protocols::kinmatch::FunGroupTK Class Reference

#include <FunGroupTK.hh>

Inheritance diagram for protocols::kinmatch::FunGroupTK:

Collaboration diagram for protocols::kinmatch::FunGroupTK:

Public Member Functions
virtual	~FunGroupTK ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
	FunGroupTK (core::pose::Pose &p_in, utility::vector1< Size > &pos)
protocols::scoring::ImplicitFastClashCheck const &	ifc () const
virtual void	place_c (KRSQuery const &q, core::conformation::Residue const &qrsd, utility::vector1< core::conformation::ResidueOP > &hits) const =0
virtual void	place_h (KRSQuery const &q, core::conformation::Residue const &qrsd, utility::vector1< core::conformation::ResidueOP > &hits) const =0
virtual void	place_d (KRSQuery const &q, core::conformation::Residue const &qrsd, utility::vector1< core::conformation::ResidueOP > &hits) const =0

Protected Attributes
core::pose::PoseCOP	pose_
utility::vector1< Size > const	pos_
protocols::scoring::ImplicitFastClashCheckCOP	ifc_
std::map< std::string, utility::vector1 < core::kinematics::Stub > >	stb_
std::map< std::string, utility::vector1 < core::conformation::ResidueOP > >	rsd_
core::chemical::ResidueTypeSetCAP	frs_

Detailed Description

Definition at line 74 of file FunGroupTK.hh.

Constructor & Destructor Documentation

protocols::kinmatch::FunGroupTK::~FunGroupTK ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Definition at line 51 of file FunGroupTK.cc.

protocols::kinmatch::FunGroupTK::FunGroupTK	(	core::pose::Pose &	p_in,
		utility::vector1< Size > &	pos
	)

Definition at line 142 of file FunGroupTK.cc.

References core::conformation::ResidueFactory::create_residue(), frs_, core::chemical::ChemicalManager::get_instance(), ifc_, pos_, pose_, core::chemical::ChemicalManager::residue_type_set(), rsd_, and stb_.

Member Function Documentation

ImplicitFastClashCheck const & protocols::kinmatch::FunGroupTK::ifc

(

)

const

Definition at line 165 of file FunGroupTK.cc.

References ifc_.

Referenced by protocols::kinmatch::BruteFunGroupTK::place_c(), protocols::kinmatch::KinFunGroupTK::place_c(), protocols::kinmatch::BruteFunGroupTK::place_d(), protocols::kinmatch::KinFunGroupTK::place_d(), protocols::kinmatch::BruteFunGroupTK::place_h(), and protocols::kinmatch::KinFunGroupTK::place_h().

virtual void protocols::kinmatch::FunGroupTK::place_c ( KRSQuery const &  q, core::conformation::Residue const &  qrsd, utility::vector1< core::conformation::ResidueOP > &  hits  ) const

pure virtual

Implemented in protocols::kinmatch::KinFunGroupTK, and protocols::kinmatch::BruteFunGroupTK.

virtual void protocols::kinmatch::FunGroupTK::place_d ( KRSQuery const &  q, core::conformation::Residue const &  qrsd, utility::vector1< core::conformation::ResidueOP > &  hits  ) const

pure virtual

Implemented in protocols::kinmatch::KinFunGroupTK, and protocols::kinmatch::BruteFunGroupTK.

virtual void protocols::kinmatch::FunGroupTK::place_h ( KRSQuery const &  q, core::conformation::Residue const &  qrsd, utility::vector1< core::conformation::ResidueOP > &  hits  ) const

pure virtual

Implemented in protocols::kinmatch::KinFunGroupTK, and protocols::kinmatch::BruteFunGroupTK.

Member Data Documentation

core::chemical::ResidueTypeSetCAP protocols::kinmatch::FunGroupTK::frs_

protected

Definition at line 81 of file FunGroupTK.hh.

Referenced by FunGroupTK().

protocols::scoring::ImplicitFastClashCheckCOP protocols::kinmatch::FunGroupTK::ifc_

protected

Definition at line 78 of file FunGroupTK.hh.

Referenced by FunGroupTK(), and ifc().

utility::vector1<Size> const protocols::kinmatch::FunGroupTK::pos_

protected

Definition at line 77 of file FunGroupTK.hh.

Referenced by FunGroupTK(), protocols::kinmatch::BruteFunGroupTK::place_c(), protocols::kinmatch::KinFunGroupTK::place_c(), protocols::kinmatch::BruteFunGroupTK::place_d(), protocols::kinmatch::KinFunGroupTK::place_d(), protocols::kinmatch::BruteFunGroupTK::place_h(), and protocols::kinmatch::KinFunGroupTK::place_h().

core::pose::PoseCOP protocols::kinmatch::FunGroupTK::pose_

protected

Definition at line 76 of file FunGroupTK.hh.

Referenced by FunGroupTK().

std::map<std::string,utility::vector1<core::conformation::ResidueOP> > protocols::kinmatch::FunGroupTK::rsd_

protected

Definition at line 80 of file FunGroupTK.hh.

Referenced by FunGroupTK(), protocols::kinmatch::BruteFunGroupTK::place_c(), protocols::kinmatch::KinFunGroupTK::place_c(), protocols::kinmatch::BruteFunGroupTK::place_d(), protocols::kinmatch::KinFunGroupTK::place_d(), protocols::kinmatch::BruteFunGroupTK::place_h(), and protocols::kinmatch::KinFunGroupTK::place_h().

std::map<std::string,utility::vector1<core::kinematics::Stub> > protocols::kinmatch::FunGroupTK::stb_

protected

Definition at line 79 of file FunGroupTK.hh.

Referenced by FunGroupTK(), protocols::kinmatch::BruteFunGroupTK::place_c(), protocols::kinmatch::KinFunGroupTK::place_c(), protocols::kinmatch::BruteFunGroupTK::place_d(), protocols::kinmatch::KinFunGroupTK::place_d(), protocols::kinmatch::BruteFunGroupTK::place_h(), and protocols::kinmatch::KinFunGroupTK::place_h().

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The documentation for this class was generated from the following files:

• src/protocols/kinmatch/FunGroupTK.hh
• src/protocols/kinmatch/FunGroupTK.cc