Aligner.hh File Reference

class definition for a class that aligns two Sequence objects using an dynamic programming and an arbitrary scoring scheme. More...

#include <core/types.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/DP_Matrix.hh>
#include <core/sequence/Sequence.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <core/sequence/SequenceAlignment.fwd.hh>

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Classes
class	core::sequence::Aligner

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::sequence

Constant Groups
	core
	A class for defining atom parameters, known as atom_types.
	core::sequence

Detailed Description

class definition for a class that aligns two Sequence objects using an dynamic programming and an arbitrary scoring scheme.

Author

James Thompson

Definition in file Aligner.hh.