| atom(Size const ) const | protocols::constraints_additional::SequenceCouplingConstraint | inlinevirtual |
| AtomID typedef | core::scoring::constraints::Constraint | |
| choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &) | core::scoring::constraints::Constraint | inlinevirtual |
| clone() const | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
| core::scoring::constraints::Constraint::clone(FuncOP) const | core::scoring::constraints::Constraint | inlinevirtual |
| Conformation typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| Constraint(ScoreType const &t) | core::scoring::constraints::Constraint | inline |
| ConstraintOP typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| dist(core::pose::Pose const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| dist(XYZ_Func const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| EnergyMap typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| fill_f1_f2(AtomID const &, XYZ_Func const &, core::Vector &, core::Vector &, EnergyMap const &) const | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
| FuncFactory typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| get_func() const | core::scoring::constraints::Constraint | inlinevirtual |
| natoms() const | protocols::constraints_additional::SequenceCouplingConstraint | inlinevirtual |
| operator!=(Constraint const &other) const | core::scoring::constraints::Constraint | inline |
| operator==(Constraint const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| Pose typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| read_constraint(std::istream &, core::pose::Pose const &) | core::scoring::constraints::Constraint | inlinevirtual |
| read_data(std::istream &) | core::scoring::constraints::Constraint | inlinevirtual |
| read_def(std::istream &, Pose const &, FuncFactory const &) | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
| remap_resid(core::id::SequenceMapping const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| remapped_clone(pose::Pose const &, pose::Pose const &, id::SequenceMappingCOP map=NULL) const | core::scoring::constraints::Constraint | inlinevirtual |
| residues() const | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
| score(XYZ_Func const &, EnergyMap const &, EnergyMap &) const | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
| core::scoring::constraints::Constraint::score(conformation::Conformation const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| score_type() const | core::scoring::constraints::Constraint | inline |
| seqpos1() const | protocols::constraints_additional::SequenceCouplingConstraint | inline |
| seqpos1_ | protocols::constraints_additional::SequenceCouplingConstraint | private |
| seqpos2() const | protocols::constraints_additional::SequenceCouplingConstraint | inline |
| seqpos2_ | protocols::constraints_additional::SequenceCouplingConstraint | private |
| sequence_coupling() | protocols::constraints_additional::SequenceCouplingConstraint | |
| sequence_coupling() const | protocols::constraints_additional::SequenceCouplingConstraint | |
| sequence_coupling_ | protocols::constraints_additional::SequenceCouplingConstraint | private |
| SequenceCoupling typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| SequenceCouplingConstraint() | protocols::constraints_additional::SequenceCouplingConstraint | |
| SequenceCouplingConstraint(Pose const &, core::Size, core::Size, SequenceCouplingOP profile=NULL) | protocols::constraints_additional::SequenceCouplingConstraint | |
| SequenceCouplingConstraint(core::Size, core::Size, SequenceCouplingOP profile=NULL) | protocols::constraints_additional::SequenceCouplingConstraint | |
| SequenceCouplingCOP typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| SequenceCouplingOP typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| SequenceMapping typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| set_sequence_coupling(SequenceCouplingOP) | protocols::constraints_additional::SequenceCouplingConstraint | |
| setup_for_derivatives(XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| setup_for_scoring(XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| show(std::ostream &out) const | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
| show_def(std::ostream &, Pose const &) const | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
| show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const | core::scoring::constraints::Constraint | virtual |
| steal_def(pose::Pose const &) | core::scoring::constraints::Constraint | inlinevirtual |
| to_string() const | core::scoring::constraints::Constraint | inline |
| type() const | protocols::constraints_additional::SequenceCouplingConstraint | inlinevirtual |
| XYZ_Func typedef | protocols::constraints_additional::SequenceCouplingConstraint | |
| ~Constraint() | core::scoring::constraints::Constraint | virtual |
| ~SequenceCouplingConstraint() | protocols::constraints_additional::SequenceCouplingConstraint | virtual |
1.8.4