#include <BindingStrainFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::BindingStrainFilter:

Collaboration diagram for protocols::protein_interface_design::filters::BindingStrainFilter:

Public Member Functions
	BindingStrainFilter ()
	default ctor More...

virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...

virtual void	report (std::ostream &out, core::pose::Pose const &pose) const

virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual protocols::filters::FilterOP	clone () const

virtual protocols::filters::FilterOP	fresh_instance () const

core::Real	compute (core::pose::Pose const &pose) const

virtual	~BindingStrainFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

core::Size	jump () const

void	jump (core::Size const j)

protocols::moves::MoverOP	relax_mover () const

void	relax_mover (protocols::moves::MoverOP const mover)

core::scoring::ScoreFunctionOP	scorefxn () const

void	scorefxn (core::scoring::ScoreFunctionOP scorefxn)

core::pack::task::TaskFactoryOP	task_factory () const

void	task_factory (core::pack::task::TaskFactoryOP task)

core::Real	threshold () const

void	threshold (core::Real const t)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Member Functions
void	unbind (core::pose::Pose &) const

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_

core::scoring::ScoreFunctionOP	scorefxn_

protocols::moves::MoverOP	relax_mover_

core::Size	jump_

core::Real	threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 36 of file BindingStrainFilter.hh.

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::BindingStrainFilter::parent

private

Definition at line 39 of file BindingStrainFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::BindingStrainFilter::BindingStrainFilter ( )

default ctor

Definition at line 46 of file BindingStrainFilter.cc.

Referenced by clone(), protocols::protein_interface_design::filters::BindingStrainFilterCreator::create_filter(), and fresh_instance().

protocols::protein_interface_design::filters::BindingStrainFilter::~BindingStrainFilter ( )

virtual

Definition at line 168 of file BindingStrainFilter.cc.

Member Function Documentation

bool protocols::protein_interface_design::filters::BindingStrainFilter::apply ( core::pose::Pose const & pose) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

Definition at line 96 of file BindingStrainFilter.cc.

References compute(), and threshold().

protocols::filters::FilterOP protocols::protein_interface_design::filters::BindingStrainFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 171 of file BindingStrainFilter.cc.

References BindingStrainFilter().

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::compute ( core::pose::Pose const & pose) const

Definition at line 110 of file BindingStrainFilter.cc.

References protocols::simple_filters::ScoreTypeFilter::compute(), core::pose::symmetry::is_symmetric(), scorefxn(), task_factory(), core::scoring::total_score, and unbind().

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::BindingStrainFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 164 of file BindingStrainFilter.cc.

References BindingStrainFilter().

core::Size protocols::protein_interface_design::filters::BindingStrainFilter::jump ( ) const

Definition at line 56 of file BindingStrainFilter.cc.

References jump_.

Referenced by parse_my_tag(), and unbind().

void protocols::protein_interface_design::filters::BindingStrainFilter::jump ( core::Size const j)

Definition at line 61 of file BindingStrainFilter.cc.

References jump_.

void protocols::protein_interface_design::filters::BindingStrainFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	movers,
		core::pose::Pose const &
	)

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 145 of file BindingStrainFilter.cc.

References jump(), protocols::rosetta_scripts::parse_mover(), protocols::rosetta_scripts::parse_score_function(), protocols::rosetta_scripts::parse_task_operations(), relax_mover(), scorefxn(), task_factory(), threshold(), and protocols::protein_interface_design::filters::TR().

protocols::moves::MoverOP protocols::protein_interface_design::filters::BindingStrainFilter::relax_mover ( ) const

Definition at line 182 of file BindingStrainFilter.cc.

References relax_mover_.

Referenced by parse_my_tag().

void protocols::protein_interface_design::filters::BindingStrainFilter::relax_mover ( protocols::moves::MoverOP const mover)

Definition at line 187 of file BindingStrainFilter.cc.

References relax_mover_.

void protocols::protein_interface_design::filters::BindingStrainFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 139 of file BindingStrainFilter.cc.

References compute().

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::report_sm ( core::pose::Pose const & ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 133 of file BindingStrainFilter.cc.

References compute().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::filters::BindingStrainFilter::scorefxn ( ) const

Definition at line 76 of file BindingStrainFilter.cc.

References scorefxn_.

Referenced by compute(), parse_my_tag(), and scorefxn().

void protocols::protein_interface_design::filters::BindingStrainFilter::scorefxn ( core::scoring::ScoreFunctionOP scorefxn)

Definition at line 81 of file BindingStrainFilter.cc.

References scorefxn(), and scorefxn_.

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::BindingStrainFilter::task_factory ( ) const

Definition at line 66 of file BindingStrainFilter.cc.

References task_factory_.

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::BindingStrainFilter::task_factory ( core::pack::task::TaskFactoryOP task)

Definition at line 71 of file BindingStrainFilter.cc.

References task_factory_.

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::threshold ( ) const

Definition at line 86 of file BindingStrainFilter.cc.

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::BindingStrainFilter::threshold ( core::Real const t)

Definition at line 91 of file BindingStrainFilter.cc.

References core::scoring::hbonds::t(), and threshold_.

void protocols::protein_interface_design::filters::BindingStrainFilter::unbind ( core::pose::Pose & pose) const

private

Definition at line 103 of file BindingStrainFilter.cc.

References protocols::rigid::RigidBodyTransMover::apply(), jump(), and protocols::rigid::RigidBodyTransMover::step_size().

Referenced by compute().

Member Data Documentation

core::Size protocols::protein_interface_design::filters::BindingStrainFilter::jump_

private

Definition at line 70 of file BindingStrainFilter.hh.

Referenced by jump().

protocols::moves::MoverOP protocols::protein_interface_design::filters::BindingStrainFilter::relax_mover_

private

Definition at line 69 of file BindingStrainFilter.hh.

Referenced by relax_mover().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::filters::BindingStrainFilter::scorefxn_

private

Definition at line 68 of file BindingStrainFilter.hh.

Referenced by scorefxn().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::BindingStrainFilter::task_factory_

private

Definition at line 67 of file BindingStrainFilter.hh.

Referenced by task_factory().

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::threshold_

private

Definition at line 71 of file BindingStrainFilter.hh.

Referenced by threshold().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/BindingStrainFilter.hh
src/protocols/protein_interface_design/filters/BindingStrainFilter.cc

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation