protocols::rna::RNA_IdealCoord Class Reference

#include <RNA_IdealCoord.hh>

Collaboration diagram for protocols::rna::RNA_IdealCoord:

Public Member Functions
	RNA_IdealCoord ()
	~RNA_IdealCoord ()
void	apply (Pose &pose, Size const seqpos, bool const is_north=true, bool const keep_backbone_torsion=true) const
void	apply (Pose &pose, utility::vector1< Size > const &pucker_conformations, bool const keep_backbone_torsion=true) const

Private Member Functions
void	init ()
bool	is_torsion_exists (Pose const &pose, id::TorsionID const &torsion_id) const

Private Attributes
utility::vector1< Pose >	ref_pose_list_
std::string const	path_

Detailed Description

Definition at line 40 of file RNA_IdealCoord.hh.

Constructor & Destructor Documentation

protocols::rna::RNA_IdealCoord::RNA_IdealCoord

(

)

Definition at line 43 of file RNA_IdealCoord.cc.

References init().

protocols::rna::RNA_IdealCoord::~RNA_IdealCoord

(

)

Definition at line 49 of file RNA_IdealCoord.cc.

Member Function Documentation

void protocols::rna::RNA_IdealCoord::apply	(	Pose &	pose,
		Size const	seqpos,
		bool const	is_north = true,
		bool const	keep_backbone_torsion = true
	)		const

Definition at line 84 of file RNA_IdealCoord.cc.

References core::scoring::dna::ALPHA, core::id::BB, core::scoring::dna::BETA, core::id::CHI, core::pose::copy_dofs_match_atom_names(), core::scoring::dna::EPSILON, core::scoring::dna::GAMMA, is_torsion_exists(), core::chemical::na_rad, core::chemical::na_rcy, core::chemical::na_rgu, core::chemical::na_ura, ref_pose_list_, core::pose::Pose::residue(), core::pose::Pose::set_torsion(), core::pose::Pose::torsion(), and core::scoring::dna::ZETA.

Referenced by apply(), protocols::rna::RNA_HelixAssembler::build_on_base_pair(), protocols::rna::RNA_HelixAssembler::set_Aform_torsions(), and protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler::standard_sampling().

void protocols::rna::RNA_IdealCoord::apply	(	Pose &	pose,
		utility::vector1< Size > const &	pucker_conformations,
		bool const	keep_backbone_torsion = true
	)		const

Definition at line 147 of file RNA_IdealCoord.cc.

References apply(), and core::pose::Pose::total_residue().

void protocols::rna::RNA_IdealCoord::init ( void  )

private

Definition at line 62 of file RNA_IdealCoord.cc.

References path_, core::import_pose::pose_from_pdb(), and ref_pose_list_.

Referenced by RNA_IdealCoord().

bool protocols::rna::RNA_IdealCoord::is_torsion_exists ( Pose const &  pose, id::TorsionID const &  torsion_id  ) const

private

Definition at line 52 of file RNA_IdealCoord.cc.

References core::pose::Pose::conformation(), core::conformation::Conformation::get_torsion_angle_atom_ids(), core::id::TorsionID::rsd(), and core::pose::Pose::total_residue().

Referenced by apply().

Member Data Documentation

std::string const protocols::rna::RNA_IdealCoord::path_

private

Definition at line 57 of file RNA_IdealCoord.hh.

Referenced by init().

utility::vector1< Pose > protocols::rna::RNA_IdealCoord::ref_pose_list_

private

Definition at line 56 of file RNA_IdealCoord.hh.

Referenced by apply(), and init().

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The documentation for this class was generated from the following files:

• src/protocols/rna/RNA_IdealCoord.hh
• src/protocols/rna/RNA_IdealCoord.cc