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protocols::swa::rna::StepWiseRNA_RotamerGenerator Member List

This is the complete list of members for protocols::swa::rna::StepWiseRNA_RotamerGenerator, including all inherited members.

add_torsion_id(core::id::TorsionID const torsion_id)protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
allow_syn_pyrimidine_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
beta_bins_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
bin_size_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
bins1_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
bins2_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
bins3_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
eps_bins_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
exclude_alpha_beta_gamma_sampling_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
extra_anti_chi_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
extra_beta_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
extra_epsilon_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
extra_rotamer_perturbations_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
extra_syn_chi_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
fast_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
force_syn_chi_res_list_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
get_current_rotamer()protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
group_rotamer()protocols::swa::rna::StepWiseRNA_RotamerGenerator
group_rotamer_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
has_another_rotamer() const protocols::swa::rna::StepWiseRNA_RotamerGenerator
include_syn_chi_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
initialize_extra_rotamer_perturbations()protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
initialize_rotamer_generator(core::pose::Pose const &pose)protocols::swa::rna::StepWiseRNA_RotamerGenerator
initialize_rotamers()protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
initialize_sample_base_states(core::pose::Pose const &pose)protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
lower_base_state_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
moving_suite()protocols::swa::rna::StepWiseRNA_RotamerGenerator
moving_suite_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
num_rotamer_centers()protocols::swa::rna::StepWiseRNA_RotamerGenerator
perturb_torsion_ids_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
pucker1_specified_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
pucker2_specified_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
pucker_state(std::string const which_sugar)protocols::swa::rna::StepWiseRNA_RotamerGenerator
reset()protocols::swa::rna::StepWiseRNA_RotamerGenerator
rotamer_centers_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
rotamer_list_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
sample_chi_torsion_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
sample_extra_rotamers_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
sample_lower_sugar_and_base_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
sample_upper_sugar_and_base_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
set_allow_syn_pyrimidine(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_bin_size(core::Size const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_exclude_alpha_beta_gamma_sampling(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_extra_anti_chi(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_extra_beta(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_extra_epsilon(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_extra_syn_chi(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_fast(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_force_syn_chi_res_list(utility::vector1< core::Size > const &setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_include_syn_chi(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_sample_chi_torsion(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
set_sample_extra_rotamers(bool const setting)protocols::swa::rna::StepWiseRNA_RotamerGeneratorinline
StepWiseRNA_RotamerGenerator(Size const moving_suite, bool const sample_lower_sugar_and_base, bool const sample_upper_sugar_and_base, PuckerState const pucker1, PuckerState const pucker2)protocols::swa::rna::StepWiseRNA_RotamerGenerator
subgroup_rotamer()protocols::swa::rna::StepWiseRNA_RotamerGenerator
subgroup_rotamer_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
torsion_ids() const protocols::swa::rna::StepWiseRNA_RotamerGenerator
torsion_ids_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
update_to_next_rotamer()protocols::swa::rna::StepWiseRNA_RotamerGenerator
upper_base_state_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
verbose_protocols::swa::rna::StepWiseRNA_RotamerGeneratorprivate
~StepWiseRNA_RotamerGenerator()protocols::swa::rna::StepWiseRNA_RotamerGeneratorvirtual