protocols::simple_moves::symmetry Namespace Reference

Classes
class	DetectSymmetry
class	DetectSymmetryMoverCreator
class	SetupForSymmetryMover
class	ExtractAsymmetricUnitMover
class	ExtractAsymmetricPoseMover
class	SetupForSymmetryMoverCreator
class	ExtractAsymmetricUnitMoverCreator
class	ExtractAsymmetricPoseMoverCreator
class	SetupNCSMover
class	SetupNCSMoverCreator
class	SymDockingInitialPerturbation
class	SymDockingSlideIntoContact
	Contrary to the name, slides things apart first, then together. More...
class	FaSymDockingSlideTogether
	Slides docking partners together by monitoring fa_rep. More...
class	SymmetrySlider
class	SequentialSymmetrySlider
class	OrderedSequentialSymmetrySlider
class	RandomSymmetrySlider
class	SymmetricRMSMover
class	SymMinMover
class	SymMinMoverCreator
class	SymPackRotamersMover
class	SymPackRotamersMoverCreator
class	SymRotamerTrialsMover
class	SymEnergyCutRotamerTrialsMover
class	SymRotamerTrialsMoverCreator
class	SymShakeStructureMover

Typedefs
typedef utility::pointer::owning_ptr < SymFoldandDockRbTrialMover >	SymFoldandDockRbTrialMoverOP
typedef utility::pointer::owning_ptr < SymFoldandDockRbTrialMover const >	SymFoldandDockRbTrialMoverCOP
typedef utility::pointer::owning_ptr < DetectSymmetryMover >	DetectSymmetryMoverOP
typedef utility::pointer::owning_ptr < DetectSymmetryMover const >	DetectSymmetryMoverCOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover >	SetupForSymmetryMoverOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover const >	SetupForSymmetryMoverCOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover >	ExtractAsymmetricUnitMoverOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover const >	ExtractAsymmetricUnitMoverCOP
typedef utility::pointer::owning_ptr < ExtractAsymmetricPoseMover >	ExtractAsymmetricPoseMoverOP
typedef utility::pointer::owning_ptr < ExtractAsymmetricPoseMover const >	ExtractAsymmetricPoseMoverCOP
typedef utility::pointer::owning_ptr < SetupNCSMover >	SetupNCSMoverOP
typedef utility::pointer::owning_ptr < SetupNCSMover const >	SetupNCSMoverCOP
typedef utility::pointer::owning_ptr < SymDockingInitialPerturbation >	SymDockingInitialPerturbationOP
typedef utility::pointer::owning_ptr < SymDockingInitialPerturbation const >	SymDockingInitialPerturbationCOP
typedef utility::pointer::owning_ptr < FaSymDockingSlideTogether >	FaSymDockingSlideTogetherOP
typedef utility::pointer::owning_ptr < FaSymDockingSlideTogether const >	FaSymDockingSlideTogetherCOP
typedef utility::pointer::owning_ptr < SymmetrySlider >	SymmetrySliderOP
typedef utility::pointer::owning_ptr < SymmetrySlider const >	SymmetrySliderCOP
typedef utility::pointer::owning_ptr < SequentialSymmetrySlider >	SequentialSymmetrySliderOP
typedef utility::pointer::owning_ptr < SequentialSymmetrySlider const >	SequentialSymmetrySliderCOP
typedef utility::pointer::owning_ptr < OrderedSequentialSymmetrySlider >	OrderedSequentialSymmetrySliderOP
typedef utility::pointer::owning_ptr < OrderedSequentialSymmetrySlider const >	OrderedSequentialSymmetrySliderCOP
typedef utility::pointer::owning_ptr < RandomSymmetrySlider >	RandomSymmetrySliderOP
typedef utility::pointer::owning_ptr < RandomSymmetrySlider const >	RandomSymmetrySliderCOP
typedef utility::pointer::owning_ptr < SymmetricRMSMover >	SymmetricRMSMoverOP
typedef utility::pointer::owning_ptr < SymmetricRMSMover const >	SymmetricRMSMoverCOP
typedef utility::pointer::owning_ptr < SymMinMover >	SymMinMoverOP
typedef utility::pointer::owning_ptr < SymMinMover const >	SymMinMoverCOP
typedef utility::pointer::owning_ptr < SymPackRotamersMover >	SymPackRotamersMoverOP
typedef utility::pointer::owning_ptr < SymPackRotamersMover const >	SymPackRotamersMoverCOP
typedef utility::pointer::owning_ptr < SymRotamerTrialsMover >	SymRotamerTrialsMoverOP
typedef utility::pointer::owning_ptr < SymRotamerTrialsMover const >	SymRotamerTrialsMoverCOP
typedef utility::pointer::owning_ptr < SymEnergyCutRotamerTrialsMover >	SymEnergyCutRotamerTrialsMoverOP
typedef utility::pointer::owning_ptr < SymEnergyCutRotamerTrialsMover const >	SymEnergyCutRotamerTrialsMoverCOP
typedef utility::pointer::owning_ptr < SymShakeStructureMover >	SymShakeStructureMoverOP
typedef utility::pointer::owning_ptr < SymShakeStructureMover const >	SymShakeStructureMoverCOP

Functions
static basic::Tracer	TR ("protocols.simple_moves.symmetry.DetectSymmetry")
static basic::Tracer	TR ("protocols.simple_moves.symmetry.SetupForSymmetryMover")
static basic::Tracer	TZ ("protocols.simple_moves.symmetry.SetupNCSMover")
static numeric::random::RandomGenerator	RG (4227034)
static basic::Tracer	TR ("protocols.simple_moves.symmetry.SymmetricRMSMover")

Typedef Documentation

typedef utility::pointer::owning_ptr< DetectSymmetryMover const > protocols::simple_moves::symmetry::DetectSymmetryMoverCOP

Definition at line 25 of file DetectSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< DetectSymmetryMover > protocols::simple_moves::symmetry::DetectSymmetryMoverOP

Definition at line 23 of file DetectSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< ExtractAsymmetricPoseMover const > protocols::simple_moves::symmetry::ExtractAsymmetricPoseMoverCOP

Definition at line 36 of file SetupForSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< ExtractAsymmetricPoseMover > protocols::simple_moves::symmetry::ExtractAsymmetricPoseMoverOP

Definition at line 34 of file SetupForSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< SetupForSymmetryMover const > protocols::simple_moves::symmetry::ExtractAsymmetricUnitMoverCOP

Definition at line 32 of file SetupForSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< SetupForSymmetryMover > protocols::simple_moves::symmetry::ExtractAsymmetricUnitMoverOP

Definition at line 30 of file SetupForSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< FaSymDockingSlideTogether const > protocols::simple_moves::symmetry::FaSymDockingSlideTogetherCOP

Definition at line 107 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< FaSymDockingSlideTogether > protocols::simple_moves::symmetry::FaSymDockingSlideTogetherOP

Definition at line 105 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< OrderedSequentialSymmetrySlider const > protocols::simple_moves::symmetry::OrderedSequentialSymmetrySliderCOP

Definition at line 223 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< OrderedSequentialSymmetrySlider > protocols::simple_moves::symmetry::OrderedSequentialSymmetrySliderOP

Definition at line 221 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< RandomSymmetrySlider const > protocols::simple_moves::symmetry::RandomSymmetrySliderCOP

Definition at line 249 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< RandomSymmetrySlider > protocols::simple_moves::symmetry::RandomSymmetrySliderOP

Definition at line 247 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< SequentialSymmetrySlider const > protocols::simple_moves::symmetry::SequentialSymmetrySliderCOP

Definition at line 199 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< SequentialSymmetrySlider > protocols::simple_moves::symmetry::SequentialSymmetrySliderOP

Definition at line 197 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< SetupForSymmetryMover const > protocols::simple_moves::symmetry::SetupForSymmetryMoverCOP

Definition at line 28 of file SetupForSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< SetupForSymmetryMover > protocols::simple_moves::symmetry::SetupForSymmetryMoverOP

Definition at line 26 of file SetupForSymmetryMover.fwd.hh.

typedef utility::pointer::owning_ptr< SetupNCSMover const > protocols::simple_moves::symmetry::SetupNCSMoverCOP

Definition at line 25 of file SetupNCSMover.fwd.hh.

typedef utility::pointer::owning_ptr< SetupNCSMover > protocols::simple_moves::symmetry::SetupNCSMoverOP

Definition at line 23 of file SetupNCSMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymDockingInitialPerturbation const > protocols::simple_moves::symmetry::SymDockingInitialPerturbationCOP

Definition at line 48 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< SymDockingInitialPerturbation > protocols::simple_moves::symmetry::SymDockingInitialPerturbationOP

Definition at line 46 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< SymEnergyCutRotamerTrialsMover const > protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMoverCOP

Definition at line 28 of file SymRotamerTrialsMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymEnergyCutRotamerTrialsMover > protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMoverOP

Definition at line 26 of file SymRotamerTrialsMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockRbTrialMover const > protocols::simple_moves::symmetry::SymFoldandDockRbTrialMoverCOP

Definition at line 28 of file AsymFoldandDockRbTrialMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockRbTrialMover > protocols::simple_moves::symmetry::SymFoldandDockRbTrialMoverOP

Definition at line 26 of file AsymFoldandDockRbTrialMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymmetricRMSMover const > protocols::simple_moves::symmetry::SymmetricRMSMoverCOP

Definition at line 28 of file SymmetricRMSMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymmetricRMSMover > protocols::simple_moves::symmetry::SymmetricRMSMoverOP

Definition at line 26 of file SymmetricRMSMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymmetrySlider const > protocols::simple_moves::symmetry::SymmetrySliderCOP

Definition at line 136 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< SymmetrySlider > protocols::simple_moves::symmetry::SymmetrySliderOP

Definition at line 134 of file SymDockingInitialPerturbation.hh.

typedef utility::pointer::owning_ptr< SymMinMover const > protocols::simple_moves::symmetry::SymMinMoverCOP

Definition at line 26 of file SymMinMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymMinMover > protocols::simple_moves::symmetry::SymMinMoverOP

Definition at line 24 of file SymMinMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymPackRotamersMover const > protocols::simple_moves::symmetry::SymPackRotamersMoverCOP

Definition at line 24 of file SymPackRotamersMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymPackRotamersMover > protocols::simple_moves::symmetry::SymPackRotamersMoverOP

Definition at line 22 of file SymPackRotamersMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymRotamerTrialsMover const > protocols::simple_moves::symmetry::SymRotamerTrialsMoverCOP

Definition at line 24 of file SymRotamerTrialsMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymRotamerTrialsMover > protocols::simple_moves::symmetry::SymRotamerTrialsMoverOP

Definition at line 22 of file SymRotamerTrialsMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymShakeStructureMover const > protocols::simple_moves::symmetry::SymShakeStructureMoverCOP

Definition at line 29 of file SymShakeStructureMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymShakeStructureMover > protocols::simple_moves::symmetry::SymShakeStructureMoverOP

Definition at line 27 of file SymShakeStructureMover.fwd.hh.

Function Documentation

static numeric::random::RandomGenerator protocols::simple_moves::symmetry::RG ( 4227034  )

static

Referenced by protocols::simple_moves::symmetry::SequentialSymmetrySlider::init().

static basic::Tracer protocols::simple_moves::symmetry::TR ( "protocols.simple_moves.symmetry.DetectSymmetry"  )

static

Referenced by protocols::simple_moves::symmetry::DetectSymmetry::apply(), protocols::simple_moves::symmetry::SymDockingInitialPerturbation::apply(), protocols::simple_moves::symmetry::SymDockingSlideIntoContact::apply(), protocols::simple_moves::symmetry::SymmetrySlider::continue_slide(), protocols::simple_moves::symmetry::SequentialSymmetrySlider::select_jump(), protocols::simple_moves::symmetry::SymmetrySlider::set_current_jump(), protocols::simple_moves::symmetry::SymmetrySlider::setup(), protocols::simple_moves::symmetry::SymmetrySlider::slide(), protocols::simple_moves::symmetry::SymmetrySlider::slide_away(), and protocols::simple_moves::symmetry::SymmetrySlider::very_far_away().

static basic::Tracer protocols::simple_moves::symmetry::TR ( "protocols.simple_moves.symmetry.SymmetricRMSMover"  )

static

static basic::Tracer protocols::simple_moves::symmetry::TR ( "protocols.simple_moves.symmetry.SetupForSymmetryMover"  )

static

static basic::Tracer protocols::simple_moves::symmetry::TZ ( "protocols.simple_moves.symmetry.SetupNCSMover"  )

static

Referenced by protocols::simple_moves::symmetry::SetupNCSMover::apply(), and protocols::simple_moves::symmetry::SetupNCSMover::parse_my_tag().