#include <LoopHashMoverWrapper.hh>

Inheritance diagram for protocols::loophash::LoopHashMoverWrapper:

Collaboration diagram for protocols::loophash::LoopHashMoverWrapper:

Public Member Functions
	LoopHashMoverWrapper ()

void	apply (core::pose::Pose &pose)

core::pose::PoseOP	get_additional_output ()
	Mechanism by which a mover may return multiple output poses from a single input pose. More...

virtual std::string	get_name () const
	Each derived class must specify its name. The class name. More...

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
	Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...

protocols::moves::MoverOP	clone () const
	clone has to be overridden only if clone invocation is expected. More...

protocols::moves::MoverOP	fresh_instance () const
	this is like clone(), except it generates a new mover object freshly created with the default ctor. This function should be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage). More...

virtual	~LoopHashMoverWrapper ()

Real	min_bbrms () const

void	min_bbrms (Real const min_bbrms)

Real	max_bbrms () const

void	max_bbrms (Real const max_bbrms)

Real	min_rms () const

void	min_rms (Real const min_rms)

Real	max_rms () const

void	max_rms (Real const max_rms)

Size	max_nstruct () const

void	max_nstruct (Size const max_nstruct)

utility::vector1< Size >	loop_sizes () const

void	add_loop_size (Size const loop_size)

void	cenfilter (protocols::filters::FilterOP cenfilter)

void	fafilter (protocols::filters::FilterOP fafilter)

void	ranking_fafilter (protocols::filters::FilterOP ranking_fafilter)

void	ranking_cenfilter (protocols::filters::FilterOP filter)

protocols::filters::FilterOP	ranking_cenfilter () const

void	relax_mover (protocols::relax::FastRelaxOP relax_mover)

Public Member Functions inherited from protocols::moves::Mover
	Mover ()

virtual	~Mover ()

virtual MoverSP	create ()

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	parse_state (SerializableState const &state)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)

virtual void	save_state (SerializableState &state)

	Mover (std::string const &type_name)
	sets the type for a mover; name_ has been removed (2010/05/14) More...

	Mover (Mover const &other)

Mover &	operator= (Mover const &other)
	assignment operator More...

virtual core::Real	last_proposal_density_ratio ()

std::string const &	type () const

std::string	get_current_tag () const
	A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...

void	set_current_tag (std::string const &new_tag)

virtual void	set_input_pose (PoseCOP pose)
	setter for poses contained for rms More...

virtual void	set_native_pose (PoseCOP pose)
	setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...

PoseCOP	get_input_pose () const

PoseCOP	get_native_pose () const

virtual void	test_move (Pose &pose)
	: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...

void	type (const std::string &type_in)

std::string	get_type () const

MoverStatus	get_last_move_status () const
	end parser interface, start Job Distributor interface///////////// More...

void	reset_status ()
	resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...

virtual void	clear_info ()
	Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...

virtual Strings &	info ()
	non-const accessor More...

virtual Strings const &	info () const
	const accessor More...

virtual bool	reinitialize_for_each_job () const
	this function informs the job distributor (august 08 vintage) whether this object needs to be freshly regenerated on each use. More...

virtual bool	reinitialize_for_new_input () const
	this function informs the job distributor (august 08 vintage) whether this object needs to be regenerated when the input pose is about to change (for example, if the mover has special code on the first apply() that is only valid for that one input pose). More...

void	set_current_job (protocols::jobdist::BasicJobCOP job)

jobdist::BasicJobCOP	get_current_job () const

Private Attributes
utility::vector1< Size >	loop_sizes_

LoopHashLibraryOP	library_

protocols::relax::FastRelaxOP	fastrelax_

Real	min_bbrms_

Real	max_bbrms_

Real	min_rms_

Real	max_rms_

Size	start_res_

Size	stop_res_

Size	max_struct_

Size	max_radius_

Size	max_struct_per_radius_

Size	max_nstruct_

Size	ncentroid_

Size	nfullatom_

Size	batch_size_

protocols::filters::FilterOP	cenfilter_

protocols::filters::FilterOP	ranking_cenfilter_

protocols::filters::FilterOP	fafilter_

protocols::filters::FilterOP	ranking_fafilter_

core::Size	nprefilter_

core::scoring::ScoreFunctionOP	prefilter_scorefxn_

bool	ideal_

bool	filter_by_phipsi_

std::vector< std::pair< Real, core::io::silent::SilentStructOP > >	all_structs_

core::Real	sample_weight_const_

Additional Inherited Members
Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagPtr	TagPtr

typedef core::pose::Pose	Pose

typedef core::pose::PoseCOP	PoseCOP

typedef protocols::filters::Filters_map	Filters_map

typedef std::list< std::string >	Strings

Static Public Member Functions inherited from protocols::moves::Mover
static std::string	name ()

static void	register_options ()
	overload this static method if you access options within the mover. these options will end up in -help of your application if users of this mover call register_options. do this recursively! if you use movers within your mover, call their register_options in your register_options() method. More...

Protected Member Functions inherited from protocols::moves::Mover
void	set_last_move_status (MoverStatus status)
	nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Detailed Description

Definition at line 39 of file LoopHashMoverWrapper.hh.

Constructor & Destructor Documentation

protocols::loophash::LoopHashMoverWrapper::LoopHashMoverWrapper ( )

Definition at line 97 of file LoopHashMoverWrapper.cc.

References loop_sizes_.

Referenced by clone().

protocols::loophash::LoopHashMoverWrapper::~LoopHashMoverWrapper ( )

virtual

Definition at line 120 of file LoopHashMoverWrapper.cc.

Member Function Documentation

void protocols::loophash::LoopHashMoverWrapper::add_loop_size ( Size const loop_size)

Definition at line 477 of file LoopHashMoverWrapper.cc.

References loop_sizes_.

Referenced by parse_my_tag().

void protocols::loophash::LoopHashMoverWrapper::apply ( core::pose::Pose & pose)

virtual

Implements protocols::moves::Mover.

Definition at line 123 of file LoopHashMoverWrapper.cc.

void protocols::loophash::LoopHashMoverWrapper::cenfilter ( protocols::filters::FilterOP cenfilter)

Definition at line 457 of file LoopHashMoverWrapper.cc.

References cenfilter_.

Referenced by parse_my_tag().

protocols::moves::MoverOP protocols::loophash::LoopHashMoverWrapper::clone ( ) const

inlinevirtual

clone has to be overridden only if clone invocation is expected.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Reimplemented from protocols::moves::Mover.

Definition at line 53 of file LoopHashMoverWrapper.hh.

References LoopHashMoverWrapper().

void protocols::loophash::LoopHashMoverWrapper::fafilter ( protocols::filters::FilterOP fafilter)

Definition at line 462 of file LoopHashMoverWrapper.cc.

References fafilter_.

Referenced by parse_my_tag().

protocols::moves::MoverOP protocols::loophash::LoopHashMoverWrapper::fresh_instance ( ) const

inlinevirtual

this is like clone(), except it generates a new mover object freshly created with the default ctor. This function should be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Reimplemented from protocols::moves::Mover.

Definition at line 54 of file LoopHashMoverWrapper.hh.

core::pose::PoseOP protocols::loophash::LoopHashMoverWrapper::get_additional_output ( )

virtual

Mechanism by which a mover may return multiple output poses from a single input pose.

fpd

Mechanism by which a mover may return multiple output poses from a single input pose. After apply is called, calling this function will return subsequent output poses. NULL is returned if the mover has no more output poses remaining. The base class implementation returns NULL always; multi-output movers must override this. RosettaScripts uses this interface to produce a 'branched' protocol.

Reimplemented from protocols::moves::Mover.

Definition at line 286 of file LoopHashMoverWrapper.cc.

References all_structs_.

std::string protocols::loophash::LoopHashMoverWrapper::get_name ( ) const

virtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

Definition at line 302 of file LoopHashMoverWrapper.cc.

References protocols::loophash::LoopHashMoverWrapperCreator::mover_name().

utility::vector1< Size > protocols::loophash::LoopHashMoverWrapper::loop_sizes ( ) const

Definition at line 472 of file LoopHashMoverWrapper.cc.

References loop_sizes_.

Referenced by parse_my_tag().

Real protocols::loophash::LoopHashMoverWrapper::max_bbrms ( ) const

Definition at line 407 of file LoopHashMoverWrapper.cc.

References max_bbrms_.

Referenced by apply(), and max_bbrms().

void protocols::loophash::LoopHashMoverWrapper::max_bbrms ( Real const max_bbrms)

Definition at line 427 of file LoopHashMoverWrapper.cc.

References max_bbrms(), and max_bbrms_.

Size protocols::loophash::LoopHashMoverWrapper::max_nstruct ( ) const

Definition at line 442 of file LoopHashMoverWrapper.cc.

References max_nstruct_.

Referenced by apply(), and max_nstruct().

void protocols::loophash::LoopHashMoverWrapper::max_nstruct ( Size const max_nstruct)

Definition at line 447 of file LoopHashMoverWrapper.cc.

References max_nstruct(), and max_nstruct_.

Real protocols::loophash::LoopHashMoverWrapper::max_rms ( ) const

Definition at line 417 of file LoopHashMoverWrapper.cc.

References max_rms_.

Referenced by apply(), and max_rms().

void protocols::loophash::LoopHashMoverWrapper::max_rms ( Real const max_rms)

Definition at line 437 of file LoopHashMoverWrapper.cc.

References max_rms(), and max_rms_.

Real protocols::loophash::LoopHashMoverWrapper::min_bbrms ( ) const

Definition at line 402 of file LoopHashMoverWrapper.cc.

References min_bbrms_.

Referenced by apply(), and min_bbrms().

void protocols::loophash::LoopHashMoverWrapper::min_bbrms ( Real const min_bbrms)

Definition at line 422 of file LoopHashMoverWrapper.cc.

References min_bbrms(), and min_bbrms_.

Real protocols::loophash::LoopHashMoverWrapper::min_rms ( ) const

Definition at line 412 of file LoopHashMoverWrapper.cc.

References min_rms_.

Referenced by apply(), and min_rms().

void protocols::loophash::LoopHashMoverWrapper::min_rms ( Real const min_rms)

Definition at line 432 of file LoopHashMoverWrapper.cc.

References min_rms(), and min_rms_.

void protocols::loophash::LoopHashMoverWrapper::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	filters,
		protocols::moves::Movers_map const &	movers,
		core::pose::Pose const &	pose
	)

virtual

Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Some movers need not be parsed, so we shouldn't stop executions. This, however, calls attention to the lack of this method, which could be due to something as silly as a wrong parameters definition.

Reimplemented from protocols::moves::Mover.

Definition at line 307 of file LoopHashMoverWrapper.cc.

References add_loop_size(), batch_size_, cenfilter(), fafilter(), fastrelax_, filter_by_phipsi_, protocols::moves::DataMap::get(), core::pose::get_resnum(), ideal_, library_, loop_sizes(), max_bbrms_, max_nstruct_, max_radius_, max_rms_, max_struct_, max_struct_per_radius_, min_bbrms_, min_rms_, ncentroid_, nfullatom_, nprefilter_, protocols::rosetta_scripts::parse_filter(), prefilter_scorefxn_, ranking_cenfilter(), ranking_fafilter(), relax_mover(), sample_weight_const_, start_res_, and stop_res_.