protocols::protein_interface_design::filters::DesignableResiduesFilter Class Reference

#include <DesignableResiduesFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::DesignableResiduesFilter:

Collaboration diagram for protocols::protein_interface_design::filters::DesignableResiduesFilter:

Public Member Functions
	DesignableResiduesFilter ()
	default ctor More...
virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
virtual void	report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
core::Size	compute (core::pose::Pose const &pose) const
virtual	~DesignableResiduesFilter ()
core::pack::task::TaskFactoryOP	task_factory () const
void	task_factory (core::pack::task::TaskFactoryOP task_factory)
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
core::Size	lower_threshold () const
core::Size	upper_threshold () const
bool	packable () const
bool	designable () const
void	lower_threshold (core::Size const l)
void	upper_threshold (core::Size const u)
void	packable (bool const p)
void	designable (bool const d)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_
core::Size	lower_threshold_
core::Size	upper_threshold_
bool	packable_
bool	designable_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 35 of file DesignableResiduesFilter.hh.

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::DesignableResiduesFilter::parent

private

Definition at line 39 of file DesignableResiduesFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::DesignableResiduesFilter::DesignableResiduesFilter

(

)

default ctor

Definition at line 43 of file DesignableResiduesFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::DesignableResiduesFilter::~DesignableResiduesFilter ( )

virtual

Definition at line 212 of file DesignableResiduesFilter.cc.

Member Function Documentation

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::apply ( core::pose::Pose const &  pose) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

Definition at line 105 of file DesignableResiduesFilter.cc.

References compute(), lower_threshold_, protocols::protein_interface_design::filters::TR(), and upper_threshold_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::DesignableResiduesFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 215 of file DesignableResiduesFilter.cc.

References DesignableResiduesFilter().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::compute

(

core::pose::Pose const &

pose)

const

Definition at line 119 of file DesignableResiduesFilter.cc.

References designable(), core::pose::symmetry::is_symmetric(), core::conformation::Residue::name3(), packable(), core::pose::Pose::pdb_info(), core::pose::Pose::residue(), core::pose::symmetry::symmetry_info(), task_factory(), core::pose::Pose::total_residue(), and protocols::protein_interface_design::filters::TR().

Referenced by apply(), report(), and report_sm().

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::designable

(

)

const

Definition at line 68 of file DesignableResiduesFilter.cc.

References designable_.

Referenced by compute(), parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::designable

(

bool const

d)

Definition at line 83 of file DesignableResiduesFilter.cc.

References designable_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::DesignableResiduesFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 208 of file DesignableResiduesFilter.cc.

References DesignableResiduesFilter().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold

(

)

const

Definition at line 53 of file DesignableResiduesFilter.cc.

References lower_threshold_.

Referenced by parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold

(

core::Size const

l)

Definition at line 73 of file DesignableResiduesFilter.cc.

References lower_threshold_.

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::packable

(

)

const

Definition at line 63 of file DesignableResiduesFilter.cc.

References packable_.

Referenced by compute(), parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::packable

(

bool const

p)

Definition at line 88 of file DesignableResiduesFilter.cc.

References packable_.

void protocols::protein_interface_design::filters::DesignableResiduesFilter::parse_def ( utility::lua::LuaObject const &  def, utility::lua::LuaObject const &  score_fxns, utility::lua::LuaObject const &  tasks  )

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 194 of file DesignableResiduesFilter.cc.

References designable(), lower_threshold(), packable(), protocols::elscripts::parse_taskdef(), task_factory(), protocols::protein_interface_design::filters::TR(), and upper_threshold().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  data, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 179 of file DesignableResiduesFilter.cc.

References designable(), lower_threshold(), packable(), protocols::rosetta_scripts::parse_task_operations(), task_factory(), protocols::protein_interface_design::filters::TR(), and upper_threshold().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 173 of file DesignableResiduesFilter.cc.

References compute().

core::Real protocols::protein_interface_design::filters::DesignableResiduesFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 166 of file DesignableResiduesFilter.cc.

References compute().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory

(

)

const

Definition at line 93 of file DesignableResiduesFilter.cc.

References task_factory_.

Referenced by compute(), parse_def(), parse_my_tag(), and task_factory().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory

(

core::pack::task::TaskFactoryOP

task_factory)

Definition at line 99 of file DesignableResiduesFilter.cc.

References task_factory(), and task_factory_.

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold

(

)

const

Definition at line 58 of file DesignableResiduesFilter.cc.

References upper_threshold_.

Referenced by parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold

(

core::Size const

u)

Definition at line 78 of file DesignableResiduesFilter.cc.

References upper_threshold_.

Member Data Documentation

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::designable_

private

Definition at line 72 of file DesignableResiduesFilter.hh.

Referenced by designable().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold_

private

Definition at line 71 of file DesignableResiduesFilter.hh.

Referenced by apply(), and lower_threshold().

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::packable_

private

Definition at line 72 of file DesignableResiduesFilter.hh.

Referenced by packable().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory_

private

Definition at line 70 of file DesignableResiduesFilter.hh.

Referenced by task_factory().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold_

private

Definition at line 71 of file DesignableResiduesFilter.hh.

Referenced by apply(), and upper_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/DesignableResiduesFilter.hh
• src/protocols/protein_interface_design/filters/DesignableResiduesFilter.cc