Classes
class	AbinitioBaseFilter

class	AlaScan

class	AlaScanFilterCreator

class	AtomicContactFilter
	detects atomic (<4Ang) contacts between any two atoms of two residues More...

class	AtomicContactFilterCreator

class	AtomicDistanceFilter
	detects atomic contacts between two atoms of two residues More...

class	AtomicDistanceFilterCreator

class	BatchEvaluator

class	BatchNrEvaluator

class	BuriedUnsatHbondFilter
	filters based on an upper bound # of buried unsatisfied polar residues More...

class	BuriedUnsatHbondFilterCreator

class	CamShiftEvaluator

class	CamShiftEvaluatorCreator
	creator for the CamShiftEvaluatorCreator class More...

class	ChiWellRmsdEvaluator

class	ChiWellRmsdEvaluatorCreator
	creator for the ChiWellRmsdEvaluatorCreator class More...

class	PoseMetricEvaluator

class	COFilter

class	ConservedPosMutationFilter

class	ConservedPosMutationFilterCreator

class	ConstraintScoreCutoffFilter

class	ConstraintScoreCutoffFilterCreator

class	ContactMapEvaluator

class	ContactMapEvaluatorCreator
	creator for the ContactMapEvaluatorCreator class More...

class	DdgFilter

class	DdgFilterCreator

class	DeltaFilter

class	DeltaFilterCreator

class	EnergyPerResidueFilter

class	EnergyPerResidueFilterCreator

class	EvaluatedTrialMover

class	ExpiryFilter

class	ExpiryFilterCreator

class	ExternalEvaluator

class	ExtraScoreEvaluatorCreator
	creator for the ExtraScoreEvaluatorCreator class More...

class	FileExistFilter

class	FileExistFilterCreator

class	FileRemoveFilter

class	FileRemoveFilterCreator

class	HolesFilter

class	HolesFilterCreator

class	InterfaceBindingEnergyDensityFilter

class	InterfaceBindingEnergyDensityFilterCreator

class	InterfaceSasaFilter

class	InterfaceSasaFilterCreator

class	JScoreEvaluator

class	JScoreEvaluatorCreator
	creator for the JScoreEvaluatorCreator class More...

class	JumpEvaluator

class	JumpNrEvaluator

class	JumpNrEvaluatorCreator
	creator for the JumpNrEvaluatorCreator class More...

class	MinValueEvaluator

class	NativeEvaluatorCreator
	creator for the NativeEvaluatorCreator class More...

class	NeighborTypeFilter

class	NeighborTypeFilterCreator

class	NMerPSSMEnergyFilter

class	NMerPSSMEnergyFilterCreator

class	NonSequentialNeighborsFilter

class	NonSequentialNeighborsFilterCreator

class	Operator
	simply take a list of filters and combine them using the operation above More...

class	OperatorFilterCreator

class	RegionalConnections

class	PackerNeighborGraphFilter

class	PackStatFilter

class	PackStatFilterCreator

class	PalesEvaluator

class	PalesEvaluatorCreator
	creator for the PalesEvaluatorCreator class More...

class	PDDFScoreFilter

class	PoolEvaluatorCreator
	creator for the PoolEvaluatorCreator class More...

class	PoseInfoFilter
	detects atomic contacts between two atoms of two residues More...

class	PoseInfoFilterCreator

class	PredictedBurialEvaluator

class	PredictedBurialFnEvaluatorCreator
	creator for the PredictedBurialFnEvaluatorCreator class More...

class	RangeFilter

class	RangeFilterCreator

class	RDC_Evaluator

class	SelectRDC_Evaluator

class	RdcEvaluatorCreator
	creator for the RdcEvaluatorCreator class More...

class	RdcSelectEvaluatorCreator
	creator for the RdcSelectEvaluatorCreator class More...

class	RdcTargetEvaluatorCreator
	creator for the RdcTargetEvaluatorCreator class More...

class	RelativePoseFilter

class	RelativePoseFilterCreator

class	ReportFilter

class	ReportFilterCreator

class	ResidueBurialFilter

class	ResidueBurialFilterCreator

class	ResidueCountFilter

class	ResidueCountFilterCreator

class	ResidueDistanceFilter

class	ResidueDistanceFilterCreator

class	ResidueIEFilter

class	ResidueIEFilterCreator

class	ResidueSetChainEnergyFilter

class	ResidueSetChainEnergyFilterCreator

class	ResiduesInInterfaceFilter

class	ResiduesInInterfaceFilterCreator

class	RGFilter

class	RmsdEvaluator

class	SelectRmsdEvaluator

class	SelectGdtEvaluator

class	SelectMaxsubEvaluator

class	SymmetricRmsdEvaluator

class	LoopRmsdEvaluator

class	RmsdEvaluatorCreator
	creator for the RmsdEvaluatorCreator class More...

class	RmsdTargetEvaluatorCreator
	creator for the RmsdTargetEvaluatorCreator class More...

class	RotamerBoltzmannWeight

class	RotamerBoltzmannWeightFilterCreator

class	RPF_ScoreEvaluator

class	SAXSScoreFilter

class	ScoreCutoffFilter

class	ScoreCutoffFilterCreator

class	ScoreEvaluator
	that rewrites the whole pss struct all previous entries will be lost... probably not what one wants... More...

class	TruncatedScoreEvaluator

class	ScoreTypeFilter

class	ScoreTypeFilterCreator

class	ShapeComplementarityFilter

class	ShapeComplementarityFilterCreator

class	SheetFilter

class	SidechainRmsdFilter

class	SidechainRmsdFilterCreator

class	Sigmoid
	transform the output from a regular filter into a sigmoid ranging from 0-1 according to: fx = 1/[1 + exp[ ( x - offset ) * steepness ] The function asymptotically reaches 1 at negative values and 0 at positive values. It's 0.5 at the offset and steepness determines its slope at the offset More...

class	SigmoidFilterCreator

class	StructuralSimilarityEvaluator

class	StructureSimilarityEvaluatorCreator
	creator for the StructureSimilarityEvaluatorCreator class More...

struct	Quat

class	SymmetricMotifFilter

class	SymmetricMotifFilterCreator

class	TerminusDistanceFilter

class	TerminusDistanceFilterCreator

Typedefs
typedef utility::pointer::owning_ptr < ConservedPosMutationFilter >	ConservedPosMutationFilterOP

typedef utility::pointer::owning_ptr < ConservedPosMutationFilter const >	ConservedPosMutationFilterCOP

typedef utility::pointer::owning_ptr < ConstraintScoreCutoffFilter >	ConstraintScoreCutoffFilterOP

typedef utility::pointer::owning_ptr < ConstraintScoreCutoffFilter const >	ConstraintScoreCutoffFilterCOP

typedef utility::pointer::owning_ptr < DdgFilter >	DdgFilterOP

typedef utility::pointer::owning_ptr < DdgFilter const >	DdgFilterCOP

typedef utility::pointer::owning_ptr < DeltaFilter >	DeltaFilterOP

typedef utility::pointer::owning_ptr < DeltaFilter const >	DeltaFilterCOP

typedef utility::pointer::owning_ptr < EvaluatedTrialMover >	EvaluatedTrialMoverOP

typedef utility::pointer::owning_ptr < HolesFilter >	HolesFilterOP

typedef utility::pointer::owning_ptr < HolesFilter const >	HolesFilterCOP

typedef utility::pointer::owning_ptr < InterfaceBindingEnergyDensityFilter >	InterfaceBindingEnergyDensityFilterOP

typedef utility::pointer::owning_ptr < InterfaceBindingEnergyDensityFilter const >	InterfaceBindingEnergyDensityFilterCOP

typedef utility::pointer::owning_ptr < InterfaceSasaFilter >	InterfaceSasaFilterOP

typedef utility::pointer::owning_ptr < InterfaceSasaFilter const >	InterfaceSasaFilterCOP

typedef utility::pointer::owning_ptr < Operator >	OperatorOP

typedef utility::pointer::owning_ptr < Operator const >	OperatorCOP

typedef utility::pointer::owning_ptr < PackerNeighborGraphFilter >	PackerNeighborGraphFilterOP

typedef utility::pointer::owning_ptr < PackerNeighborGraphFilter const >	PackerNeighborGraphFilterCOP

typedef utility::pointer::owning_ptr < PackStatFilter >	PackStatFilterOP

typedef utility::pointer::owning_ptr < PackStatFilter const >	PackStatFilterCOP

typedef utility::pointer::owning_ptr < PDDFScoreFilter >	PDDFScoreFilterOP

typedef utility::pointer::owning_ptr < PDDFScoreFilter const >	PDDFScoreFilterCOP

typedef utility::pointer::owning_ptr < RangeFilter >	RangeFilterOP

typedef utility::pointer::owning_ptr < RangeFilter const >	RangeFilterCOP

typedef utility::pointer::owning_ptr < SelectRDC_Evaluator >	SelectRDC_EvaluatorOP

typedef utility::pointer::owning_ptr < SelectRDC_Evaluator const >	SelectRDC_EvaluatorCOP

typedef utility::pointer::owning_ptr < RelativePoseFilter >	RelativePoseFilterOP

typedef utility::pointer::owning_ptr < RelativePoseFilter const >	RelativePoseFilterCOP

typedef utility::pointer::owning_ptr < ResidueIEFilter >	ResidueIEFilterOP

typedef utility::pointer::owning_ptr < ResidueIEFilter const >	ResidueIEFilterCOP

typedef utility::pointer::owning_ptr < RotamerBoltzmannWeight >	RotamerBoltzmannWeightFilterOP

typedef utility::pointer::owning_ptr < RotamerBoltzmannWeight const >	RotamerBoltzmannWeightFilterCOP

typedef utility::pointer::owning_ptr < SAXSScoreFilter >	SAXSScoreFilterOP

typedef utility::pointer::owning_ptr < SAXSScoreFilter const >	SAXSScoreFilterCOP

typedef utility::pointer::owning_ptr < ScoreCutoffFilter >	ScoreCutoffFilterOP

typedef utility::pointer::owning_ptr < ScoreCutoffFilter const >	ScoreCutoffFilterCOP

typedef utility::pointer::owning_ptr < ShapeComplementarityFilter >	ShapeComplementarityFilterOP

typedef utility::pointer::owning_ptr < ShapeComplementarityFilter const >	ShapeComplementarityFilterCOP

typedef utility::pointer::owning_ptr < Sigmoid >	SigmoidOP

typedef utility::pointer::owning_ptr < Sigmoid const >	SigmoidCOP

typedef utility::pointer::owning_ptr < StructuralSimilarityEvaluator >	StructuralSimilarityEvaluatorOP

typedef utility::pointer::owning_ptr < StructuralSimilarityEvaluator const >	StructuralSimilarityEvaluatorCOP

Enumerations
enum	Operation { SUM, PRODUCT, NORMALIZED_SUM, MAX, MIN, SUBTRACT, ABS, BOOLEAN_OR }

Functions
static basic::Tracer	TR ("protocols.simple_filters.AlaScan")

static basic::Tracer	TR ("protocols.filters.AtomicContactFilter")

static basic::Tracer	TR ("protocols.filters.AtomicDistanceFilter")

static basic::Tracer	buried_unsat_hbond_filter_tracer ("protocols.simple_filters.BuriedUnsatHbondFilter")

boost::dynamic_bitset	get_contact_features (core::pose::Pose const &pose, core::Real const dist_threshold, std::string const &atom_name, core::Size const min_seqsep=12, core::Size const skip_res=0)

core::Real	pct_features_in_common (boost::dynamic_bitset<> const &set1, boost::dynamic_bitset<> const &set2)

static basic::Tracer	TR ("protocols.simple_filters.DdgFilter")

static basic::Tracer	TR ("protocols.simple_filters.DeltaFilter")

static basic::Tracer	energy_per_residue_filter_tracer ("protocols.simple_filters.EnergyPerResidueFilter")

static basic::Tracer	TR ("protocols.simple_filters.ExpiryFilter")

static basic::Tracer	TR ("protocols.simple_filters.FileExistFilter")

static basic::Tracer	TR ("protocols.simple_filters.FileRemoveFilter")

static basic::Tracer	TR ("protocols.simple_filters.InterfaceBindingEnergyDensityFilter")

static basic::Tracer	TR ("protocols.simple_filters.InterfaceSasaFilter")

static basic::Tracer	neighbor_type_filter_tracer ("protocols.simple_filters.NeighborTypeFilter")

static basic::Tracer	TR ("protocols.simple_filters.NMerPSSMEnergyFilter")

static basic::Tracer	TR ("protocols.simple_filters.NonSequentialNeighborsFilter")

static basic::Tracer	TR ("protocols.simple_filters.Operator")

static basic::Tracer	TR ("protocols.filters.PoseInfoFilter")

static basic::Tracer	TR ("protocols.simple_filters.RelativePoseFilter")

static basic::Tracer	TR ("protocols.simple_filters.ReportFilter")

static basic::Tracer	residue_burial_filter_tracer ("protocols.simple_filters.ResidueBurialFilter")

static basic::Tracer	TR ("protocols.simple_filters.ResidueCountFilter")

static basic::Tracer	residue_distance_filter_tracer ("protocols.simple_filters.ResidueDistanceFilter")

static basic::Tracer	tr ("protocols.simple_filters.ResidueIEFilter")

static basic::Tracer	TR ("protocols.simple_filters.ResidueSetChainEnergyFilter")

static basic::Tracer	residues_in_interface_tracer ("protocols.simple_filters.ResiduesInInterfaceFilter")

static basic::Tracer	TR ("protocols.simple_filters.RotamerBoltzmannWeight")

static basic::Tracer	score_type_filter_tracer ("protocols.simple_filters.ScoreTypeFilter")

static basic::Tracer	sidechain_rmsd_filter_tracer ("protocols.simple_filters.SidechainRmsdFilter")

static basic::Tracer	TR ("protocols.simple_filters.Sigmoid")

static basic::Tracer	TR ("protocols.simple_filters.SymmetricMotifFilter")

void	R2quat (numeric::xyzMatrix< core::Real > R, Quat &Q)

void	quat2R (Quat &Q, numeric::xyzMatrix< core::Real > R)

core::Real	RMSwrapper (utility::vector1< numeric::xyzVector< core::Real > > chainA, utility::vector1< numeric::xyzVector< core::Real > > chainB, numeric::xyzMatrix< core::Real > &R, numeric::xyzVector< core::Real > &preT, numeric::xyzVector< core::Real > &postT)

static basic::Tracer	TR ("protocols.simple_filters.TerminusDistanceFilter")

Variables
static core::scoring::methods::ResidualDipolarCouplingEnergy	energy_evaluator

Typedef Documentation

typedef utility::pointer::owning_ptr< ConservedPosMutationFilter const > protocols::simple_filters::ConservedPosMutationFilterCOP

Definition at line 32 of file ConservedPosMutationFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ConservedPosMutationFilter > protocols::simple_filters::ConservedPosMutationFilterOP

Definition at line 28 of file ConservedPosMutationFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ConstraintScoreCutoffFilter const > protocols::simple_filters::ConstraintScoreCutoffFilterCOP

Definition at line 32 of file ConstraintScoreCutoffFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ConstraintScoreCutoffFilter > protocols::simple_filters::ConstraintScoreCutoffFilterOP

Definition at line 28 of file ConstraintScoreCutoffFilter.fwd.hh.

typedef utility::pointer::owning_ptr< DdgFilter const > protocols::simple_filters::DdgFilterCOP

Definition at line 25 of file DdgFilter.fwd.hh.

typedef utility::pointer::owning_ptr< DdgFilter > protocols::simple_filters::DdgFilterOP

Definition at line 22 of file DdgFilter.fwd.hh.

typedef utility::pointer::owning_ptr< DeltaFilter const > protocols::simple_filters::DeltaFilterCOP

Definition at line 30 of file DeltaFilter.fwd.hh.

typedef utility::pointer::owning_ptr< DeltaFilter > protocols::simple_filters::DeltaFilterOP

Definition at line 26 of file DeltaFilter.fwd.hh.

typedef utility::pointer::owning_ptr< EvaluatedTrialMover > protocols::simple_filters::EvaluatedTrialMoverOP

Definition at line 55 of file EvaluatedTrialMover.hh.

typedef utility::pointer::owning_ptr< HolesFilter const > protocols::simple_filters::HolesFilterCOP

Definition at line 30 of file HolesFilter.fwd.hh.

typedef utility::pointer::owning_ptr< HolesFilter > protocols::simple_filters::HolesFilterOP

Definition at line 26 of file HolesFilter.fwd.hh.

typedef utility::pointer::owning_ptr< InterfaceBindingEnergyDensityFilter const > protocols::simple_filters::InterfaceBindingEnergyDensityFilterCOP

Definition at line 25 of file InterfaceBindingEnergyDensityFilter.fwd.hh.

typedef utility::pointer::owning_ptr< InterfaceBindingEnergyDensityFilter > protocols::simple_filters::InterfaceBindingEnergyDensityFilterOP

Definition at line 22 of file InterfaceBindingEnergyDensityFilter.fwd.hh.

typedef utility::pointer::owning_ptr< InterfaceSasaFilter const > protocols::simple_filters::InterfaceSasaFilterCOP

Definition at line 25 of file InterfaceSasaFilter.fwd.hh.

typedef utility::pointer::owning_ptr< InterfaceSasaFilter > protocols::simple_filters::InterfaceSasaFilterOP

Definition at line 22 of file InterfaceSasaFilter.fwd.hh.

typedef utility::pointer::owning_ptr< Operator const > protocols::simple_filters::OperatorCOP

Definition at line 24 of file OperatorFilter.fwd.hh.

typedef utility::pointer::owning_ptr< Operator > protocols::simple_filters::OperatorOP

Definition at line 21 of file OperatorFilter.fwd.hh.

typedef utility::pointer::owning_ptr< PackerNeighborGraphFilter const > protocols::simple_filters::PackerNeighborGraphFilterCOP

Definition at line 168 of file PackerNeighborGraphFilter.hh.

typedef utility::pointer::owning_ptr< PackerNeighborGraphFilter > protocols::simple_filters::PackerNeighborGraphFilterOP

Definition at line 167 of file PackerNeighborGraphFilter.hh.

typedef utility::pointer::owning_ptr< PackStatFilter const > protocols::simple_filters::PackStatFilterCOP

Definition at line 30 of file PackStatFilter.fwd.hh.

typedef utility::pointer::owning_ptr< PackStatFilter > protocols::simple_filters::PackStatFilterOP

Definition at line 26 of file PackStatFilter.fwd.hh.

typedef utility::pointer::owning_ptr< PDDFScoreFilter const > protocols::simple_filters::PDDFScoreFilterCOP

Definition at line 29 of file PDDFScoreFilter.fwd.hh.

typedef utility::pointer::owning_ptr< PDDFScoreFilter > protocols::simple_filters::PDDFScoreFilterOP

Definition at line 25 of file PDDFScoreFilter.fwd.hh.

typedef utility::pointer::owning_ptr< RangeFilter const > protocols::simple_filters::RangeFilterCOP

Definition at line 30 of file RangeFilter.fwd.hh.

typedef utility::pointer::owning_ptr< RangeFilter > protocols::simple_filters::RangeFilterOP

Definition at line 26 of file RangeFilter.fwd.hh.

typedef utility::pointer::owning_ptr< RelativePoseFilter const > protocols::simple_filters::RelativePoseFilterCOP

Definition at line 30 of file RelativePoseFilter.fwd.hh.

typedef utility::pointer::owning_ptr< RelativePoseFilter > protocols::simple_filters::RelativePoseFilterOP

Definition at line 26 of file RelativePoseFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ResidueIEFilter const > protocols::simple_filters::ResidueIEFilterCOP

Definition at line 28 of file ResidueIEFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ResidueIEFilter > protocols::simple_filters::ResidueIEFilterOP

Definition at line 24 of file ResidueIEFilter.fwd.hh.

typedef utility::pointer::owning_ptr< RotamerBoltzmannWeight const > protocols::simple_filters::RotamerBoltzmannWeightFilterCOP

Definition at line 30 of file RotamerBoltzmannWeight.fwd.hh.

typedef utility::pointer::owning_ptr< RotamerBoltzmannWeight > protocols::simple_filters::RotamerBoltzmannWeightFilterOP

Definition at line 26 of file RotamerBoltzmannWeight.fwd.hh.

typedef utility::pointer::owning_ptr< SAXSScoreFilter const > protocols::simple_filters::SAXSScoreFilterCOP

Definition at line 29 of file SAXSScoreFilter.fwd.hh.

typedef utility::pointer::owning_ptr< SAXSScoreFilter > protocols::simple_filters::SAXSScoreFilterOP

Definition at line 25 of file SAXSScoreFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ScoreCutoffFilter const > protocols::simple_filters::ScoreCutoffFilterCOP

Definition at line 32 of file ScoreCutoffFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ScoreCutoffFilter > protocols::simple_filters::ScoreCutoffFilterOP

Definition at line 28 of file ScoreCutoffFilter.fwd.hh.

typedef utility::pointer::owning_ptr< SelectRDC_Evaluator const > protocols::simple_filters::SelectRDC_EvaluatorCOP

Definition at line 31 of file RDC_Evaluator.fwd.hh.

typedef utility::pointer::owning_ptr< SelectRDC_Evaluator > protocols::simple_filters::SelectRDC_EvaluatorOP

Definition at line 28 of file RDC_Evaluator.fwd.hh.

typedef utility::pointer::owning_ptr< ShapeComplementarityFilter const > protocols::simple_filters::ShapeComplementarityFilterCOP

Definition at line 30 of file ShapeComplementarityFilter.fwd.hh.

typedef utility::pointer::owning_ptr< ShapeComplementarityFilter > protocols::simple_filters::ShapeComplementarityFilterOP

Definition at line 26 of file ShapeComplementarityFilter.fwd.hh.

typedef utility::pointer::owning_ptr< Sigmoid const > protocols::simple_filters::SigmoidCOP

Definition at line 24 of file SigmoidFilter.fwd.hh.

typedef utility::pointer::owning_ptr< Sigmoid > protocols::simple_filters::SigmoidOP

Definition at line 21 of file SigmoidFilter.fwd.hh.

typedef utility::pointer::owning_ptr< StructuralSimilarityEvaluator const > protocols::simple_filters::StructuralSimilarityEvaluatorCOP

Definition at line 24 of file StructuralSimilarityEvaluator.fwd.hh.

typedef utility::pointer::owning_ptr< StructuralSimilarityEvaluator > protocols::simple_filters::StructuralSimilarityEvaluatorOP

Definition at line 22 of file StructuralSimilarityEvaluator.fwd.hh.

Enumeration Type Documentation

enum protocols::simple_filters::Operation

Enumerator
SUM
PRODUCT
NORMALIZED_SUM
MAX
MIN
SUBTRACT
ABS
BOOLEAN_OR

Definition at line 28 of file OperatorFilter.hh.

Function Documentation

static basic::Tracer protocols::simple_filters::buried_unsat_hbond_filter_tracer ( "protocols.simple_filters.BuriedUnsatHbondFilter" )

static

static basic::Tracer protocols::simple_filters::energy_per_residue_filter_tracer ( "protocols.simple_filters.EnergyPerResidueFilter" )

static

Referenced by protocols::simple_filters::EnergyPerResidueFilter::apply(), and protocols::simple_filters::EnergyPerResidueFilter::compute().

boost::dynamic_bitset protocols::simple_filters::get_contact_features	(	core::pose::Pose const &	pose,
		core::Real const	dist_threshold,
		std::string const &	atom_name,
		core::Size const	min_seqsep = `12`,
		core::Size const	skip_res = `0`
	)

Definition at line 34 of file ContactMapEvaluator.cc.

References protocols::forge::build::SegmentInsertConnectionScheme::N, core::pose::Pose::residue(), core::pose::Pose::total_residue(), and core::conformation::Residue::xyz().

Referenced by protocols::simple_filters::ContactMapEvaluator::apply().

static basic::Tracer protocols::simple_filters::neighbor_type_filter_tracer ( "protocols.simple_filters.NeighborTypeFilter" )

static

Referenced by protocols::simple_filters::NeighborTypeFilter::apply().

core::Real protocols::simple_filters::pct_features_in_common	(	boost::dynamic_bitset<> const &	set1,
		boost::dynamic_bitset<> const &	set2
	)

Definition at line 70 of file ContactMapEvaluator.cc.

Referenced by protocols::simple_filters::ContactMapEvaluator::apply().

void protocols::simple_filters::quat2R	(	Quat &	Q,
		numeric::xyzMatrix< core::Real >	R
	)

Definition at line 90 of file SymmetricMotifFilter.cc.

References protocols::simple_filters::Quat::w, protocols::simple_filters::Quat::x, protocols::simple_filters::Quat::y, and protocols::simple_filters::Quat::z.

Referenced by protocols::simple_filters::SymmetricMotifFilter::process_motifs().

void protocols::simple_filters::R2quat	(	numeric::xyzMatrix< core::Real >	R,
		Quat &	Q
	)

Definition at line 67 of file SymmetricMotifFilter.cc.

References protocols::simple_filters::Quat::w, protocols::simple_filters::Quat::x, protocols::simple_filters::Quat::y, and protocols::simple_filters::Quat::z.

Referenced by protocols::simple_filters::SymmetricMotifFilter::process_motifs().

static basic::Tracer protocols::simple_filters::residue_burial_filter_tracer ( "protocols.simple_filters.ResidueBurialFilter" )

static

static basic::Tracer protocols::simple_filters::residue_distance_filter_tracer ( "protocols.simple_filters.ResidueDistanceFilter" )

static

Referenced by protocols::simple_filters::ResidueDistanceFilter::apply().

static basic::Tracer protocols::simple_filters::residues_in_interface_tracer ( "protocols.simple_filters.ResiduesInInterfaceFilter" )

static

core::Real protocols::simple_filters::RMSwrapper	(	utility::vector1< numeric::xyzVector< core::Real > >	chainA,
		utility::vector1< numeric::xyzVector< core::Real > >	chainB,
		numeric::xyzMatrix< core::Real > &	R,
		numeric::xyzVector< core::Real > &	preT,
		numeric::xyzVector< core::Real > &	postT
	)

Definition at line 101 of file SymmetricMotifFilter.cc.

References core::scoring::rms.

Referenced by protocols::simple_filters::SymmetricMotifFilter::compute_d2(), and protocols::simple_filters::SymmetricMotifFilter::process_motifs().

static basic::Tracer protocols::simple_filters::score_type_filter_tracer ( "protocols.simple_filters.ScoreTypeFilter" )

static

Referenced by protocols::simple_filters::ScoreTypeFilter::apply(), and protocols::simple_filters::ScoreTypeFilter::parse_def().

static basic::Tracer protocols::simple_filters::sidechain_rmsd_filter_tracer ( "protocols.simple_filters.SidechainRmsdFilter" )

static

Referenced by protocols::simple_filters::SidechainRmsdFilter::apply().

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.NonSequentialNeighborsFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.ExpiryFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.FileExistFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.DeltaFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.Sigmoid" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.Operator" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.filters.PoseInfoFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.ReportFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.ResidueCountFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.FileRemoveFilter" )

static

static basic::Tracer protocols::simple_filters::tr ( "protocols.simple_filters.ResidueIEFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.filters.AtomicDistanceFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.filters.AtomicContactFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.DdgFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.InterfaceSasaFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.InterfaceBindingEnergyDensityFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.ResidueSetChainEnergyFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.NMerPSSMEnergyFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.RelativePoseFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.SymmetricMotifFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.AlaScan" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.TerminusDistanceFilter" )

static

static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.RotamerBoltzmannWeight" )

static

Variable Documentation

core::scoring::methods::ResidualDipolarCouplingEnergy protocols::simple_filters::energy_evaluator

static

Definition at line 63 of file RDC_Evaluator.cc.

Referenced by protocols::simple_filters::RDC_Evaluator::apply(), and protocols::simple_filters::SelectRDC_Evaluator::apply().

Classes

Typedefs

Enumerations

Functions

Variables

Typedef Documentation

Enumeration Type Documentation

Function Documentation

Variable Documentation