protocols::frag_picker::SidechainContactDistCutoff Class Reference

defines sidechain contact distance cutoffs. More...

#include <SidechainContactDistCutoff.hh>

Inheritance diagram for protocols::frag_picker::SidechainContactDistCutoff:

Collaboration diagram for protocols::frag_picker::SidechainContactDistCutoff:

Public Member Functions
	SidechainContactDistCutoff ()
	SidechainContactDistCutoff (Real scale_factor)
virtual	~SidechainContactDistCutoff ()
Real	get_cutoff (char aa_i, char aa_j)
Real	get_cutoff_squared (char aa_i, char aa_j)
Real	scale_factor ()

Private Member Functions
void	initialize ()

Private Attributes
utility::vector1< char >	aa_map_
std::map< char, Size >	aa_to_index_map_
utility::vector1 < utility::vector1< Real > >	cutoff_
utility::vector1 < utility::vector1< Real > >	cutoff_squared_
Real	scale_factor_

Detailed Description

defines sidechain contact distance cutoffs.

Detailed: provides amino acid pair specific distance cutoffs.

Definition at line 38 of file SidechainContactDistCutoff.hh.

Constructor & Destructor Documentation

protocols::frag_picker::SidechainContactDistCutoff::SidechainContactDistCutoff

(

)

Definition at line 46 of file SidechainContactDistCutoff.cc.

protocols::frag_picker::SidechainContactDistCutoff::SidechainContactDistCutoff

(

Real

scale_factor)

Definition at line 50 of file SidechainContactDistCutoff.cc.

protocols::frag_picker::SidechainContactDistCutoff::~SidechainContactDistCutoff ( )

virtual

Definition at line 40 of file SidechainContactDistCutoff.cc.

Member Function Documentation

Real protocols::frag_picker::SidechainContactDistCutoff::get_cutoff	(	char	aa_i,
		char	aa_j
	)

Definition at line 146 of file SidechainContactDistCutoff.cc.

Real protocols::frag_picker::SidechainContactDistCutoff::get_cutoff_squared	(	char	aa_i,
		char	aa_j
	)

Definition at line 150 of file SidechainContactDistCutoff.cc.

void protocols::frag_picker::SidechainContactDistCutoff::initialize ( )

private

Definition at line 55 of file SidechainContactDistCutoff.cc.

References core::chemical::aa_from_name(), core::chemical::oneletter_code_from_aa(), and protocols::frag_picker::TR().

Real protocols::frag_picker::SidechainContactDistCutoff::scale_factor

(

)

Definition at line 154 of file SidechainContactDistCutoff.cc.

Member Data Documentation

utility::vector1<char> protocols::frag_picker::SidechainContactDistCutoff::aa_map_

private

Definition at line 58 of file SidechainContactDistCutoff.hh.

std::map<char,Size> protocols::frag_picker::SidechainContactDistCutoff::aa_to_index_map_

private

Definition at line 59 of file SidechainContactDistCutoff.hh.

utility::vector1<utility::vector1<Real> > protocols::frag_picker::SidechainContactDistCutoff::cutoff_

private

Definition at line 60 of file SidechainContactDistCutoff.hh.

utility::vector1<utility::vector1<Real> > protocols::frag_picker::SidechainContactDistCutoff::cutoff_squared_

private

Definition at line 61 of file SidechainContactDistCutoff.hh.

Real protocols::frag_picker::SidechainContactDistCutoff::scale_factor_

private

Definition at line 62 of file SidechainContactDistCutoff.hh.

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/SidechainContactDistCutoff.hh
• src/protocols/frag_picker/SidechainContactDistCutoff.cc