ThreadSequenceOperation.hh

Go to the documentation of this file.

// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file   protocols/toolbox/task_operations/ThreadSequenceOperation.hh
/// @brief  TaskOperation class that restricts a chain to repacking
/// @author Sarel Fleishman sarelf@uw.edu

#ifndef INCLUDED_protocols_toolbox_task_operations_ThreadSequenceOperation_hh
#define INCLUDED_protocols_toolbox_task_operations_ThreadSequenceOperation_hh

// Unit Headers
#include <protocols/toolbox/task_operations/ThreadSequenceOperation.fwd.hh>
#include <protocols/toolbox/task_operations/RestrictOperationsBase.hh>

// Project Headers
#include <core/pose/Pose.fwd.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <utility/tag/Tag.fwd.hh>

// Utility Headers
#include <core/types.hh>

// C++ Headers
#include <string>
// AUTO-REMOVED #include <set>

#include <utility/vector1.hh>


namespace protocols {
namespace toolbox {
namespace task_operations {

///@details this class is a TaskOperation to prevent repacking of residues not near an interface.
class ThreadSequenceOperation : public RestrictOperationsBase
{
public:
  typedef RestrictOperationsBase parent;

  ThreadSequenceOperation();
  ThreadSequenceOperation( std::string const seq );

  virtual ~ThreadSequenceOperation();

  virtual TaskOperationOP clone() const;

  virtual void target_sequence( std::string const seq );
  virtual std::string target_sequence() const;

  virtual
  void
  apply( core::pose::Pose const &, core::pack::task::PackerTask & ) const;

  virtual void parse_tag( TagPtr );

  core::Size start_res() const;
  void start_res( core::Size const s );
  bool allow_design_around() const{ return allow_design_around_;}
  void allow_design_around( bool const b ){ allow_design_around_ = b ; }
private:
  std::string target_sequence_;
  core::Size start_res_; // dflt 1; which residue number to start threading (useful for partial threads)
  bool allow_design_around_; //dflt true; if false restricts rest of the pose to repakcing
};

} //namespace protocols
} //namespace toolbox
} //namespace task_operations

#endif // INCLUDED_protocols_toolbox_TaskOperations_ThreadSequenceOperation_HH