Inheritance diagram for protocols::abinitio::FixTemplateJumpSetup:

Collaboration diagram for protocols::abinitio::FixTemplateJumpSetup:

Public Member Functions
	FixTemplateJumpSetup (TemplatesCOP templates, core::fragment::SecondaryStructureCOP secstruct, PairingStatisticsCOP, core::scoring::dssp::PairingList const &, jumping::BaseJumpSetupOP jump_def)

	~FixTemplateJumpSetup ()

	FixTemplateJumpSetup (TemplateJumpSetup const &templ, jumping::BaseJumpSetupOP jump_def)

virtual jumping::JumpSample	create_jump_sample () const

Public Member Functions inherited from protocols::abinitio::TemplateJumpSetup
	TemplateJumpSetup (TemplatesCOP templates, core::fragment::SecondaryStructureCOP secstruct, PairingStatisticsCOP, core::scoring::dssp::PairingList const &helix_pairings)

	~TemplateJumpSetup ()

std::string	type_name () const

jumping::JumpSample	clean_jumps (jumping::JumpSample const &) const
	take from a given JumpSample only those Jumps, which could also have been created by create_jump_sample() More...

virtual core::fragment::FragSetOP	generate_jump_frags (jumping::JumpSample const &, core::kinematics::MoveMap const &) const
	returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample More...

bool	is_helix_jump (core::scoring::dssp::Pairing const &p) const

Public Member Functions inherited from protocols::jumping::BaseJumpSetup
virtual	~BaseJumpSetup ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Detailed Description

Definition at line 89 of file TemplateJumpSetup.hh.

Constructor & Destructor Documentation

protocols::abinitio::FixTemplateJumpSetup::FixTemplateJumpSetup	(	TemplatesCOP	templates,
		core::fragment::SecondaryStructureCOP	secstruct,
		PairingStatisticsCOP	strand_stats,
		core::scoring::dssp::PairingList const &	helix_pairings,
		jumping::BaseJumpSetupOP	jump_def
	)

Definition at line 302 of file TemplateJumpSetup.cc.

protocols::abinitio::FixTemplateJumpSetup::~FixTemplateJumpSetup ( )

Definition at line 61 of file TemplateJumpSetup.cc.

protocols::abinitio::FixTemplateJumpSetup::FixTemplateJumpSetup	(	TemplateJumpSetup const &	templ,
		jumping::BaseJumpSetupOP	jump_def
	)

Definition at line 312 of file TemplateJumpSetup.cc.

JumpSample protocols::abinitio::FixTemplateJumpSetup::create_jump_sample ( ) const

virtual

Definition at line 320 of file TemplateJumpSetup.cc.

References jump_def_.

jumping::BaseJumpSetupOP protocols::abinitio::FixTemplateJumpSetup::jump_def_

private

Definition at line 101 of file TemplateJumpSetup.hh.

The documentation for this class was generated from the following files: