CircularPermutation.hh

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// vi: set ts=2 noet:
//
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/// @file   protocols/fldsgn/CircularPermutation.hh
/// @brief
/// @author Nobuyasu Koga ( nobuyasu@u.washington.edu )

#ifndef INCLUDED_protocols_fldsgn_CircularPermutation_hh
#define INCLUDED_protocols_fldsgn_CircularPermutation_hh

// unit headers
#include <protocols/fldsgn/CircularPermutation.fwd.hh>

// type headers
#include <core/types.hh>

// package headers

// project headers
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <protocols/moves/Mover.hh>


// C++ headers
#include <string>

// parser headers
#include <utility/tag/Tag.fwd.hh>
#include <protocols/moves/DataMap.fwd.hh>


#include <utility/vector1.hh>

namespace protocols {
namespace fldsgn {


class CircularPermutation : public protocols::moves::Mover {


private: // typedefs


  typedef protocols::moves::Mover Super;


public: // typedefs


  //typedef std::string String;
  //typedef core::Real Real;
  typedef core::Size Size;
  typedef core::pose::Pose Pose;
  typedef core::kinematics::MoveMap MoveMap;
  typedef core::kinematics::MoveMapOP MoveMapOP;
  typedef protocols::moves::MoverOP MoverOP;

  // for parser
  typedef utility::tag::TagPtr TagPtr;
  typedef protocols::filters::Filters_map Filters_map;
  typedef protocols::moves::DataMap DataMap;
  typedef protocols::moves::Movers_map Movers_map;


public: // construct/destruct


  /// @brief default constructor
  CircularPermutation();

  /// @brief copy constructor
  CircularPermutation( CircularPermutation const & rval );

  /// @brief default destructor
  virtual ~CircularPermutation();


private: // disallow assignment


  /// @brief copy assignment
  /// @remarks Mover base class prevents this from working properly...
  CircularPermutation & operator =( CircularPermutation const & rval );


public: // virtual constructors


  /// @brief clone this object
  virtual
  MoverOP clone() const;

  /// @brief create this type of object
  virtual
  MoverOP fresh_instance() const;


public: // accessors


  /// @brief
  Size new_terminal_pos() const;


public: // mutators


  /// @brief
  void new_terminal_pos( Size const s );


public: // helper functions


  /// @brief
  Size which_chain( Size const s, Pose const pose ) const;

  /// @brief
  void split_chains( Pose & pose, utility::vector1< Size > const & pos );


public: // virtual main methods


  /// @brief apply defined moves to given Pose
  virtual
  void apply( Pose & pose );

  virtual std::string get_name() const;

public: //parser


  /// @brief parse xml file
  void parse_my_tag( TagPtr const tag,
                     DataMap &,
                     Filters_map const &,
                     Movers_map const &,
                     Pose const & );



private: // data


  /// @brief new N- & C- terminal position
  Size new_terminal_pos_;

  /// @brief
  bool ignore_chain_;

  Size split_;


};


} // namespace fldsgn
} // namespace protocols


#endif /* INCLUDED_protocols_fldsgn_CircularPermutation_HH */