#include <Cluster.hh>

Inheritance diagram for protocols::toolbox::ClusterPhilStyle:

Collaboration diagram for protocols::toolbox::ClusterPhilStyle:

Public Member Functions
	ClusterPhilStyle (core::Size dim, core::Real rad=1.0)

void	compute ()

void	do_clustering ()

void	set_radius (core::Real setting)

void	set_n_max_cluster (core::Size setting)

Public Member Functions inherited from protocols::toolbox::ClusterBase
	ClusterBase (core::Size dim)

core::Real	dist (core::Size i, core::Size j) const

core::Real &	dist (core::Size i, core::Size j)

ObjexxFCL::FArray2D< core::Real > &	distance_matrix ()

ObjexxFCL::FArray2D < core::Real > const &	distance_matrix () const

core::Size	dim () const

void	print_cluster_assignment (std::ostream &out) const

core::Size	size () const

Cluster const &	cluster (core::Size i) const

ClusterList const &	clusterlist () const

void	sort_each_group_by_energy (utility::vector1< core::Real > all_energies, bool keep_center=false)

void	limit_groupsize (core::Size limit)

void	print_summary (utility::vector1< std::string > tags, utility::vector1< core::Real > all_energies)

void	show (std::ostream &out) const

void	read (std::istream &in)

Additional Inherited Members
Public Types inherited from protocols::toolbox::ClusterBase
typedef std::deque< core::Size >	Cluster

typedef utility::vector1< Cluster >	ClusterList

typedef Cluster::const_iterator	IntraClusterIterator

typedef ClusterList::const_iterator	ClusterIterator

Protected Attributes inherited from protocols::toolbox::ClusterBase
ClusterList	clusterlist_

ObjexxFCL::FArray2D< core::Real >	distance_

core::Size	dim_