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TrieCountPair1BC3.hh
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3 //
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9 
10 /// @file core/scoring/etable/etrie/TrieCountPair1BC3.hh
11 /// @brief
12 /// @author Andrew Leaver-Fay (aleaverfay@gmail.com)
13 
14 #ifndef INCLUDED_core_scoring_etable_etrie_TrieCountPair1BC3_hh
15 #define INCLUDED_core_scoring_etable_etrie_TrieCountPair1BC3_hh
16 
17 // Unit Headers
18 #include <core/scoring/etable/etrie/TrieCountPair1BC3.fwd.hh>
19 
20 // Package Headers
21 #include <core/scoring/etable/etrie/CountPairData_1_1.fwd.hh>
22 #include <core/scoring/etable/etrie/CountPairData_1_2.fwd.hh>
23 #include <core/scoring/etable/etrie/CountPairData_1_3.fwd.hh>
24 #include <core/scoring/etable/etrie/CountPairDataGeneric.fwd.hh>
25 
26 #include <core/scoring/trie/TrieCountPairBase.hh>
27 #include <core/scoring/trie/RotamerTrie.fwd.hh>
28 
29 #include <core/scoring/etable/count_pair/CountPairCrossover3.hh>
30 #include <core/scoring/etable/EtableEnergy.fwd.hh>
31 
32 #include <core/scoring/hbonds/HBondEnergy.fwd.hh>
33 #include <core/scoring/hbonds/hbtrie/HBCPData.fwd.hh>
34 
35 //XRW_B_T1
36 //#include <core/scoring/etable/CoarseEtableEnergy.fwd.hh>
37 //XRW_E_T1
38 #include <core/scoring/hackelec/HackElecEnergy.fwd.hh>
39 #include <core/scoring/methods/MMLJEnergyInter.fwd.hh>
40 
41 // Project Headers
42 #include <core/types.hh>
43 
44 // Objexx FCL Headers
45 #include <ObjexxFCL/FArray2D.fwd.hh>
46 
47 namespace core {
48 namespace scoring {
49 namespace etable {
50 namespace etrie {
51 
52 class TrieCountPair1BC3 : public trie::TrieCountPairBase
53 {
54 private:
55  Size const res1_cpdat_;
56  Size const res2_cpdat_;
57 
58 public:
59 
60  TrieCountPair1BC3( Size res1_cpdat_for_res2, Size res2_cpdat_for_res1 )
61  :
62  res1_cpdat_( res1_cpdat_for_res2 ),
63  res2_cpdat_( res2_cpdat_for_res1 )
64  {}
65 
66  ///------------ Useful Functions ------------------///
67  template < class CPDATA1, class CPDATA2 >
68  bool operator () ( CPDATA1 const & at1dat, CPDATA2 const & at2dat, Real & weight, Size & path_dist )
69  {
70  path_dist = at1dat.conn_dist( res1_cpdat_ ) + at2dat.conn_dist( res2_cpdat_ ) + 1;
71  //std::cout << "trie_cp1bc3 " << at1dat.conn_dist() << " " << at2dat.conn_dist() << std::endl;
72  return count_pair::CountPairCrossover3::count_at_path_distance( path_dist, weight );
73  }
74 
75  static
76  void
77  print();
78 
79 
80  ///---------- TYPE RESOLUTION FUNCTIONS ----------///
81  //////////////////////////////////// EtableEnergy -- table based /////////////////////////////////
82  virtual
83  void
84  resolve_trie_vs_trie(
85  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
86  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
87  etable::TableLookupEvaluator const & sfxn,
88  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
89  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
90 
91  virtual
92  void
93  resolve_trie_vs_trie(
94  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
95  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
96  etable::TableLookupEvaluator const & sfxn,
97  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
98  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
99 
100  virtual
101  void
102  resolve_trie_vs_trie(
103  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
104  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
105  etable::TableLookupEvaluator const & sfxn,
106  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
107  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
108 
109  virtual
110  void
111  resolve_trie_vs_trie(
112  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
113  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
114  etable::TableLookupEvaluator const & sfxn,
115  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
116  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
117 
118  virtual
119  void
120  resolve_trie_vs_trie(
121  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
122  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
123  etable::TableLookupEvaluator const & sfxn,
124  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
125  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
126 
127  virtual
128  void
129  resolve_trie_vs_trie(
130  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
131  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
132  etable::TableLookupEvaluator const & sfxn,
133  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
134  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
135 
136  virtual
137  void
138  resolve_trie_vs_trie(
139  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
140  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
141  etable::TableLookupEvaluator const & sfxn,
142  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
143  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
144 
145  virtual
146  void
147  resolve_trie_vs_trie(
148  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
149  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
150  etable::TableLookupEvaluator const & sfxn,
151  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
152  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
153 
154  virtual
155  void
156  resolve_trie_vs_trie(
157  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
158  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
159  etable::TableLookupEvaluator const & sfxn,
160  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
161  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
162 
163  virtual
164  void
165  resolve_trie_vs_trie(
166  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
167  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
168  etable::TableLookupEvaluator const & sfxn,
169  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
170  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
171 
172  virtual
173  void
174  resolve_trie_vs_trie(
175  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
176  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
177  etable::TableLookupEvaluator const & sfxn,
178  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
179  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
180 
181  virtual
182  void
183  resolve_trie_vs_trie(
184  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
185  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
186  etable::TableLookupEvaluator const & sfxn,
187  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
188  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
189 
190  virtual
191  void
192  resolve_trie_vs_trie(
193  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
194  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
195  etable::TableLookupEvaluator const & sfxn,
196  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
197  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
198 
199  virtual
200  void
201  resolve_trie_vs_trie(
202  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
203  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
204  etable::TableLookupEvaluator const & sfxn,
205  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
206  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
207 
208  virtual
209  void
210  resolve_trie_vs_trie(
211  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
212  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
213  etable::TableLookupEvaluator const & sfxn,
214  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
215  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
216 
217  virtual
218  void
219  resolve_trie_vs_trie(
220  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
221  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
222  etable::TableLookupEvaluator const & sfxn,
223  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
224  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
225 
226  virtual
227  void
228  resolve_trie_vs_path(
229  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
230  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
231  etable::TableLookupEvaluator const & sfxn,
232  utility::vector1< core::PackerEnergy > & pair_energy_vector,
233  utility::vector1< core::PackerEnergy > & temp_vector);
234 
235  virtual
236  void
237  resolve_trie_vs_path(
238  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
239  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
240  etable::TableLookupEvaluator const & sfxn,
241  utility::vector1< core::PackerEnergy > & pair_energy_vector,
242  utility::vector1< core::PackerEnergy > & temp_vector);
243 
244  virtual
245  void
246  resolve_trie_vs_path(
247  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
248  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
249  etable::TableLookupEvaluator const & sfxn,
250  utility::vector1< core::PackerEnergy > & pair_energy_vector,
251  utility::vector1< core::PackerEnergy > & temp_vector);
252 
253  virtual
254  void
255  resolve_trie_vs_path(
256  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
257  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
258  etable::TableLookupEvaluator const & sfxn,
259  utility::vector1< core::PackerEnergy > & pair_energy_vector,
260  utility::vector1< core::PackerEnergy > & temp_vector);
261 
262  virtual
263  void
264  resolve_trie_vs_path(
265  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
266  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
267  etable::TableLookupEvaluator const & sfxn,
268  utility::vector1< core::PackerEnergy > & pair_energy_vector,
269  utility::vector1< core::PackerEnergy > & temp_vector);
270 
271  virtual
272  void
273  resolve_trie_vs_path(
274  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
275  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
276  etable::TableLookupEvaluator const & sfxn,
277  utility::vector1< core::PackerEnergy > & pair_energy_vector,
278  utility::vector1< core::PackerEnergy > & temp_vector);
279 
280  virtual
281  void
282  resolve_trie_vs_path(
283  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
284  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
285  etable::TableLookupEvaluator const & sfxn,
286  utility::vector1< core::PackerEnergy > & pair_energy_vector,
287  utility::vector1< core::PackerEnergy > & temp_vector);
288 
289  virtual
290  void
291  resolve_trie_vs_path(
292  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
293  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
294  etable::TableLookupEvaluator const & sfxn,
295  utility::vector1< core::PackerEnergy > & pair_energy_vector,
296  utility::vector1< core::PackerEnergy > & temp_vector);
297 
298  virtual
299  void
300  resolve_trie_vs_path(
301  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
302  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
303  etable::TableLookupEvaluator const & sfxn,
304  utility::vector1< core::PackerEnergy > & pair_energy_vector,
305  utility::vector1< core::PackerEnergy > & temp_vector);
306 
307  virtual
308  void
309  resolve_trie_vs_path(
310  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
311  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
312  etable::TableLookupEvaluator const & sfxn,
313  utility::vector1< core::PackerEnergy > & pair_energy_vector,
314  utility::vector1< core::PackerEnergy > & temp_vector);
315 
316  virtual
317  void
318  resolve_trie_vs_path(
319  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
320  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
321  etable::TableLookupEvaluator const & sfxn,
322  utility::vector1< core::PackerEnergy > & pair_energy_vector,
323  utility::vector1< core::PackerEnergy > & temp_vector);
324 
325  virtual
326  void
327  resolve_trie_vs_path(
328  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
329  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
330  etable::TableLookupEvaluator const & sfxn,
331  utility::vector1< core::PackerEnergy > & pair_energy_vector,
332  utility::vector1< core::PackerEnergy > & temp_vector);
333 
334  virtual
335  void
336  resolve_trie_vs_path(
337  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
338  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
339  etable::TableLookupEvaluator const & sfxn,
340  utility::vector1< core::PackerEnergy > & pair_energy_vector,
341  utility::vector1< core::PackerEnergy > & temp_vector);
342 
343  virtual
344  void
345  resolve_trie_vs_path(
346  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
347  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
348  etable::TableLookupEvaluator const & sfxn,
349  utility::vector1< core::PackerEnergy > & pair_energy_vector,
350  utility::vector1< core::PackerEnergy > & temp_vector);
351 
352  virtual
353  void
354  resolve_trie_vs_path(
355  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
356  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
357  etable::TableLookupEvaluator const & sfxn,
358  utility::vector1< core::PackerEnergy > & pair_energy_vector,
359  utility::vector1< core::PackerEnergy > & temp_vector);
360 
361  virtual
362  void
363  resolve_trie_vs_path(
364  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
365  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
366  etable::TableLookupEvaluator const & sfxn,
367  utility::vector1< core::PackerEnergy > & pair_energy_vector,
368  utility::vector1< core::PackerEnergy > & temp_vector);
369 
370 
371  //////////////////////////////////// EtableEnergy -- analytic /////////////////////////////////
372 
373  virtual
374  void
375  resolve_trie_vs_trie(
376  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
377  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
378  etable::AnalyticEtableEvaluator const & sfxn,
379  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
380  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
381 
382  virtual
383  void
384  resolve_trie_vs_trie(
385  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
386  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
387  etable::AnalyticEtableEvaluator const & sfxn,
388  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
389  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
390 
391  virtual
392  void
393  resolve_trie_vs_trie(
394  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
395  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
396  etable::AnalyticEtableEvaluator const & sfxn,
397  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
398  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
399 
400  virtual
401  void
402  resolve_trie_vs_trie(
403  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
404  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
405  etable::AnalyticEtableEvaluator const & sfxn,
406  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
407  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
408 
409  virtual
410  void
411  resolve_trie_vs_trie(
412  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
413  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
414  etable::AnalyticEtableEvaluator const & sfxn,
415  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
416  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
417 
418  virtual
419  void
420  resolve_trie_vs_trie(
421  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
422  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
423  etable::AnalyticEtableEvaluator const & sfxn,
424  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
425  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
426 
427  virtual
428  void
429  resolve_trie_vs_trie(
430  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
431  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
432  etable::AnalyticEtableEvaluator const & sfxn,
433  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
434  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
435 
436  virtual
437  void
438  resolve_trie_vs_trie(
439  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
440  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
441  etable::AnalyticEtableEvaluator const & sfxn,
442  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
443  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
444 
445  virtual
446  void
447  resolve_trie_vs_trie(
448  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
449  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
450  etable::AnalyticEtableEvaluator const & sfxn,
451  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
452  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
453 
454  virtual
455  void
456  resolve_trie_vs_trie(
457  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
458  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
459  etable::AnalyticEtableEvaluator const & sfxn,
460  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
461  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
462 
463  virtual
464  void
465  resolve_trie_vs_trie(
466  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
467  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
468  etable::AnalyticEtableEvaluator const & sfxn,
469  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
470  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
471 
472  virtual
473  void
474  resolve_trie_vs_trie(
475  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
476  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
477  etable::AnalyticEtableEvaluator const & sfxn,
478  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
479  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
480 
481  virtual
482  void
483  resolve_trie_vs_trie(
484  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
485  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
486  etable::AnalyticEtableEvaluator const & sfxn,
487  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
488  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
489 
490  virtual
491  void
492  resolve_trie_vs_trie(
493  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
494  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
495  etable::AnalyticEtableEvaluator const & sfxn,
496  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
497  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
498 
499  virtual
500  void
501  resolve_trie_vs_trie(
502  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
503  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
504  etable::AnalyticEtableEvaluator const & sfxn,
505  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
506  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
507 
508  virtual
509  void
510  resolve_trie_vs_trie(
511  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
512  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
513  etable::AnalyticEtableEvaluator const & sfxn,
514  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
515  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
516 
517  virtual
518  void
519  resolve_trie_vs_path(
520  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
521  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
522  etable::AnalyticEtableEvaluator const & sfxn,
523  utility::vector1< core::PackerEnergy > & pair_energy_vector,
524  utility::vector1< core::PackerEnergy > & temp_vector);
525 
526  virtual
527  void
528  resolve_trie_vs_path(
529  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
530  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
531  etable::AnalyticEtableEvaluator const & sfxn,
532  utility::vector1< core::PackerEnergy > & pair_energy_vector,
533  utility::vector1< core::PackerEnergy > & temp_vector);
534 
535  virtual
536  void
537  resolve_trie_vs_path(
538  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
539  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
540  etable::AnalyticEtableEvaluator const & sfxn,
541  utility::vector1< core::PackerEnergy > & pair_energy_vector,
542  utility::vector1< core::PackerEnergy > & temp_vector);
543 
544  virtual
545  void
546  resolve_trie_vs_path(
547  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
548  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
549  etable::AnalyticEtableEvaluator const & sfxn,
550  utility::vector1< core::PackerEnergy > & pair_energy_vector,
551  utility::vector1< core::PackerEnergy > & temp_vector);
552 
553  virtual
554  void
555  resolve_trie_vs_path(
556  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
557  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
558  etable::AnalyticEtableEvaluator const & sfxn,
559  utility::vector1< core::PackerEnergy > & pair_energy_vector,
560  utility::vector1< core::PackerEnergy > & temp_vector);
561 
562  virtual
563  void
564  resolve_trie_vs_path(
565  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
566  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
567  etable::AnalyticEtableEvaluator const & sfxn,
568  utility::vector1< core::PackerEnergy > & pair_energy_vector,
569  utility::vector1< core::PackerEnergy > & temp_vector);
570 
571  virtual
572  void
573  resolve_trie_vs_path(
574  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
575  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
576  etable::AnalyticEtableEvaluator const & sfxn,
577  utility::vector1< core::PackerEnergy > & pair_energy_vector,
578  utility::vector1< core::PackerEnergy > & temp_vector);
579 
580  virtual
581  void
582  resolve_trie_vs_path(
583  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
584  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
585  etable::AnalyticEtableEvaluator const & sfxn,
586  utility::vector1< core::PackerEnergy > & pair_energy_vector,
587  utility::vector1< core::PackerEnergy > & temp_vector);
588 
589  virtual
590  void
591  resolve_trie_vs_path(
592  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
593  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
594  etable::AnalyticEtableEvaluator const & sfxn,
595  utility::vector1< core::PackerEnergy > & pair_energy_vector,
596  utility::vector1< core::PackerEnergy > & temp_vector);
597 
598  virtual
599  void
600  resolve_trie_vs_path(
601  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
602  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
603  etable::AnalyticEtableEvaluator const & sfxn,
604  utility::vector1< core::PackerEnergy > & pair_energy_vector,
605  utility::vector1< core::PackerEnergy > & temp_vector);
606 
607  virtual
608  void
609  resolve_trie_vs_path(
610  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
611  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
612  etable::AnalyticEtableEvaluator const & sfxn,
613  utility::vector1< core::PackerEnergy > & pair_energy_vector,
614  utility::vector1< core::PackerEnergy > & temp_vector);
615 
616  virtual
617  void
618  resolve_trie_vs_path(
619  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
620  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
621  etable::AnalyticEtableEvaluator const & sfxn,
622  utility::vector1< core::PackerEnergy > & pair_energy_vector,
623  utility::vector1< core::PackerEnergy > & temp_vector);
624 
625  virtual
626  void
627  resolve_trie_vs_path(
628  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
629  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
630  etable::AnalyticEtableEvaluator const & sfxn,
631  utility::vector1< core::PackerEnergy > & pair_energy_vector,
632  utility::vector1< core::PackerEnergy > & temp_vector);
633 
634  virtual
635  void
636  resolve_trie_vs_path(
637  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
638  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
639  etable::AnalyticEtableEvaluator const & sfxn,
640  utility::vector1< core::PackerEnergy > & pair_energy_vector,
641  utility::vector1< core::PackerEnergy > & temp_vector);
642 
643  virtual
644  void
645  resolve_trie_vs_path(
646  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
647  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
648  etable::AnalyticEtableEvaluator const & sfxn,
649  utility::vector1< core::PackerEnergy > & pair_energy_vector,
650  utility::vector1< core::PackerEnergy > & temp_vector);
651 
652  virtual
653  void
654  resolve_trie_vs_path(
655  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
656  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
657  etable::AnalyticEtableEvaluator const & sfxn,
658  utility::vector1< core::PackerEnergy > & pair_energy_vector,
659  utility::vector1< core::PackerEnergy > & temp_vector);
660 
661  // HBONDS
662  virtual
663  void
664  resolve_trie_vs_trie(
665  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
666  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
667  hbonds::HBondEnergy const & sfxn,
668  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
669  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
670 
671 
672  virtual
673  void
674  resolve_trie_vs_path(
675  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
676  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
677  hbonds::HBondEnergy const & sfxn,
678  utility::vector1< core::PackerEnergy > & pair_energy_vector,
679  utility::vector1< core::PackerEnergy > & temp_vector);
680 
681 /// Hack Elec Energy
682 
683 
684  virtual
685  void
686  resolve_trie_vs_trie(
687  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
688  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
689  hackelec::HackElecEnergy const & sfxn,
690  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
691  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
692 
693  virtual
694  void
695  resolve_trie_vs_trie(
696  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
697  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
698  hackelec::HackElecEnergy const & sfxn,
699  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
700  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
701 
702  virtual
703  void
704  resolve_trie_vs_trie(
705  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
706  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
707  hackelec::HackElecEnergy const & sfxn,
708  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
709  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
710 
711  virtual
712  void
713  resolve_trie_vs_trie(
714  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
715  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
716  hackelec::HackElecEnergy const & sfxn,
717  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
718  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
719 
720  virtual
721  void
722  resolve_trie_vs_trie(
723  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
724  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
725  hackelec::HackElecEnergy const & sfxn,
726  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
727  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
728 
729  virtual
730  void
731  resolve_trie_vs_trie(
732  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
733  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
734  hackelec::HackElecEnergy const & sfxn,
735  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
736  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
737 
738  virtual
739  void
740  resolve_trie_vs_trie(
741  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
742  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
743  hackelec::HackElecEnergy const & sfxn,
744  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
745  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
746 
747  virtual
748  void
749  resolve_trie_vs_trie(
750  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
751  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
752  hackelec::HackElecEnergy const & sfxn,
753  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
754  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
755 
756  virtual
757  void
758  resolve_trie_vs_trie(
759  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
760  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
761  hackelec::HackElecEnergy const & sfxn,
762  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
763  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
764 
765  virtual
766  void
767  resolve_trie_vs_trie(
768  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
769  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
770  hackelec::HackElecEnergy const & sfxn,
771  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
772  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
773 
774  virtual
775  void
776  resolve_trie_vs_trie(
777  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
778  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
779  hackelec::HackElecEnergy const & sfxn,
780  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
781  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
782 
783  virtual
784  void
785  resolve_trie_vs_trie(
786  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
787  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
788  hackelec::HackElecEnergy const & sfxn,
789  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
790  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
791 
792  virtual
793  void
794  resolve_trie_vs_trie(
795  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
796  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
797  hackelec::HackElecEnergy const & sfxn,
798  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
799  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
800 
801  virtual
802  void
803  resolve_trie_vs_trie(
804  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
805  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
806  hackelec::HackElecEnergy const & sfxn,
807  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
808  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
809 
810  virtual
811  void
812  resolve_trie_vs_trie(
813  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
814  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
815  hackelec::HackElecEnergy const & sfxn,
816  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
817  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
818 
819  virtual
820  void
821  resolve_trie_vs_trie(
822  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
823  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
824  hackelec::HackElecEnergy const & sfxn,
825  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
826  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
827 
828  virtual
829  void
830  resolve_trie_vs_path(
831  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
832  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
833  hackelec::HackElecEnergy const & sfxn,
834  utility::vector1< core::PackerEnergy > & pair_energy_vector,
835  utility::vector1< core::PackerEnergy > & temp_vector);
836 
837  virtual
838  void
839  resolve_trie_vs_path(
840  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
841  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
842  hackelec::HackElecEnergy const & sfxn,
843  utility::vector1< core::PackerEnergy > & pair_energy_vector,
844  utility::vector1< core::PackerEnergy > & temp_vector);
845 
846  virtual
847  void
848  resolve_trie_vs_path(
849  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
850  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
851  hackelec::HackElecEnergy const & sfxn,
852  utility::vector1< core::PackerEnergy > & pair_energy_vector,
853  utility::vector1< core::PackerEnergy > & temp_vector);
854 
855  virtual
856  void
857  resolve_trie_vs_path(
858  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
859  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
860  hackelec::HackElecEnergy const & sfxn,
861  utility::vector1< core::PackerEnergy > & pair_energy_vector,
862  utility::vector1< core::PackerEnergy > & temp_vector);
863 
864  virtual
865  void
866  resolve_trie_vs_path(
867  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
868  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
869  hackelec::HackElecEnergy const & sfxn,
870  utility::vector1< core::PackerEnergy > & pair_energy_vector,
871  utility::vector1< core::PackerEnergy > & temp_vector);
872 
873  virtual
874  void
875  resolve_trie_vs_path(
876  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
877  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
878  hackelec::HackElecEnergy const & sfxn,
879  utility::vector1< core::PackerEnergy > & pair_energy_vector,
880  utility::vector1< core::PackerEnergy > & temp_vector);
881 
882  virtual
883  void
884  resolve_trie_vs_path(
885  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
886  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
887  hackelec::HackElecEnergy const & sfxn,
888  utility::vector1< core::PackerEnergy > & pair_energy_vector,
889  utility::vector1< core::PackerEnergy > & temp_vector);
890 
891  virtual
892  void
893  resolve_trie_vs_path(
894  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
895  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
896  hackelec::HackElecEnergy const & sfxn,
897  utility::vector1< core::PackerEnergy > & pair_energy_vector,
898  utility::vector1< core::PackerEnergy > & temp_vector);
899 
900  virtual
901  void
902  resolve_trie_vs_path(
903  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
904  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
905  hackelec::HackElecEnergy const & sfxn,
906  utility::vector1< core::PackerEnergy > & pair_energy_vector,
907  utility::vector1< core::PackerEnergy > & temp_vector);
908 
909  virtual
910  void
911  resolve_trie_vs_path(
912  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
913  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
914  hackelec::HackElecEnergy const & sfxn,
915  utility::vector1< core::PackerEnergy > & pair_energy_vector,
916  utility::vector1< core::PackerEnergy > & temp_vector);
917 
918  virtual
919  void
920  resolve_trie_vs_path(
921  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
922  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
923  hackelec::HackElecEnergy const & sfxn,
924  utility::vector1< core::PackerEnergy > & pair_energy_vector,
925  utility::vector1< core::PackerEnergy > & temp_vector);
926 
927  virtual
928  void
929  resolve_trie_vs_path(
930  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
931  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
932  hackelec::HackElecEnergy const & sfxn,
933  utility::vector1< core::PackerEnergy > & pair_energy_vector,
934  utility::vector1< core::PackerEnergy > & temp_vector);
935 
936  virtual
937  void
938  resolve_trie_vs_path(
939  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
940  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
941  hackelec::HackElecEnergy const & sfxn,
942  utility::vector1< core::PackerEnergy > & pair_energy_vector,
943  utility::vector1< core::PackerEnergy > & temp_vector);
944 
945  virtual
946  void
947  resolve_trie_vs_path(
948  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
949  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
950  hackelec::HackElecEnergy const & sfxn,
951  utility::vector1< core::PackerEnergy > & pair_energy_vector,
952  utility::vector1< core::PackerEnergy > & temp_vector);
953 
954  virtual
955  void
956  resolve_trie_vs_path(
957  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
958  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
959  hackelec::HackElecEnergy const & sfxn,
960  utility::vector1< core::PackerEnergy > & pair_energy_vector,
961  utility::vector1< core::PackerEnergy > & temp_vector);
962 
963  virtual
964  void
965  resolve_trie_vs_path(
966  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
967  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
968  hackelec::HackElecEnergy const & sfxn,
969  utility::vector1< core::PackerEnergy > & pair_energy_vector,
970  utility::vector1< core::PackerEnergy > & temp_vector);
971 
972  /////////////////////////// MMLJEnergyInter //////////////////////////////
973  virtual
974  void
975  resolve_trie_vs_trie(
976  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
977  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
978  methods::MMLJEnergyInter const & sfxn,
979  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
980  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
981 
982  virtual
983  void
984  resolve_trie_vs_trie(
985  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
986  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
987  methods::MMLJEnergyInter const & sfxn,
988  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
989  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
990 
991  virtual
992  void
993  resolve_trie_vs_trie(
994  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
995  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
996  methods::MMLJEnergyInter const & sfxn,
997  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
998  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
999 
1000  virtual
1001  void
1002  resolve_trie_vs_trie(
1003  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1004  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1005  methods::MMLJEnergyInter const & sfxn,
1006  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1007  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1008 
1009  virtual
1010  void
1011  resolve_trie_vs_trie(
1012  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1013  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1014  methods::MMLJEnergyInter const & sfxn,
1015  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1016  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1017 
1018  virtual
1019  void
1020  resolve_trie_vs_trie(
1021  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1022  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1023  methods::MMLJEnergyInter const & sfxn,
1024  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1025  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1026 
1027  virtual
1028  void
1029  resolve_trie_vs_trie(
1030  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1031  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1032  methods::MMLJEnergyInter const & sfxn,
1033  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1034  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1035 
1036  virtual
1037  void
1038  resolve_trie_vs_trie(
1039  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1040  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1041  methods::MMLJEnergyInter const & sfxn,
1042  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1043  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1044 
1045  virtual
1046  void
1047  resolve_trie_vs_trie(
1048  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1049  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1050  methods::MMLJEnergyInter const & sfxn,
1051  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1052  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1053 
1054  virtual
1055  void
1056  resolve_trie_vs_trie(
1057  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1058  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1059  methods::MMLJEnergyInter const & sfxn,
1060  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1061  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1062 
1063  virtual
1064  void
1065  resolve_trie_vs_trie(
1066  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1067  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1068  methods::MMLJEnergyInter const & sfxn,
1069  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1070  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1071 
1072  virtual
1073  void
1074  resolve_trie_vs_trie(
1075  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1076  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1077  methods::MMLJEnergyInter const & sfxn,
1078  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1079  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1080 
1081  virtual
1082  void
1083  resolve_trie_vs_trie(
1084  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1085  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1086  methods::MMLJEnergyInter const & sfxn,
1087  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1088  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1089 
1090  virtual
1091  void
1092  resolve_trie_vs_trie(
1093  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1094  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1095  methods::MMLJEnergyInter const & sfxn,
1096  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1097  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1098 
1099  virtual
1100  void
1101  resolve_trie_vs_trie(
1102  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1103  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1104  methods::MMLJEnergyInter const & sfxn,
1105  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1106  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1107 
1108  virtual
1109  void
1110  resolve_trie_vs_trie(
1111  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1112  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1113  methods::MMLJEnergyInter const & sfxn,
1114  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1115  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1116 
1117  virtual
1118  void
1119  resolve_trie_vs_path(
1120  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1121  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1122  methods::MMLJEnergyInter const & sfxn,
1123  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1124  utility::vector1< core::PackerEnergy > & temp_vector);
1125 
1126  virtual
1127  void
1128  resolve_trie_vs_path(
1129  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1130  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1131  methods::MMLJEnergyInter const & sfxn,
1132  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1133  utility::vector1< core::PackerEnergy > & temp_vector);
1134 
1135  virtual
1136  void
1137  resolve_trie_vs_path(
1138  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1139  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1140  methods::MMLJEnergyInter const & sfxn,
1141  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1142  utility::vector1< core::PackerEnergy > & temp_vector);
1143 
1144  virtual
1145  void
1146  resolve_trie_vs_path(
1147  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1148  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1149  methods::MMLJEnergyInter const & sfxn,
1150  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1151  utility::vector1< core::PackerEnergy > & temp_vector);
1152 
1153  virtual
1154  void
1155  resolve_trie_vs_path(
1156  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1157  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1158  methods::MMLJEnergyInter const & sfxn,
1159  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1160  utility::vector1< core::PackerEnergy > & temp_vector);
1161 
1162  virtual
1163  void
1164  resolve_trie_vs_path(
1165  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1166  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1167  methods::MMLJEnergyInter const & sfxn,
1168  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1169  utility::vector1< core::PackerEnergy > & temp_vector);
1170 
1171  virtual
1172  void
1173  resolve_trie_vs_path(
1174  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1175  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1176  methods::MMLJEnergyInter const & sfxn,
1177  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1178  utility::vector1< core::PackerEnergy > & temp_vector);
1179 
1180  virtual
1181  void
1182  resolve_trie_vs_path(
1183  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1184  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1185  methods::MMLJEnergyInter const & sfxn,
1186  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1187  utility::vector1< core::PackerEnergy > & temp_vector);
1188 
1189  virtual
1190  void
1191  resolve_trie_vs_path(
1192  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1193  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1194  methods::MMLJEnergyInter const & sfxn,
1195  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1196  utility::vector1< core::PackerEnergy > & temp_vector);
1197 
1198  virtual
1199  void
1200  resolve_trie_vs_path(
1201  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1202  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1203  methods::MMLJEnergyInter const & sfxn,
1204  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1205  utility::vector1< core::PackerEnergy > & temp_vector);
1206 
1207  virtual
1208  void
1209  resolve_trie_vs_path(
1210  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1211  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1212  methods::MMLJEnergyInter const & sfxn,
1213  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1214  utility::vector1< core::PackerEnergy > & temp_vector);
1215 
1216  virtual
1217  void
1218  resolve_trie_vs_path(
1219  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1220  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1221  methods::MMLJEnergyInter const & sfxn,
1222  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1223  utility::vector1< core::PackerEnergy > & temp_vector);
1224 
1225  virtual
1226  void
1227  resolve_trie_vs_path(
1228  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1229  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1230  methods::MMLJEnergyInter const & sfxn,
1231  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1232  utility::vector1< core::PackerEnergy > & temp_vector);
1233 
1234  virtual
1235  void
1236  resolve_trie_vs_path(
1237  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1238  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1239  methods::MMLJEnergyInter const & sfxn,
1240  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1241  utility::vector1< core::PackerEnergy > & temp_vector);
1242 
1243  virtual
1244  void
1245  resolve_trie_vs_path(
1246  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1247  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1248  methods::MMLJEnergyInter const & sfxn,
1249  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1250  utility::vector1< core::PackerEnergy > & temp_vector);
1251 
1252  virtual
1253  void
1254  resolve_trie_vs_path(
1255  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1256  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1257  methods::MMLJEnergyInter const & sfxn,
1258  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1259  utility::vector1< core::PackerEnergy > & temp_vector);
1260 
1261 };
1262 
1263 
1264 
1265 } // namespace etrie
1266 } // namespace etable
1267 } // namespace scoring
1268 } // namespace core
1269 
1270 #endif
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