Rigid-body segments in a protein. More...

#include <RBSegment.hh>

Collaboration diagram for protocols::rbsegment_relax::RBSegment:

Public Member Functions
	RBSegment ()

	RBSegment (int seg_begin, int seg_end, RBSegmentType seg_type)
	construct a simple RB Segment More...

	RBSegment (RBResidueRange const &range_in)
	construct a simple RBSegment from an RB residue range More...

	RBSegment (int seg_begin, int seg_end, char type)
	construct a simple RB Segment More...

	RBSegment (utility::vector1< RBSegment > const &segs_in)
	construct a compound RBSegment from a vector of simple RBSegments More...

void	set_movement (core::Real sigAxisR, core::Real sigAxisT, core::Real sigOffAxisR=0.0, core::Real sigOffAxisT=0.0)

void	get_movement (core::Real &sigAxisR, core::Real &sigAxisT, core::Real &sigOffAxisR, core::Real &sigOffAxisT) const

RBSegment	remap (core::id::SequenceMapping const &mapping) const

core::Size	nContinuousSegments () const

bool	isEmpty () const

bool	isSimple () const

bool	isHelix () const

bool	isSheet () const

bool	isGenericRB () const

bool	isCompound () const

bool	initialized () const

core::Real	getSigAxisR () const

core::Real	getSigAxisT () const

core::Real	getSigOffAxisR () const

core::Real	getSigOffAxisT () const

RBResidueRange &	operator[] (int i)

RBResidueRange const &	operator[] (int i) const

Private Attributes
utility::vector1< RBResidueRange >	segments_

core::Real	sigAxisR_

core::Real	sigAxisT_

core::Real	sigOffAxisR_

core::Real	sigOffAxisT_

Detailed Description

Rigid-body segments in a protein.

Definition at line 68 of file RBSegment.hh.

Constructor & Destructor Documentation

protocols::rbsegment_relax::RBSegment::RBSegment ( )

inline

Definition at line 70 of file RBSegment.hh.

References sigAxisR_, sigAxisT_, sigOffAxisR_, and sigOffAxisT_.

protocols::rbsegment_relax::RBSegment::RBSegment	(	int	seg_begin,
		int	seg_end,
		RBSegmentType	seg_type
	)

inline

construct a simple RB Segment

Definition at line 75 of file RBSegment.hh.

References segments_, sigAxisR_, sigAxisT_, sigOffAxisR_, and sigOffAxisT_.

protocols::rbsegment_relax::RBSegment::RBSegment ( RBResidueRange const & range_in)

inline

construct a simple RBSegment from an RB residue range

Definition at line 81 of file RBSegment.hh.

References segments_, sigAxisR_, sigAxisT_, sigOffAxisR_, and sigOffAxisT_.

protocols::rbsegment_relax::RBSegment::RBSegment	(	int	seg_begin,
		int	seg_end,
		char	type
	)

inline

construct a simple RB Segment

Definition at line 87 of file RBSegment.hh.

References protocols::rbsegment_relax::RB_DEFAULT, protocols::rbsegment_relax::RB_HELIX, protocols::rbsegment_relax::RB_SHEET, segments_, sigAxisR_, sigAxisT_, sigOffAxisR_, and sigOffAxisT_.

protocols::rbsegment_relax::RBSegment::RBSegment ( utility::vector1< RBSegment > const & segs_in)

construct a compound RBSegment from a vector of simple RBSegments

Definition at line 411 of file RBSegment.cc.

References protocols::rbsegment_relax::TR_seg().

Member Function Documentation

void protocols::rbsegment_relax::RBSegment::get_movement	(	core::Real &	sigAxisR,
		core::Real &	sigAxisT,
		core::Real &	sigOffAxisR,
		core::Real &	sigOffAxisT
	)		const

Definition at line 88 of file RBSegment.cc.

Referenced by protocols::rbsegment_relax::RBSegmentMover::set_movement().

core::Real protocols::rbsegment_relax::RBSegment::getSigAxisR ( ) const

inline

Definition at line 119 of file RBSegment.hh.

References sigAxisR_.

core::Real protocols::rbsegment_relax::RBSegment::getSigAxisT ( ) const

inline

Definition at line 120 of file RBSegment.hh.

References sigAxisT_.

core::Real protocols::rbsegment_relax::RBSegment::getSigOffAxisR ( ) const

inline

Definition at line 121 of file RBSegment.hh.

References sigOffAxisR_.

core::Real protocols::rbsegment_relax::RBSegment::getSigOffAxisT ( ) const

inline

Definition at line 122 of file RBSegment.hh.

References sigOffAxisT_.

bool protocols::rbsegment_relax::RBSegment::initialized ( ) const

inline

Definition at line 116 of file RBSegment.hh.

References sigAxisR_, sigAxisT_, sigOffAxisR_, and sigOffAxisT_.

bool protocols::rbsegment_relax::RBSegment::isCompound ( ) const

inline

Definition at line 115 of file RBSegment.hh.

References nContinuousSegments().

bool protocols::rbsegment_relax::RBSegment::isEmpty ( ) const

inline

Definition at line 110 of file RBSegment.hh.

References nContinuousSegments().

Referenced by protocols::rbsegment_relax::RB_lt::operator()().

bool protocols::rbsegment_relax::RBSegment::isGenericRB ( ) const

inline

Definition at line 114 of file RBSegment.hh.

References isSimple(), protocols::rbsegment_relax::RB_DEFAULT, and segments_.

bool protocols::rbsegment_relax::RBSegment::isHelix ( ) const

inline

Definition at line 112 of file RBSegment.hh.

References isSimple(), protocols::rbsegment_relax::RB_HELIX, and segments_.

bool protocols::rbsegment_relax::RBSegment::isSheet ( ) const

inline

Definition at line 113 of file RBSegment.hh.

References isSimple(), protocols::rbsegment_relax::RB_SHEET, and segments_.

bool protocols::rbsegment_relax::RBSegment::isSimple ( ) const

inline

Definition at line 111 of file RBSegment.hh.

References nContinuousSegments().

Referenced by isGenericRB(), isHelix(), and isSheet().

core::Size protocols::rbsegment_relax::RBSegment::nContinuousSegments ( ) const

inline

Definition at line 108 of file RBSegment.hh.

References segments_.

Referenced by isCompound(), isEmpty(), isSimple(), and protocols::rbsegment_relax::RBSegmentMover::print().

RBResidueRange& protocols::rbsegment_relax::RBSegment::operator[] ( int i)

inline

Definition at line 124 of file RBSegment.hh.

References segments_.

RBResidueRange const& protocols::rbsegment_relax::RBSegment::operator[] ( int i) const

inline

Definition at line 125 of file RBSegment.hh.

References segments_.

RBSegment protocols::rbsegment_relax::RBSegment::remap ( core::id::SequenceMapping const & mapping) const

Definition at line 383 of file RBSegment.cc.

References core::sequence::end, protocols::loops::start, and protocols::rbsegment_relax::TR_seg().

Referenced by protocols::rbsegment_relax::remap_rb_segments().

void protocols::rbsegment_relax::RBSegment::set_movement	(	core::Real	sigAxisR,
		core::Real	sigAxisT,
		core::Real	sigOffAxisR = `0.0`,
		core::Real	sigOffAxisT = `0.0`
	)