| absolute_ccd_tolerance_ | protocols::rna::RNA_LoopCloser | private |
| apply(core::pose::Pose &pose) | protocols::rna::RNA_LoopCloser | virtual |
| apply(core::pose::Pose &pose, std::map< Size, Size > const &connections) | protocols::rna::RNA_LoopCloser | |
| apply(core::pose::Pose &pose, std::map< Size, Size > const &connections, Size const &cutpoint) | protocols::rna::RNA_LoopCloser | |
| apply(core::pose::Pose &pose, Size const &cutpoint) | protocols::rna::RNA_LoopCloser | |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| attempt_closure_cutoff_ | protocols::rna::RNA_LoopCloser | private |
| ccd_tolerance_ | protocols::rna::RNA_LoopCloser | private |
| check_closure(core::pose::Pose &pose, core::Real ccd_tolerance=0.0) | protocols::rna::RNA_LoopCloser | |
| check_tolerance_ | protocols::rna::RNA_LoopCloser | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::rna::RNA_LoopCloser | inlinevirtual |
| close_loops_carefully(core::pose::Pose &pose, std::map< Size, Size > const &connections) | protocols::rna::RNA_LoopCloser | |
| create() | protocols::moves::Mover | virtual |
| fast_scan(bool const &setting) | protocols::rna::RNA_LoopCloser | inline |
| fast_scan_ | protocols::rna::RNA_LoopCloser | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| gap_distance_cutoff_ | protocols::rna::RNA_LoopCloser | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_chainbreak_xyz(core::pose::Pose &pose, Size const cutpoint, utility::vector1< core::Vector > &upstream_xyzs, utility::vector1< core::Vector > &downstream_xyzs) const | protocols::rna::RNA_LoopCloser | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_dist_err(core::pose::Pose &pose, Size const cutpoint) const | protocols::rna::RNA_LoopCloser | private |
| get_extra_cutpoints(core::pose::Pose const &pose) const | protocols::rna::RNA_LoopCloser | private |
| get_gap_distance(core::pose::Pose &pose, Size const cutpoint) const | protocols::rna::RNA_LoopCloser | private |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::rna::RNA_LoopCloser | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| local_minimize_at_chainbreaks(core::pose::Pose &pose, core::scoring::ScoreFunctionOP &scorefxn) const | protocols::rna::RNA_LoopCloser | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| NUM_ROUNDS_ | protocols::rna::RNA_LoopCloser | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| passes_fast_scan(core::pose::Pose &pose, Size const i) const | protocols::rna::RNA_LoopCloser | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remove_variants_at_extra_cutpoints(core::pose::Pose &pose, utility::vector1< Size > const &extra_cutpoints) const | protocols::rna::RNA_LoopCloser | private |
| reset_status() | protocols::moves::Mover | |
| rna_ccd_close(core::pose::Pose &pose, std::map< Size, Size > const &connections, Size const &cutpoint) const | protocols::rna::RNA_LoopCloser | private |
| RNA_LoopCloser() | protocols::rna::RNA_LoopCloser | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| setup_variants_at_extra_cutpoints(core::pose::Pose &pose, utility::vector1< Size > const &extra_cutpoints) const | protocols::rna::RNA_LoopCloser | private |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tight_minimize(core::pose::Pose &pose) const | protocols::rna::RNA_LoopCloser | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| verbose_ | protocols::rna::RNA_LoopCloser | private |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.4