#include <HSSTriplet.hh>

Inheritance diagram for protocols::fldsgn::topology::HSSTriplet:

Collaboration diagram for protocols::fldsgn::topology::HSSTriplet:

Public Types
typedef core::Size	Size

typedef core::Real	Real

typedef std::string	String

typedef core::Vector	Vector

typedef protocols::fldsgn::topology::SS_Info2_COP	SS_Info2_COP

Public Member Functions
	HSSTriplet ()
	default constructor More...

	HSSTriplet (Size const h, Size const s1, Size const s2)
	value constructor More...

	HSSTriplet (String const &hss)
	value constructor More...

virtual	~HSSTriplet ()
	default destructor More...

	HSSTriplet (HSSTriplet const &hss)
	copy constructor More...

bool	operator== (HSSTriplet const &rval) const
	operator == More...

Size	helix () const

Size	strand1 () const

Size	strand2 () const

Real	hsheet_dist () const
	reutrn distance between sheet ( defined by the 2 strands ) and helix More...

Real	hs_angle () const
	return distance between sheet ( defined by the 2 strands ) and helix More...

Real	hs1_dist () const
	distance between mid helix and midpoint of 1st strand More...

Real	hs2_dist () const
	distance between mid helix and midpoint of 2nd strand More...

Real	ss_dist () const
	distance between midpoints of strands More...

String	ss_orient () const
	orientation between strands More...

String	hs1_orient () const
	orientation between helix and 1st strand More...

String	hs2_orient () const
	orientation between helix and 2nd strand More...

bool	left_handed () const
	hsstriplet is left handed or not More...

bool	geometry_is_initialized () const
	geometry is initialized or not More...

void	calc_geometry (SS_Info2_COP const ssinfo)
	calc geometry More...

Private Attributes
Size	helix_
	helix of hsstriplet More...

Size	strand1_
	1st strand of hsstriplet More...

Size	strand2_
	2nd strand of hsstriplet More...

Real	hsheet_dist_
	distance between sheet ( defined by the 2 strands ) and helix More...

Real	hs_angle_
	distance between sheet ( defined by the 2 strands ) and helix More...

Real	hs1_dist_
	distance between mid helix and midpoint of strand1 More...

Real	hs2_dist_
	distance between mid helix and midpoint of strand2 More...

Real	ss_dist_
	distance between midpoints of strands More...

String	ss_orient_
	orientation between strands More...

String	hs1_orient_
	orientation between helix and 1st strand More...

String	hs2_orient_
	orientation between helix and 2nd strand More...

bool	left_handed_
	hsstriplet is left-handed or not More...

bool	geometry_is_initialized_
	geometry is initialized More...

Friends
std::ostream &	operator<< (std::ostream &out, const HSSTriplet &s)
	IO Operator. More...

Detailed Description

Definition at line 32 of file HSSTriplet.hh.

Member Typedef Documentation

typedef core::Real protocols::fldsgn::topology::HSSTriplet::Real

Definition at line 37 of file HSSTriplet.hh.

typedef core::Size protocols::fldsgn::topology::HSSTriplet::Size

Definition at line 36 of file HSSTriplet.hh.

typedef protocols::fldsgn::topology::SS_Info2_COP protocols::fldsgn::topology::HSSTriplet::SS_Info2_COP

Definition at line 41 of file HSSTriplet.hh.

typedef std::string protocols::fldsgn::topology::HSSTriplet::String

Definition at line 38 of file HSSTriplet.hh.

typedef core::Vector protocols::fldsgn::topology::HSSTriplet::Vector

Definition at line 39 of file HSSTriplet.hh.

Constructor & Destructor Documentation

protocols::fldsgn::topology::HSSTriplet::HSSTriplet ( )

inline

default constructor

Definition at line 46 of file HSSTriplet.hh.

protocols::fldsgn::topology::HSSTriplet::HSSTriplet	(	Size const	h,
		Size const	s1,
		Size const	s2
	)

inline

value constructor

Definition at line 63 of file HSSTriplet.hh.

protocols::fldsgn::topology::HSSTriplet::HSSTriplet ( String const & hss)

value constructor

constructor

Definition at line 40 of file HSSTriplet.cc.

References helix_, strand1_, and strand2_.

protocols::fldsgn::topology::HSSTriplet::~HSSTriplet ( )

virtual

default destructor

Definition at line 36 of file HSSTriplet.cc.

protocols::fldsgn::topology::HSSTriplet::HSSTriplet ( HSSTriplet const & hss)

copy constructor

constructor

Definition at line 54 of file HSSTriplet.cc.

Member Function Documentation

void protocols::fldsgn::topology::HSSTriplet::calc_geometry ( SS_Info2_COP const ssinfo)

calc geometry

Definition at line 133 of file HSSTriplet.cc.

References geometry_is_initialized_, protocols::antibody2::h1, protocols::antibody2::h2, helix(), hs1_dist_, hs1_orient_, hs2_dist_, hs2_orient_, hs_angle_, hsheet_dist_, left_handed_, protocols::fldsgn::topology::SS_Base::orient(), ss_dist_, ss_orient_, strand1(), and strand2().

Referenced by protocols::fldsgn::topology::BetaAlphaBetaMotif::calc_geometry().

bool protocols::fldsgn::topology::HSSTriplet::geometry_is_initialized ( ) const

inline

geometry is initialized or not

Definition at line 161 of file HSSTriplet.hh.

References geometry_is_initialized_.

Size protocols::fldsgn::topology::HSSTriplet::helix ( ) const

inline

Definition at line 111 of file HSSTriplet.hh.

References helix_.

Referenced by calc_geometry(), and protocols::fldsgn::topology::operator<<().

core::Real protocols::fldsgn::topology::HSSTriplet::hs1_dist ( ) const

distance between mid helix and midpoint of 1st strand

Definition at line 70 of file HSSTriplet.cc.

References hs1_dist_.

std::string protocols::fldsgn::topology::HSSTriplet::hs1_orient ( ) const

orientation between helix and 1st strand

Definition at line 112 of file HSSTriplet.cc.

References hs1_orient_.

core::Real protocols::fldsgn::topology::HSSTriplet::hs2_dist ( ) const

distance between mid helix and midpoint of 2nd strand

Definition at line 77 of file HSSTriplet.cc.

References hs2_dist_.

std::string protocols::fldsgn::topology::HSSTriplet::hs2_orient ( ) const

orientation between helix and 2nd strand

Definition at line 119 of file HSSTriplet.cc.

References hs2_orient_.

core::Real protocols::fldsgn::topology::HSSTriplet::hs_angle ( ) const

return distance between sheet ( defined by the 2 strands ) and helix

Definition at line 98 of file HSSTriplet.cc.

References hs_angle_.

core::Real protocols::fldsgn::topology::HSSTriplet::hsheet_dist ( ) const

reutrn distance between sheet ( defined by the 2 strands ) and helix

Definition at line 91 of file HSSTriplet.cc.

References hsheet_dist_.

bool protocols::fldsgn::topology::HSSTriplet::left_handed ( ) const

hsstriplet is left handed or not

orientation between helix and 2nd strand

Definition at line 126 of file HSSTriplet.cc.

References left_handed_.

Referenced by protocols::fldsgn::topology::BetaAlphaBetaMotif::calc_geometry().

bool protocols::fldsgn::topology::HSSTriplet::operator== ( HSSTriplet const & rval) const

inline

operator ==

Definition at line 95 of file HSSTriplet.hh.

References helix_, strand1_, and strand2_.

core::Real protocols::fldsgn::topology::HSSTriplet::ss_dist ( ) const

distance between midpoints of strands

Definition at line 84 of file HSSTriplet.cc.

References ss_dist_.

std::string protocols::fldsgn::topology::HSSTriplet::ss_orient ( ) const

orientation between strands

Definition at line 105 of file HSSTriplet.cc.

References ss_orient_.

Size protocols::fldsgn::topology::HSSTriplet::strand1 ( ) const

inline

Definition at line 117 of file HSSTriplet.hh.

References strand1_.

Referenced by calc_geometry(), and protocols::fldsgn::topology::operator<<().

Size protocols::fldsgn::topology::HSSTriplet::strand2 ( ) const

inline

Definition at line 123 of file HSSTriplet.hh.

References strand2_.

Referenced by calc_geometry(), and protocols::fldsgn::topology::operator<<().

Friends And Related Function Documentation

std::ostream& operator<<	(	std::ostream &	out,
		const HSSTriplet &	s
	)

friend

IO Operator.

Definition at line 62 of file HSSTriplet.cc.

Member Data Documentation

bool protocols::fldsgn::topology::HSSTriplet::geometry_is_initialized_

private

geometry is initialized

Definition at line 213 of file HSSTriplet.hh.

Referenced by calc_geometry(), and geometry_is_initialized().

Size protocols::fldsgn::topology::HSSTriplet::helix_

private

helix of hsstriplet

Definition at line 177 of file HSSTriplet.hh.

Referenced by helix(), HSSTriplet(), and operator==().

Real protocols::fldsgn::topology::HSSTriplet::hs1_dist_

private

distance between mid helix and midpoint of strand1

Definition at line 192 of file HSSTriplet.hh.

Referenced by calc_geometry(), and hs1_dist().

String protocols::fldsgn::topology::HSSTriplet::hs1_orient_

private

orientation between helix and 1st strand

Definition at line 204 of file HSSTriplet.hh.

Referenced by calc_geometry(), and hs1_orient().

Real protocols::fldsgn::topology::HSSTriplet::hs2_dist_

private

distance between mid helix and midpoint of strand2

Definition at line 195 of file HSSTriplet.hh.

Referenced by calc_geometry(), and hs2_dist().

String protocols::fldsgn::topology::HSSTriplet::hs2_orient_

private

orientation between helix and 2nd strand

Definition at line 207 of file HSSTriplet.hh.

Referenced by calc_geometry(), and hs2_orient().

Real protocols::fldsgn::topology::HSSTriplet::hs_angle_

private

distance between sheet ( defined by the 2 strands ) and helix

Definition at line 189 of file HSSTriplet.hh.

Referenced by calc_geometry(), and hs_angle().

Real protocols::fldsgn::topology::HSSTriplet::hsheet_dist_

private

distance between sheet ( defined by the 2 strands ) and helix

Definition at line 186 of file HSSTriplet.hh.

Referenced by calc_geometry(), and hsheet_dist().

bool protocols::fldsgn::topology::HSSTriplet::left_handed_

private

hsstriplet is left-handed or not

Definition at line 210 of file HSSTriplet.hh.

Referenced by calc_geometry(), and left_handed().

Real protocols::fldsgn::topology::HSSTriplet::ss_dist_

private

distance between midpoints of strands

Definition at line 198 of file HSSTriplet.hh.

Referenced by calc_geometry(), and ss_dist().

String protocols::fldsgn::topology::HSSTriplet::ss_orient_

private

orientation between strands

Definition at line 201 of file HSSTriplet.hh.

Referenced by calc_geometry(), and ss_orient().

Size protocols::fldsgn::topology::HSSTriplet::strand1_

private

1st strand of hsstriplet

Definition at line 180 of file HSSTriplet.hh.

Referenced by HSSTriplet(), operator==(), and strand1().

Size protocols::fldsgn::topology::HSSTriplet::strand2_

private

2nd strand of hsstriplet

Definition at line 183 of file HSSTriplet.hh.

Referenced by HSSTriplet(), operator==(), and strand2().

The documentation for this class was generated from the following files:

src/protocols/fldsgn/topology/HSSTriplet.hh
src/protocols/fldsgn/topology/HSSTriplet.cc

Public Types

Public Member Functions

Private Attributes

Friends

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation