#include <ParallelBetaPairingPreferenceFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter:

Collaboration diagram for protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef core::Size	Size

typedef core::Real	Real

typedef core::chemical::AA	AA

typedef protocols::filters::Filter	Filter

typedef std::string	String

typedef protocols::filters::FilterOP	FilterOP

typedef core::pose::Pose	Pose

typedef utility::tag::TagPtr	TagPtr

typedef protocols::filters::Filters_map	Filters_map

typedef protocols::moves::DataMap	DataMap

typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	ParallelBetaPairingPreferenceFilter ()

	ParallelBetaPairingPreferenceFilter (ParallelBetaPairingPreferenceFilter const &rval)

virtual	~ParallelBetaPairingPreferenceFilter ()

virtual FilterOP	clone () const

virtual FilterOP	fresh_instance () const

void	filter_value (Real const value)

Real	compute (Pose const &pose) const
	compute number of contacts More...

Real	score_pairmatrix (AA aa1, AA aa2) const
	refer score of residue pair More...

virtual Real	report_sm (Pose const &pose) const
	used to report score More...

virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...

virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual void	parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
Real	filter_value_

utility::vector1 < utility::vector1< Real > >	score_pairmatrix_

bool	verbose_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 44 of file ParallelBetaPairingPreferenceFilter.hh.

Member Typedef Documentation

typedef core::chemical::AA protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::AA

Definition at line 51 of file ParallelBetaPairingPreferenceFilter.hh.

typedef protocols::moves::DataMap protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::DataMap

Definition at line 59 of file ParallelBetaPairingPreferenceFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Filter

Definition at line 52 of file ParallelBetaPairingPreferenceFilter.hh.

typedef protocols::filters::FilterOP protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::FilterOP

Definition at line 54 of file ParallelBetaPairingPreferenceFilter.hh.

typedef protocols::filters::Filters_map protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Filters_map

Definition at line 58 of file ParallelBetaPairingPreferenceFilter.hh.

typedef protocols::moves::Movers_map protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Movers_map

Definition at line 60 of file ParallelBetaPairingPreferenceFilter.hh.

typedef core::pose::Pose protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Pose

Definition at line 55 of file ParallelBetaPairingPreferenceFilter.hh.

typedef core::Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Real

Definition at line 50 of file ParallelBetaPairingPreferenceFilter.hh.

typedef core::Size protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Size

Definition at line 49 of file ParallelBetaPairingPreferenceFilter.hh.

typedef std::string protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::String

Definition at line 53 of file ParallelBetaPairingPreferenceFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Super

Definition at line 47 of file ParallelBetaPairingPreferenceFilter.hh.

typedef utility::tag::TagPtr protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::TagPtr

Definition at line 57 of file ParallelBetaPairingPreferenceFilter.hh.

Constructor & Destructor Documentation

protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::ParallelBetaPairingPreferenceFilter ( )

Definition at line 49 of file ParallelBetaPairingPreferenceFilter.cc.

References core::chemical::aa_from_oneletter_code(), core::chemical::aa_pro, and score_pairmatrix_.

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::ParallelBetaPairingPreferenceFilter ( ParallelBetaPairingPreferenceFilter const & rval)

Definition at line 83 of file ParallelBetaPairingPreferenceFilter.cc.

virtual protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::~ParallelBetaPairingPreferenceFilter ( )

inlinevirtual

Definition at line 76 of file ParallelBetaPairingPreferenceFilter.hh.

Member Function Documentation

bool protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::apply ( Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 117 of file ParallelBetaPairingPreferenceFilter.cc.

References compute(), filter_value_, and protocols::filters::Filter::score().

virtual FilterOP protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 83 of file ParallelBetaPairingPreferenceFilter.hh.

References ParallelBetaPairingPreferenceFilter().

ParallelBetaPairingPreferenceFilter::Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::compute ( Pose const & pose) const

compute number of contacts

Definition at line 139 of file ParallelBetaPairingPreferenceFilter.cc.

References core::pose::Pose::aa(), protocols::fldsgn::topology::calc_strand_pairing_set(), core::chemical::oneletter_code_from_aa(), protocols::filters::Filter::score(), score_pairmatrix(), core::pose::Pose::total_residue(), protocols::fldsgn::TR(), and verbose_.

Referenced by apply(), report(), and report_sm().

void protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::filter_value ( Real const value)

Definition at line 93 of file ParallelBetaPairingPreferenceFilter.cc.

References filter_value_.

Referenced by parse_my_tag().

virtual FilterOP protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 86 of file ParallelBetaPairingPreferenceFilter.hh.

References ParallelBetaPairingPreferenceFilter().

void protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::parse_my_tag	(	TagPtr const	tag,
		DataMap &	,
		Filters_map const &	,
		Movers_map const &	,
		Pose const &
	)