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TrieCountPairGeneric.hh
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9 
10 /// @file core/scoring/etable/etrie/TrieCountPairGeneric.hh
11 /// @brief
12 /// @author Andrew Leaver-Fay (aleaverfay@gmail.com)
13 
14 #ifndef INCLUDED_core_scoring_etable_etrie_TrieCountPairGeneric_hh
15 #define INCLUDED_core_scoring_etable_etrie_TrieCountPairGeneric_hh
16 
17 // Unit Headers
18 #include <core/scoring/etable/etrie/TrieCountPairGeneric.fwd.hh>
19 
20 // Package Headers
21 #include <core/scoring/etable/etrie/CountPairData_1_1.fwd.hh>
22 #include <core/scoring/etable/etrie/CountPairData_1_2.fwd.hh>
23 #include <core/scoring/etable/etrie/CountPairData_1_3.fwd.hh>
24 #include <core/scoring/etable/etrie/CountPairDataGeneric.hh>
25 
26 #include <core/scoring/trie/TrieCountPairBase.hh>
27 #include <core/scoring/trie/RotamerTrie.fwd.hh>
28 
29 // AUTO-REMOVED #include <core/scoring/etable/count_pair/CountPairCrossover3.hh>
30 #include <core/scoring/etable/Etable.fwd.hh>
31 //XRW_B_T1
32 //#include <core/scoring/etable/CoarseEtableEnergy.fwd.hh>
33 //XRW_E_T1
34 #include <core/scoring/hackelec/HackElecEnergy.fwd.hh>
35 #include <core/scoring/methods/MMLJEnergyInter.fwd.hh>
36 
37 #include <core/scoring/hbonds/HBondEnergy.fwd.hh>
38 #include <core/scoring/hbonds/hbtrie/HBCPData.fwd.hh>
39 
40 // Project Headers
41 #include <core/types.hh>
42 
43 // Objexx FCL Headers
44 #include <ObjexxFCL/FArray2D.fwd.hh>
45 
46 #include <core/scoring/etable/count_pair/CountPairFunction.hh>
47 #include <utility/vector1.hh>
48 
49 
50 namespace core {
51 namespace scoring {
52 namespace etable {
53 namespace etrie {
54 
55 class TrieCountPairGeneric : public trie::TrieCountPairBase
56 {
57 private:
58  /// The number of bonds separating the two residues; for bonds, this is 1, for pseudobonds,
59  /// its the number of intervening bonds between the two residue-connection atoms through
60  /// the third party residue(s).
61  utility::vector1< Size > connection_gaps_;
62 
63  // "false" means that atom interactions at the crossover separation should be downweighted but counted.
64  // "true" means that atom interactions at the crossover separation are counted at full strength.
65  bool hard_crossover_;
66 
67  Size crossover_;
68  Size const res1_cpdat_;
69  Size const res2_cpdat_;
70 
71 
72 public:
73 
74  /// Grab bond and pseudobond information out of the two residues at construction time.
75  TrieCountPairGeneric(
76  conformation::Residue const & res1,
77  conformation::Residue const & res2,
78  Size res1_cpdat_for_res2,
79  Size res2_cpdat_for_res1
80  );
81 
82  void crossover( Size setting );
83  void hard_crossover( bool setting );
84 
85  ///------------ Useful Functions ------------------///
86  bool operator () (
87  CountPairDataGeneric const & at1dat,
88  CountPairDataGeneric const & at2dat,
89  Real & weight,
90  Size & path_dist)
91  {
92  assert( connection_gaps_.size() == at1dat.conn_dat( res1_cpdat_ ).size() );
93  assert( connection_gaps_.size() == at2dat.conn_dat( res2_cpdat_ ).size() );
94  Size minimum_distance = INFINITE_SEPARATION;
95  for ( Size ii = 1; ii <= connection_gaps_.size(); ++ii ) {
96  Size iidist = at1dat.conn_dat( res1_cpdat_ )[ ii ] + at2dat.conn_dat( res2_cpdat_ )[ ii ] + connection_gaps_[ ii ];
97  if ( iidist < minimum_distance ) minimum_distance = iidist;
98  }
99  path_dist = minimum_distance;
100  if ( !hard_crossover_ && minimum_distance == crossover_ ) weight = count_pair::CountPairFunction::cp_half;
101  return minimum_distance >= crossover_;
102  }
103 
104  static
105  void
106  print();
107 
108 
109  ///---------- TYPE RESOLUTION FUNCTIONS ----------///
110  virtual
111  void
112  resolve_trie_vs_trie(
113  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
114  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
115  etable::TableLookupEvaluator const & sfxn,
116  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
117  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
118 
119  virtual
120  void
121  resolve_trie_vs_trie(
122  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
123  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
124  etable::TableLookupEvaluator const & sfxn,
125  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
126  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
127 
128  virtual
129  void
130  resolve_trie_vs_trie(
131  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
132  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
133  etable::TableLookupEvaluator const & sfxn,
134  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
135  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
136 
137  virtual
138  void
139  resolve_trie_vs_trie(
140  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
141  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
142  etable::TableLookupEvaluator const & sfxn,
143  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
144  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
145 
146  virtual
147  void
148  resolve_trie_vs_trie(
149  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
150  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
151  etable::TableLookupEvaluator const & sfxn,
152  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
153  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
154 
155  virtual
156  void
157  resolve_trie_vs_trie(
158  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
159  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
160  etable::TableLookupEvaluator const & sfxn,
161  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
162  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
163 
164  virtual
165  void
166  resolve_trie_vs_trie(
167  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
168  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
169  etable::TableLookupEvaluator const & sfxn,
170  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
171  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
172 
173  virtual
174  void
175  resolve_trie_vs_trie(
176  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
177  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
178  etable::TableLookupEvaluator const & sfxn,
179  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
180  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
181 
182  virtual
183  void
184  resolve_trie_vs_trie(
185  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
186  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
187  etable::TableLookupEvaluator const & sfxn,
188  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
189  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
190 
191  virtual
192  void
193  resolve_trie_vs_trie(
194  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
195  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
196  etable::TableLookupEvaluator const & sfxn,
197  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
198  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
199 
200  virtual
201  void
202  resolve_trie_vs_trie(
203  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
204  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
205  etable::TableLookupEvaluator const & sfxn,
206  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
207  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
208 
209  virtual
210  void
211  resolve_trie_vs_trie(
212  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
213  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
214  etable::TableLookupEvaluator const & sfxn,
215  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
216  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
217 
218  virtual
219  void
220  resolve_trie_vs_trie(
221  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
222  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
223  etable::TableLookupEvaluator const & sfxn,
224  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
225  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
226 
227  virtual
228  void
229  resolve_trie_vs_trie(
230  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
231  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
232  etable::TableLookupEvaluator const & sfxn,
233  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
234  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
235 
236  virtual
237  void
238  resolve_trie_vs_trie(
239  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
240  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
241  etable::TableLookupEvaluator const & sfxn,
242  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
243  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
244 
245  virtual
246  void
247  resolve_trie_vs_trie(
248  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
249  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
250  etable::TableLookupEvaluator const & sfxn,
251  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
252  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
253 
254  virtual
255  void
256  resolve_trie_vs_path(
257  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
258  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
259  etable::TableLookupEvaluator const & sfxn,
260  utility::vector1< core::PackerEnergy > & pair_energy_vector,
261  utility::vector1< core::PackerEnergy > & temp_vector);
262 
263  virtual
264  void
265  resolve_trie_vs_path(
266  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
267  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
268  etable::TableLookupEvaluator const & sfxn,
269  utility::vector1< core::PackerEnergy > & pair_energy_vector,
270  utility::vector1< core::PackerEnergy > & temp_vector);
271 
272  virtual
273  void
274  resolve_trie_vs_path(
275  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
276  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
277  etable::TableLookupEvaluator const & sfxn,
278  utility::vector1< core::PackerEnergy > & pair_energy_vector,
279  utility::vector1< core::PackerEnergy > & temp_vector);
280 
281  virtual
282  void
283  resolve_trie_vs_path(
284  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
285  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
286  etable::TableLookupEvaluator const & sfxn,
287  utility::vector1< core::PackerEnergy > & pair_energy_vector,
288  utility::vector1< core::PackerEnergy > & temp_vector);
289 
290  virtual
291  void
292  resolve_trie_vs_path(
293  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
294  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
295  etable::TableLookupEvaluator const & sfxn,
296  utility::vector1< core::PackerEnergy > & pair_energy_vector,
297  utility::vector1< core::PackerEnergy > & temp_vector);
298 
299  virtual
300  void
301  resolve_trie_vs_path(
302  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
303  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
304  etable::TableLookupEvaluator const & sfxn,
305  utility::vector1< core::PackerEnergy > & pair_energy_vector,
306  utility::vector1< core::PackerEnergy > & temp_vector);
307 
308  virtual
309  void
310  resolve_trie_vs_path(
311  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
312  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
313  etable::TableLookupEvaluator const & sfxn,
314  utility::vector1< core::PackerEnergy > & pair_energy_vector,
315  utility::vector1< core::PackerEnergy > & temp_vector);
316 
317  virtual
318  void
319  resolve_trie_vs_path(
320  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
321  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
322  etable::TableLookupEvaluator const & sfxn,
323  utility::vector1< core::PackerEnergy > & pair_energy_vector,
324  utility::vector1< core::PackerEnergy > & temp_vector);
325 
326  virtual
327  void
328  resolve_trie_vs_path(
329  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
330  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
331  etable::TableLookupEvaluator const & sfxn,
332  utility::vector1< core::PackerEnergy > & pair_energy_vector,
333  utility::vector1< core::PackerEnergy > & temp_vector);
334 
335  virtual
336  void
337  resolve_trie_vs_path(
338  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
339  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
340  etable::TableLookupEvaluator const & sfxn,
341  utility::vector1< core::PackerEnergy > & pair_energy_vector,
342  utility::vector1< core::PackerEnergy > & temp_vector);
343 
344  virtual
345  void
346  resolve_trie_vs_path(
347  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
348  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
349  etable::TableLookupEvaluator const & sfxn,
350  utility::vector1< core::PackerEnergy > & pair_energy_vector,
351  utility::vector1< core::PackerEnergy > & temp_vector);
352 
353  virtual
354  void
355  resolve_trie_vs_path(
356  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
357  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
358  etable::TableLookupEvaluator const & sfxn,
359  utility::vector1< core::PackerEnergy > & pair_energy_vector,
360  utility::vector1< core::PackerEnergy > & temp_vector);
361 
362  virtual
363  void
364  resolve_trie_vs_path(
365  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
366  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
367  etable::TableLookupEvaluator const & sfxn,
368  utility::vector1< core::PackerEnergy > & pair_energy_vector,
369  utility::vector1< core::PackerEnergy > & temp_vector);
370 
371  virtual
372  void
373  resolve_trie_vs_path(
374  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
375  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
376  etable::TableLookupEvaluator const & sfxn,
377  utility::vector1< core::PackerEnergy > & pair_energy_vector,
378  utility::vector1< core::PackerEnergy > & temp_vector);
379 
380  virtual
381  void
382  resolve_trie_vs_path(
383  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
384  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
385  etable::TableLookupEvaluator const & sfxn,
386  utility::vector1< core::PackerEnergy > & pair_energy_vector,
387  utility::vector1< core::PackerEnergy > & temp_vector);
388 
389  virtual
390  void
391  resolve_trie_vs_path(
392  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
393  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
394  etable::TableLookupEvaluator const & sfxn,
395  utility::vector1< core::PackerEnergy > & pair_energy_vector,
396  utility::vector1< core::PackerEnergy > & temp_vector);
397 
398 
399  //////////////////////////////////// EtableEnergy -- analytic evaluation /////////////////////////////////
400 
401  virtual
402  void
403  resolve_trie_vs_trie(
404  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
405  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
406  etable::AnalyticEtableEvaluator const & sfxn,
407  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
408  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
409 
410  virtual
411  void
412  resolve_trie_vs_trie(
413  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
414  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
415  etable::AnalyticEtableEvaluator const & sfxn,
416  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
417  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
418 
419  virtual
420  void
421  resolve_trie_vs_trie(
422  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
423  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
424  etable::AnalyticEtableEvaluator const & sfxn,
425  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
426  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
427 
428  virtual
429  void
430  resolve_trie_vs_trie(
431  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
432  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
433  etable::AnalyticEtableEvaluator const & sfxn,
434  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
435  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
436 
437  virtual
438  void
439  resolve_trie_vs_trie(
440  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
441  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
442  etable::AnalyticEtableEvaluator const & sfxn,
443  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
444  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
445 
446  virtual
447  void
448  resolve_trie_vs_trie(
449  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
450  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
451  etable::AnalyticEtableEvaluator const & sfxn,
452  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
453  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
454 
455  virtual
456  void
457  resolve_trie_vs_trie(
458  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
459  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
460  etable::AnalyticEtableEvaluator const & sfxn,
461  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
462  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
463 
464  virtual
465  void
466  resolve_trie_vs_trie(
467  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
468  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
469  etable::AnalyticEtableEvaluator const & sfxn,
470  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
471  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
472 
473  virtual
474  void
475  resolve_trie_vs_trie(
476  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
477  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
478  etable::AnalyticEtableEvaluator const & sfxn,
479  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
480  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
481 
482  virtual
483  void
484  resolve_trie_vs_trie(
485  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
486  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
487  etable::AnalyticEtableEvaluator const & sfxn,
488  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
489  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
490 
491  virtual
492  void
493  resolve_trie_vs_trie(
494  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
495  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
496  etable::AnalyticEtableEvaluator const & sfxn,
497  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
498  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
499 
500  virtual
501  void
502  resolve_trie_vs_trie(
503  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
504  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
505  etable::AnalyticEtableEvaluator const & sfxn,
506  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
507  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
508 
509  virtual
510  void
511  resolve_trie_vs_trie(
512  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
513  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
514  etable::AnalyticEtableEvaluator const & sfxn,
515  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
516  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
517 
518  virtual
519  void
520  resolve_trie_vs_trie(
521  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
522  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
523  etable::AnalyticEtableEvaluator const & sfxn,
524  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
525  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
526 
527  virtual
528  void
529  resolve_trie_vs_trie(
530  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
531  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
532  etable::AnalyticEtableEvaluator const & sfxn,
533  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
534  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
535 
536  virtual
537  void
538  resolve_trie_vs_trie(
539  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
540  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
541  etable::AnalyticEtableEvaluator const & sfxn,
542  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
543  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
544 
545  virtual
546  void
547  resolve_trie_vs_path(
548  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
549  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
550  etable::AnalyticEtableEvaluator const & sfxn,
551  utility::vector1< core::PackerEnergy > & pair_energy_vector,
552  utility::vector1< core::PackerEnergy > & temp_vector);
553 
554  virtual
555  void
556  resolve_trie_vs_path(
557  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
558  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
559  etable::AnalyticEtableEvaluator const & sfxn,
560  utility::vector1< core::PackerEnergy > & pair_energy_vector,
561  utility::vector1< core::PackerEnergy > & temp_vector);
562 
563  virtual
564  void
565  resolve_trie_vs_path(
566  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
567  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
568  etable::AnalyticEtableEvaluator const & sfxn,
569  utility::vector1< core::PackerEnergy > & pair_energy_vector,
570  utility::vector1< core::PackerEnergy > & temp_vector);
571 
572  virtual
573  void
574  resolve_trie_vs_path(
575  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
576  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
577  etable::AnalyticEtableEvaluator const & sfxn,
578  utility::vector1< core::PackerEnergy > & pair_energy_vector,
579  utility::vector1< core::PackerEnergy > & temp_vector);
580 
581  virtual
582  void
583  resolve_trie_vs_path(
584  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
585  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
586  etable::AnalyticEtableEvaluator const & sfxn,
587  utility::vector1< core::PackerEnergy > & pair_energy_vector,
588  utility::vector1< core::PackerEnergy > & temp_vector);
589 
590  virtual
591  void
592  resolve_trie_vs_path(
593  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
594  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
595  etable::AnalyticEtableEvaluator const & sfxn,
596  utility::vector1< core::PackerEnergy > & pair_energy_vector,
597  utility::vector1< core::PackerEnergy > & temp_vector);
598 
599  virtual
600  void
601  resolve_trie_vs_path(
602  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
603  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
604  etable::AnalyticEtableEvaluator const & sfxn,
605  utility::vector1< core::PackerEnergy > & pair_energy_vector,
606  utility::vector1< core::PackerEnergy > & temp_vector);
607 
608  virtual
609  void
610  resolve_trie_vs_path(
611  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
612  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
613  etable::AnalyticEtableEvaluator const & sfxn,
614  utility::vector1< core::PackerEnergy > & pair_energy_vector,
615  utility::vector1< core::PackerEnergy > & temp_vector);
616 
617  virtual
618  void
619  resolve_trie_vs_path(
620  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
621  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
622  etable::AnalyticEtableEvaluator const & sfxn,
623  utility::vector1< core::PackerEnergy > & pair_energy_vector,
624  utility::vector1< core::PackerEnergy > & temp_vector);
625 
626  virtual
627  void
628  resolve_trie_vs_path(
629  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
630  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
631  etable::AnalyticEtableEvaluator const & sfxn,
632  utility::vector1< core::PackerEnergy > & pair_energy_vector,
633  utility::vector1< core::PackerEnergy > & temp_vector);
634 
635  virtual
636  void
637  resolve_trie_vs_path(
638  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
639  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
640  etable::AnalyticEtableEvaluator const & sfxn,
641  utility::vector1< core::PackerEnergy > & pair_energy_vector,
642  utility::vector1< core::PackerEnergy > & temp_vector);
643 
644  virtual
645  void
646  resolve_trie_vs_path(
647  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
648  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
649  etable::AnalyticEtableEvaluator const & sfxn,
650  utility::vector1< core::PackerEnergy > & pair_energy_vector,
651  utility::vector1< core::PackerEnergy > & temp_vector);
652 
653  virtual
654  void
655  resolve_trie_vs_path(
656  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
657  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
658  etable::AnalyticEtableEvaluator const & sfxn,
659  utility::vector1< core::PackerEnergy > & pair_energy_vector,
660  utility::vector1< core::PackerEnergy > & temp_vector);
661 
662  virtual
663  void
664  resolve_trie_vs_path(
665  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
666  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
667  etable::AnalyticEtableEvaluator const & sfxn,
668  utility::vector1< core::PackerEnergy > & pair_energy_vector,
669  utility::vector1< core::PackerEnergy > & temp_vector);
670 
671  virtual
672  void
673  resolve_trie_vs_path(
674  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
675  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
676  etable::AnalyticEtableEvaluator const & sfxn,
677  utility::vector1< core::PackerEnergy > & pair_energy_vector,
678  utility::vector1< core::PackerEnergy > & temp_vector);
679 
680  virtual
681  void
682  resolve_trie_vs_path(
683  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
684  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
685  etable::AnalyticEtableEvaluator const & sfxn,
686  utility::vector1< core::PackerEnergy > & pair_energy_vector,
687  utility::vector1< core::PackerEnergy > & temp_vector);
688 
689 
690  // HBONDS
691  virtual
692  void
693  resolve_trie_vs_trie(
694  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
695  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
696  hbonds::HBondEnergy const & sfxn,
697  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
698  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
699 
700 
701  virtual
702  void
703  resolve_trie_vs_path(
704  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
705  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
706  hbonds::HBondEnergy const & sfxn,
707  utility::vector1< core::PackerEnergy > & pair_energy_vector,
708  utility::vector1< core::PackerEnergy > & temp_vector);
709 
710 /// Hack Elec Energy
711 
712 
713  virtual
714  void
715  resolve_trie_vs_trie(
716  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
717  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
718  hackelec::HackElecEnergy const & sfxn,
719  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
720  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
721 
722  virtual
723  void
724  resolve_trie_vs_trie(
725  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
726  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
727  hackelec::HackElecEnergy const & sfxn,
728  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
729  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
730 
731  virtual
732  void
733  resolve_trie_vs_trie(
734  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
735  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
736  hackelec::HackElecEnergy const & sfxn,
737  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
738  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
739 
740  virtual
741  void
742  resolve_trie_vs_trie(
743  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
744  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
745  hackelec::HackElecEnergy const & sfxn,
746  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
747  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
748 
749  virtual
750  void
751  resolve_trie_vs_trie(
752  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
753  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
754  hackelec::HackElecEnergy const & sfxn,
755  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
756  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
757 
758  virtual
759  void
760  resolve_trie_vs_trie(
761  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
762  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
763  hackelec::HackElecEnergy const & sfxn,
764  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
765  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
766 
767  virtual
768  void
769  resolve_trie_vs_trie(
770  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
771  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
772  hackelec::HackElecEnergy const & sfxn,
773  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
774  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
775 
776  virtual
777  void
778  resolve_trie_vs_trie(
779  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
780  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
781  hackelec::HackElecEnergy const & sfxn,
782  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
783  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
784 
785  virtual
786  void
787  resolve_trie_vs_trie(
788  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
789  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
790  hackelec::HackElecEnergy const & sfxn,
791  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
792  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
793 
794  virtual
795  void
796  resolve_trie_vs_trie(
797  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
798  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
799  hackelec::HackElecEnergy const & sfxn,
800  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
801  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
802 
803  virtual
804  void
805  resolve_trie_vs_trie(
806  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
807  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
808  hackelec::HackElecEnergy const & sfxn,
809  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
810  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
811 
812  virtual
813  void
814  resolve_trie_vs_trie(
815  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
816  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
817  hackelec::HackElecEnergy const & sfxn,
818  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
819  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
820 
821  virtual
822  void
823  resolve_trie_vs_trie(
824  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
825  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
826  hackelec::HackElecEnergy const & sfxn,
827  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
828  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
829 
830  virtual
831  void
832  resolve_trie_vs_trie(
833  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
834  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
835  hackelec::HackElecEnergy const & sfxn,
836  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
837  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
838 
839  virtual
840  void
841  resolve_trie_vs_trie(
842  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
843  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
844  hackelec::HackElecEnergy const & sfxn,
845  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
846  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
847 
848  virtual
849  void
850  resolve_trie_vs_trie(
851  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
852  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
853  hackelec::HackElecEnergy const & sfxn,
854  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
855  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
856 
857  virtual
858  void
859  resolve_trie_vs_path(
860  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
861  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
862  hackelec::HackElecEnergy const & sfxn,
863  utility::vector1< core::PackerEnergy > & pair_energy_vector,
864  utility::vector1< core::PackerEnergy > & temp_vector);
865 
866  virtual
867  void
868  resolve_trie_vs_path(
869  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
870  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
871  hackelec::HackElecEnergy const & sfxn,
872  utility::vector1< core::PackerEnergy > & pair_energy_vector,
873  utility::vector1< core::PackerEnergy > & temp_vector);
874 
875  virtual
876  void
877  resolve_trie_vs_path(
878  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
879  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
880  hackelec::HackElecEnergy const & sfxn,
881  utility::vector1< core::PackerEnergy > & pair_energy_vector,
882  utility::vector1< core::PackerEnergy > & temp_vector);
883 
884  virtual
885  void
886  resolve_trie_vs_path(
887  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
888  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
889  hackelec::HackElecEnergy const & sfxn,
890  utility::vector1< core::PackerEnergy > & pair_energy_vector,
891  utility::vector1< core::PackerEnergy > & temp_vector);
892 
893  virtual
894  void
895  resolve_trie_vs_path(
896  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
897  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
898  hackelec::HackElecEnergy const & sfxn,
899  utility::vector1< core::PackerEnergy > & pair_energy_vector,
900  utility::vector1< core::PackerEnergy > & temp_vector);
901 
902  virtual
903  void
904  resolve_trie_vs_path(
905  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
906  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
907  hackelec::HackElecEnergy const & sfxn,
908  utility::vector1< core::PackerEnergy > & pair_energy_vector,
909  utility::vector1< core::PackerEnergy > & temp_vector);
910 
911  virtual
912  void
913  resolve_trie_vs_path(
914  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
915  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
916  hackelec::HackElecEnergy const & sfxn,
917  utility::vector1< core::PackerEnergy > & pair_energy_vector,
918  utility::vector1< core::PackerEnergy > & temp_vector);
919 
920  virtual
921  void
922  resolve_trie_vs_path(
923  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
924  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
925  hackelec::HackElecEnergy const & sfxn,
926  utility::vector1< core::PackerEnergy > & pair_energy_vector,
927  utility::vector1< core::PackerEnergy > & temp_vector);
928 
929  virtual
930  void
931  resolve_trie_vs_path(
932  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
933  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
934  hackelec::HackElecEnergy const & sfxn,
935  utility::vector1< core::PackerEnergy > & pair_energy_vector,
936  utility::vector1< core::PackerEnergy > & temp_vector);
937 
938  virtual
939  void
940  resolve_trie_vs_path(
941  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
942  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
943  hackelec::HackElecEnergy const & sfxn,
944  utility::vector1< core::PackerEnergy > & pair_energy_vector,
945  utility::vector1< core::PackerEnergy > & temp_vector);
946 
947  virtual
948  void
949  resolve_trie_vs_path(
950  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
951  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
952  hackelec::HackElecEnergy const & sfxn,
953  utility::vector1< core::PackerEnergy > & pair_energy_vector,
954  utility::vector1< core::PackerEnergy > & temp_vector);
955 
956  virtual
957  void
958  resolve_trie_vs_path(
959  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
960  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
961  hackelec::HackElecEnergy const & sfxn,
962  utility::vector1< core::PackerEnergy > & pair_energy_vector,
963  utility::vector1< core::PackerEnergy > & temp_vector);
964 
965  virtual
966  void
967  resolve_trie_vs_path(
968  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
969  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
970  hackelec::HackElecEnergy const & sfxn,
971  utility::vector1< core::PackerEnergy > & pair_energy_vector,
972  utility::vector1< core::PackerEnergy > & temp_vector);
973 
974  virtual
975  void
976  resolve_trie_vs_path(
977  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
978  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
979  hackelec::HackElecEnergy const & sfxn,
980  utility::vector1< core::PackerEnergy > & pair_energy_vector,
981  utility::vector1< core::PackerEnergy > & temp_vector);
982 
983  virtual
984  void
985  resolve_trie_vs_path(
986  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
987  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
988  hackelec::HackElecEnergy const & sfxn,
989  utility::vector1< core::PackerEnergy > & pair_energy_vector,
990  utility::vector1< core::PackerEnergy > & temp_vector);
991 
992  virtual
993  void
994  resolve_trie_vs_path(
995  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
996  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
997  hackelec::HackElecEnergy const & sfxn,
998  utility::vector1< core::PackerEnergy > & pair_energy_vector,
999  utility::vector1< core::PackerEnergy > & temp_vector);
1000 
1001  /////////////////////////// MMLJEnergyInter //////////////////////////////
1002  virtual
1003  void
1004  resolve_trie_vs_trie(
1005  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1006  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1007  methods::MMLJEnergyInter const & sfxn,
1008  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1009  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1010 
1011  virtual
1012  void
1013  resolve_trie_vs_trie(
1014  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1015  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1016  methods::MMLJEnergyInter const & sfxn,
1017  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1018  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1019 
1020  virtual
1021  void
1022  resolve_trie_vs_trie(
1023  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1024  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1025  methods::MMLJEnergyInter const & sfxn,
1026  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1027  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1028 
1029  virtual
1030  void
1031  resolve_trie_vs_trie(
1032  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1033  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1034  methods::MMLJEnergyInter const & sfxn,
1035  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1036  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1037 
1038  virtual
1039  void
1040  resolve_trie_vs_trie(
1041  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1042  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1043  methods::MMLJEnergyInter const & sfxn,
1044  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1045  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1046 
1047  virtual
1048  void
1049  resolve_trie_vs_trie(
1050  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1051  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1052  methods::MMLJEnergyInter const & sfxn,
1053  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1054  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1055 
1056  virtual
1057  void
1058  resolve_trie_vs_trie(
1059  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1060  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1061  methods::MMLJEnergyInter const & sfxn,
1062  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1063  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1064 
1065  virtual
1066  void
1067  resolve_trie_vs_trie(
1068  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1069  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1070  methods::MMLJEnergyInter const & sfxn,
1071  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1072  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1073 
1074  virtual
1075  void
1076  resolve_trie_vs_trie(
1077  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1078  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1079  methods::MMLJEnergyInter const & sfxn,
1080  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1081  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1082 
1083  virtual
1084  void
1085  resolve_trie_vs_trie(
1086  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1087  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1088  methods::MMLJEnergyInter const & sfxn,
1089  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1090  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1091 
1092  virtual
1093  void
1094  resolve_trie_vs_trie(
1095  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1096  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1097  methods::MMLJEnergyInter const & sfxn,
1098  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1099  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1100 
1101  virtual
1102  void
1103  resolve_trie_vs_trie(
1104  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1105  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1106  methods::MMLJEnergyInter const & sfxn,
1107  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1108  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1109 
1110  virtual
1111  void
1112  resolve_trie_vs_trie(
1113  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1114  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1115  methods::MMLJEnergyInter const & sfxn,
1116  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1117  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1118 
1119  virtual
1120  void
1121  resolve_trie_vs_trie(
1122  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1123  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1124  methods::MMLJEnergyInter const & sfxn,
1125  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1126  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1127 
1128  virtual
1129  void
1130  resolve_trie_vs_trie(
1131  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1132  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1133  methods::MMLJEnergyInter const & sfxn,
1134  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1135  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1136 
1137  virtual
1138  void
1139  resolve_trie_vs_trie(
1140  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1141  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1142  methods::MMLJEnergyInter const & sfxn,
1143  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1144  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1145 
1146  virtual
1147  void
1148  resolve_trie_vs_path(
1149  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1150  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1151  methods::MMLJEnergyInter const & sfxn,
1152  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1153  utility::vector1< core::PackerEnergy > & temp_vector);
1154 
1155  virtual
1156  void
1157  resolve_trie_vs_path(
1158  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1159  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1160  methods::MMLJEnergyInter const & sfxn,
1161  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1162  utility::vector1< core::PackerEnergy > & temp_vector);
1163 
1164  virtual
1165  void
1166  resolve_trie_vs_path(
1167  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1168  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1169  methods::MMLJEnergyInter const & sfxn,
1170  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1171  utility::vector1< core::PackerEnergy > & temp_vector);
1172 
1173  virtual
1174  void
1175  resolve_trie_vs_path(
1176  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1177  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1178  methods::MMLJEnergyInter const & sfxn,
1179  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1180  utility::vector1< core::PackerEnergy > & temp_vector);
1181 
1182  virtual
1183  void
1184  resolve_trie_vs_path(
1185  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1186  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1187  methods::MMLJEnergyInter const & sfxn,
1188  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1189  utility::vector1< core::PackerEnergy > & temp_vector);
1190 
1191  virtual
1192  void
1193  resolve_trie_vs_path(
1194  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1195  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1196  methods::MMLJEnergyInter const & sfxn,
1197  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1198  utility::vector1< core::PackerEnergy > & temp_vector);
1199 
1200  virtual
1201  void
1202  resolve_trie_vs_path(
1203  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1204  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1205  methods::MMLJEnergyInter const & sfxn,
1206  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1207  utility::vector1< core::PackerEnergy > & temp_vector);
1208 
1209  virtual
1210  void
1211  resolve_trie_vs_path(
1212  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1213  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1214  methods::MMLJEnergyInter const & sfxn,
1215  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1216  utility::vector1< core::PackerEnergy > & temp_vector);
1217 
1218  virtual
1219  void
1220  resolve_trie_vs_path(
1221  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1222  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1223  methods::MMLJEnergyInter const & sfxn,
1224  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1225  utility::vector1< core::PackerEnergy > & temp_vector);
1226 
1227  virtual
1228  void
1229  resolve_trie_vs_path(
1230  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1231  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1232  methods::MMLJEnergyInter const & sfxn,
1233  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1234  utility::vector1< core::PackerEnergy > & temp_vector);
1235 
1236  virtual
1237  void
1238  resolve_trie_vs_path(
1239  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1240  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1241  methods::MMLJEnergyInter const & sfxn,
1242  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1243  utility::vector1< core::PackerEnergy > & temp_vector);
1244 
1245  virtual
1246  void
1247  resolve_trie_vs_path(
1248  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1249  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1250  methods::MMLJEnergyInter const & sfxn,
1251  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1252  utility::vector1< core::PackerEnergy > & temp_vector);
1253 
1254  virtual
1255  void
1256  resolve_trie_vs_path(
1257  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1258  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1259  methods::MMLJEnergyInter const & sfxn,
1260  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1261  utility::vector1< core::PackerEnergy > & temp_vector);
1262 
1263  virtual
1264  void
1265  resolve_trie_vs_path(
1266  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1267  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1268  methods::MMLJEnergyInter const & sfxn,
1269  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1270  utility::vector1< core::PackerEnergy > & temp_vector);
1271 
1272  virtual
1273  void
1274  resolve_trie_vs_path(
1275  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1276  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1277  methods::MMLJEnergyInter const & sfxn,
1278  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1279  utility::vector1< core::PackerEnergy > & temp_vector);
1280 
1281  virtual
1282  void
1283  resolve_trie_vs_path(
1284  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1285  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1286  methods::MMLJEnergyInter const & sfxn,
1287  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1288  utility::vector1< core::PackerEnergy > & temp_vector);
1289 
1290 };
1291 
1292 
1293 
1294 } // namespace etrie
1295 } // namespace etable
1296 } // namespace scoring
1297 } // namespace core
1298 
1299 #endif
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