protocols::toolbox::KCluster Class Reference

basic class for performing a K-style Clustering algorithm More...

#include <KCluster.hh>

Inheritance diagram for protocols::toolbox::KCluster:

Collaboration diagram for protocols::toolbox::KCluster:

Public Types
typedef ObjexxFCL::FArray2_double	FA2d
typedef ObjexxFCL::FArray2P_double	FA2Pd
typedef ObjexxFCL::FArray2D_double	FA2Dd

Public Member Functions
	KCluster ()
virtual	~KCluster ()
virtual void	init (KClusterElementOP, Size first=0)=0
virtual void	update (KClusterElementOP, KClusterData &)=0
virtual bool	whoami ()=0
virtual Real	get_threshold ()=0
virtual void	set_threshold (Real)=0
virtual Real	assign (KClusterElementOP, KClusterData &)=0
void	cluster (KClusterElementOP, KClusterData &, Size first=0)
void	set_ncluster (Size nc)

Protected Attributes
Size	n_cluster_

Detailed Description

basic class for performing a K-style Clustering algorithm

Definition at line 269 of file KCluster.hh.

Member Typedef Documentation

typedef ObjexxFCL::FArray2_double protocols::toolbox::KCluster::FA2d

Definition at line 272 of file KCluster.hh.

typedef ObjexxFCL::FArray2D_double protocols::toolbox::KCluster::FA2Dd

Definition at line 274 of file KCluster.hh.

typedef ObjexxFCL::FArray2P_double protocols::toolbox::KCluster::FA2Pd

Definition at line 273 of file KCluster.hh.

Constructor & Destructor Documentation

protocols::toolbox::KCluster::KCluster

(

)

Definition at line 503 of file KCluster.cc.

protocols::toolbox::KCluster::~KCluster ( )

virtual

Definition at line 511 of file KCluster.cc.

Member Function Documentation

virtual Real protocols::toolbox::KCluster::assign ( KClusterElementOP  , KClusterData &    )

pure virtual

Implemented in protocols::toolbox::GreedyKCenter, and protocols::toolbox::KMedoid.

void protocols::toolbox::KCluster::cluster	(	KClusterElementOP	c,
		KClusterData &	d,
		Size	first = 0
	)

Definition at line 513 of file KCluster.cc.

References core::init(), and protocols::TR().

virtual Real protocols::toolbox::KCluster::get_threshold ( )

pure virtual

Implemented in protocols::toolbox::GreedyKCenter, and protocols::toolbox::KMedoid.

virtual void protocols::toolbox::KCluster::init ( KClusterElementOP  , Size  first = 0  )

pure virtual

Implemented in protocols::toolbox::GreedyKCenter, and protocols::toolbox::KMedoid.

void protocols::toolbox::KCluster::set_ncluster ( Size  nc)

inline

Definition at line 288 of file KCluster.hh.

virtual void protocols::toolbox::KCluster::set_threshold ( Real  )

pure virtual

Implemented in protocols::toolbox::GreedyKCenter, and protocols::toolbox::KMedoid.

virtual void protocols::toolbox::KCluster::update ( KClusterElementOP  , KClusterData &    )

pure virtual

Implemented in protocols::toolbox::GreedyKCenter, and protocols::toolbox::KMedoid.

virtual bool protocols::toolbox::KCluster::whoami ( )

pure virtual

Implemented in protocols::toolbox::GreedyKCenter, and protocols::toolbox::KMedoid.

Member Data Documentation

Size protocols::toolbox::KCluster::n_cluster_

protected

Definition at line 291 of file KCluster.hh.

Referenced by protocols::toolbox::KMedoid::init(), and protocols::toolbox::GreedyKCenter::update().

---

The documentation for this class was generated from the following files:

• src/protocols/toolbox/KCluster.hh
• src/protocols/toolbox/KCluster.cc