AlignmentSet.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
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// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
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/// @file protocols/comparative_modeling/AlignmentSet.hh
/// @brief
/// @author James Thompson

#ifndef INCLUDED_protocols_comparative_modeling_AlignmentSet_HH
#define INCLUDED_protocols_comparative_modeling_AlignmentSet_HH

#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>

#include <set>

#include <utility/vector1.hh>



namespace protocols {
namespace comparative_modeling {

class AlignmentSet {

public:
  AlignmentSet () {}
  virtual ~AlignmentSet() {}

  /// @brief Gets the next alignment from the stream. Might be the same
  /// alignment every time, or might be a different alignment after each
  /// call to this function.
  utility::vector1< core::sequence::SequenceAlignment >
  alignments() const;

  void insert( core::sequence::SequenceAlignment aln );

  core::Size size() const;

private:
  std::set< core::sequence::SequenceAlignment > align_set_;

}; // AlignmentSet

} // comparative_modeling
} // protocols

#endif