPoint:

Public Types
typedef core::Size	Size

Public Member Functions
	ScaffoldBuildPoint ()
	ScaffoldBuildPoint (Size index)
virtual	~ScaffoldBuildPoint ()
virtual bool	compatible (ScaffoldBuildPoint const &, bool first_dispatch=true) const
virtual bool	compatible (OriginalBackboneBuildPoint const &, bool first_dispatch=true) const
virtual Size	original_insertion_point () const =0
	Inform the calling function where in the original scaffold this build point should be inserted. If the output pose from a matching has a different number of residues than the original scaffold, then the calling function must determine where the hit from this build point should be inserted. More...
virtual void	insert (Size seqpos_to_insert_at, Hit const &hit, UpstreamBuilderCOP builder, core::pose::Pose &pose) const =0
Size	index () const
void	index (Size setting)

Private Attributes
Size	index_

Detailed Description

Definition at line 46 of file ScaffoldBuildPoint.hh.

Member Typedef Documentation

typedef core::Size protocols::match::upstream::ScaffoldBuildPoint::Size

Definition at line 49 of file ScaffoldBuildPoint.hh.

Constructor & Destructor Documentation

protocols::match::upstream::ScaffoldBuildPoint::ScaffoldBuildPoint

(

)

Definition at line 35 of file ScaffoldBuildPoint.cc.

protocols::match::upstream::ScaffoldBuildPoint::ScaffoldBuildPoint

(

Size

index)

Definition at line 36 of file ScaffoldBuildPoint.cc.

protocols::match::upstream::ScaffoldBuildPoint::~ScaffoldBuildPoint ( )

virtual

Definition at line 37 of file ScaffoldBuildPoint.cc.

Member Function Documentation

bool protocols::match::upstream::ScaffoldBuildPoint::compatible ( ScaffoldBuildPoint const &  other, bool  first_dispatch = true  ) const

virtual

Reimplemented in protocols::match::upstream::OriginalBackboneBuildPoint.

Definition at line 39 of file ScaffoldBuildPoint.cc.

References compatible().

Referenced by compatible(), and protocols::match::upstream::OriginalBackboneBuildPoint::compatible().

bool protocols::match::upstream::ScaffoldBuildPoint::compatible ( OriginalBackboneBuildPoint const &  other, bool  first_dispatch = true  ) const

virtual

Reimplemented in protocols::match::upstream::OriginalBackboneBuildPoint.

Definition at line 47 of file ScaffoldBuildPoint.cc.

References protocols::match::upstream::OriginalBackboneBuildPoint::compatible().

Size protocols::match::upstream::ScaffoldBuildPoint::index ( ) const

inline

Definition at line 77 of file ScaffoldBuildPoint.hh.

References index_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::build(), protocols::match::upstream::ProteinUpstreamBuilder::compatible(), protocols::match::downstream::SecondaryMatcherToDownstreamResidue::prepare_for_hit_generation_at_target_build_point(), protocols::match::downstream::SecondaryMatcherToUpstreamResidue::prepare_for_hit_generation_at_target_build_point(), protocols::match::upstream::ProteinUpstreamBuilder::recover_hits(), and protocols::match::upstream::DunbrackSCSampler::samples().

void protocols::match::upstream::ScaffoldBuildPoint::index

(

Size

setting)

Definition at line 57 of file ScaffoldBuildPoint.cc.

References index_.

virtual void protocols::match::upstream::ScaffoldBuildPoint::insert ( Size  seqpos_to_insert_at, Hit const &  hit, UpstreamBuilderCOP  builder, core::pose::Pose &  pose  ) const

pure virtual

Implemented in protocols::match::upstream::OriginalBackboneBuildPoint.

virtual Size protocols::match::upstream::ScaffoldBuildPoint::original_insertion_point ( ) const

pure virtual

Inform the calling function where in the original scaffold this build point should be inserted. If the output pose from a matching has a different number of residues than the original scaffold, then the calling function must determine where the hit from this build point should be inserted.

Implemented in protocols::match::upstream::OriginalBackboneBuildPoint.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::build(), protocols::match::upstream::ProteinUpstreamBuilder::initialize_rescoords(), protocols::match::downstream::SecondaryMatcherToDownstreamResidue::prepare_for_hit_generation_at_target_build_point(), and protocols::match::downstream::SecondaryMatcherToUpstreamResidue::prepare_for_hit_generation_at_target_build_point().

Member Data Documentation

Size protocols::match::upstream::ScaffoldBuildPoint::index_

private

Definition at line 81 of file ScaffoldBuildPoint.hh.

Referenced by index().

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The documentation for this class was generated from the following files:

• src/protocols/match/upstream/ScaffoldBuildPoint.hh
• src/protocols/match/upstream/ScaffoldBuildPoint.cc