protocols::flxbb::DesignTask_Layer Class Reference

#include <DesignTask.hh>

Inheritance diagram for protocols::flxbb::DesignTask_Layer:

Collaboration diagram for protocols::flxbb::DesignTask_Layer:

Public Types
typedef core::pose::Pose	Pose
typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP
typedef core::pack::task::PackerTaskOP	PackerTaskOP
typedef protocols::flxbb::FilterStructsOP	FilterStructsOP
Public Types inherited from protocols::flxbb::DesignTask
typedef std::string	String
typedef core::Size	Size
typedef core::pose::Pose	Pose
typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP
typedef core::pack::task::PackerTaskOP	PackerTaskOP
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef protocols::moves::MoverOP	MoverOP
typedef protocols::flxbb::FilterStructsOP	FilterStructsOP
typedef core::chemical::AA	AA

Public Member Functions
	DesignTask_Layer ()
	default constructor More...
	DesignTask_Layer (bool dsgn_core, bool dsgn_boundary, bool dsgn_surface, bool use_original_seq, Size ncycle, ScoreFunctionOP sfxn, MoverOP mover, FilterStructsOP filter_structs=0)
	value constructor More...
virtual	~DesignTask_Layer ()
	destructor More...
virtual void	setup (Pose const &pose, PackerTaskOP const task)
	setup PackerTask More...
Public Member Functions inherited from protocols::flxbb::DesignTask
	DesignTask ()
	default constructor More...
	DesignTask (Size const ncycle, ScoreFunctionOP const sfxn, MoverOP const mover, FilterStructsOP const filter_structs=0, PackerTaskOP const taskf=0, String const &resfile="")
	value constructor More...
	DesignTask (DesignTask const &rval)
	copy constructor More...
virtual	~DesignTask ()
	destructor More...
Size	ncycle () const
	the number of cycles of fixbb design and mover More...
ScoreFunctionOP	scorefxn () const
	scorefxn for fixbb design More...
MoverOP	mover () const
	mover after fixbb design More...
FilterStructsOP	filter_structs () const
	filter during fixbb design More...
PackerTaskOP	packertask () const
	packer task for fixbb design More...
String	resfile () const
	resfile More...
void	set_ncycle (Size const &ncycle)
	the number of cycles of design and mover More...
void	set_scorefxn (ScoreFunctionOP const sfxn)
	scorefxn for fixbb design More...
void	set_mover (MoverOP const value)
	mover after fixbb design More...
void	set_filter_structs (FilterStructsOP const value)
	filter during fixbb design More...
void	set_packertask (PackerTaskOP const taskf)
	packer task More...
void	set_resfile (String const &resfile)
	set resfile More...
void	add_task_operations (utility::vector1< TaskOperationOP > const top)
	add task operations More...
void	add_task_operation (TaskOperationOP const top)
	add task operation More...
void	dump_packertask (std::ostream &os)
	output packertask More...

Private Attributes
bool	dsgn_core_
bool	dsgn_boundary_
bool	dsgn_surface_
bool	use_original_seq_

Additional Inherited Members
Protected Attributes inherited from protocols::flxbb::DesignTask
utility::vector1< TaskOperationOP >	task_operations_
	task operations More...

Detailed Description

Definition at line 197 of file DesignTask.hh.

Member Typedef Documentation

typedef protocols::flxbb::FilterStructsOP protocols::flxbb::DesignTask_Layer::FilterStructsOP

Definition at line 203 of file DesignTask.hh.

typedef core::pack::task::PackerTaskOP protocols::flxbb::DesignTask_Layer::PackerTaskOP

Definition at line 202 of file DesignTask.hh.

typedef core::pose::Pose protocols::flxbb::DesignTask_Layer::Pose

Definition at line 200 of file DesignTask.hh.

typedef core::scoring::ScoreFunctionOP protocols::flxbb::DesignTask_Layer::ScoreFunctionOP

Definition at line 201 of file DesignTask.hh.

Constructor & Destructor Documentation

protocols::flxbb::DesignTask_Layer::DesignTask_Layer

(

)

default constructor

Definition at line 203 of file DesignTask.cc.

protocols::flxbb::DesignTask_Layer::DesignTask_Layer	(	bool	dsgn_core,
		bool	dsgn_boundary,
		bool	dsgn_surface,
		bool	use_original_seq,
		Size	ncycle,
		ScoreFunctionOP	sfxn,
		MoverOP	mover,
		FilterStructsOP	filter_structs = 0
	)

value constructor

Definition at line 206 of file DesignTask.cc.

protocols::flxbb::DesignTask_Layer::~DesignTask_Layer ( )

virtual

destructor

Definition at line 224 of file DesignTask.cc.

Member Function Documentation

void protocols::flxbb::DesignTask_Layer::setup ( pose::Pose const &  pose, PackerTaskOP const  task  )

virtual

setup PackerTask

Implements protocols::flxbb::DesignTask.

Definition at line 227 of file DesignTask.cc.

References core::pack::task::operation::InitializeFromCommandline::apply(), dsgn_boundary_, dsgn_core_, dsgn_surface_, protocols::flxbb::DesignTask::resfile(), protocols::flxbb::DesignTask::set_packertask(), protocols::flxbb::DesignTask::task_operations_, protocols::TR(), and use_original_seq_.

Member Data Documentation

bool protocols::flxbb::DesignTask_Layer::dsgn_boundary_

private

Definition at line 224 of file DesignTask.hh.

Referenced by setup().

bool protocols::flxbb::DesignTask_Layer::dsgn_core_

private

Definition at line 224 of file DesignTask.hh.

Referenced by setup().

bool protocols::flxbb::DesignTask_Layer::dsgn_surface_

private

Definition at line 224 of file DesignTask.hh.

Referenced by setup().

bool protocols::flxbb::DesignTask_Layer::use_original_seq_

private

Definition at line 225 of file DesignTask.hh.

Referenced by setup().

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The documentation for this class was generated from the following files:

• src/protocols/flxbb/DesignTask.hh
• src/protocols/flxbb/DesignTask.cc