forge → core Relation

File in src/protocols/forge	Includes file in src/core
components / BDR.cc	chemical / AA.hh
components / BDR.cc	pose / annotated_sequence.hh
components / BDR.cc	pose / metrics / CalculatorFactory.hh
components / BDR.cc	scoring / dssp / Dssp.hh
components / BDR.cc	scoring / Energies.hh
components / BDR.cc	kinematics / FoldTree.hh
components / BDR.cc	pack / task / operation / NoRepackDisulfides.hh
components / BDR.cc	pack / task / PackerTask.hh
components / BDR.cc	pose / Pose.hh
components / BDR.cc	chemical / ResidueTypeSet.hh
components / BDR.cc	scoring / ScoreFunction.hh
components / BDR.cc	scoring / ScoreFunctionFactory.hh
components / BDR.cc	util / SwitchResidueTypeSet.hh
components / BDR.cc	pack / task / TaskFactory.hh
components / BDR.cc	pack / task / operation / TaskOperations.hh
components / BDR.hh	pose / Pose.fwd.hh
components / BDR.hh	scoring / ScoreFunction.fwd.hh
components / BDR.hh	pack / task / TaskFactory.fwd.hh
components / BDR.hh	types.hh
components / BDRSegmentInfo.hh	pose / annotated_sequence.hh
components / BDRSegmentInfo.hh	types.hh
build / Bridge.cc	pose / annotated_sequence.hh
build / Bridge.cc	conformation / signals / LengthEvent.hh
build / Bridge.cc	kinematics / MoveMap.hh
build / Bridge.cc	pose / Pose.hh
build / Bridge.cc	conformation / util.hh
build / BuildInstruction.cc	conformation / Conformation.hh
build / BuildInstruction.cc	scoring / Energies.hh
build / BuildInstruction.cc	conformation / signals / LengthEvent.hh
build / BuildInstruction.cc	pose / Pose.hh
build / BuildInstruction.cc	chemical / ResidueTypeSet.hh
build / BuildInstruction.hh	chemical / ChemicalManager.hh
build / BuildInstruction.hh	conformation / signals / LengthEvent.fwd.hh
build / BuildInstruction.hh	kinematics / MoveMap.fwd.hh
build / BuildInstruction.hh	pose / Pose.fwd.hh
build / BuildInstruction.hh	chemical / ResidueTypeSet.fwd.hh
build / BuildInstruction.hh	types.hh
build / BuildManager.cc	pose / annotated_sequence.hh
build / BuildManager.cc	kinematics / FoldTree.hh
build / BuildManager.cc	kinematics / MoveMap.hh
build / BuildManager.cc	pose / Pose.hh
build / BuildManager.cc	conformation / ResidueFactory.hh
build / BuildManager.cc	chemical / ResidueType.hh
build / BuildManager.cc	chemical / ResidueTypeSet.hh
build / BuildManager.cc	id / SequenceMapping.hh
build / BuildManager.cc	pose / util.hh
build / BuildManager.cc	conformation / util.hh
build / BuildManager.cc	chemical / VariantType.hh
build / BuildManager.hh	kinematics / MoveMap.fwd.hh
build / BuildManager.hh	pose / Pose.fwd.hh
build / BuildManager.hh	id / SequenceMapping.fwd.hh
build / BuildManager.hh	types.hh
methods / chainbreak_eval.cc	scoring / methods / ChainbreakEnergy.hh
methods / chainbreak_eval.cc	scoring / EnergyMap.hh
methods / chainbreak_eval.cc	kinematics / FoldTree.hh
methods / chainbreak_eval.cc	scoring / methods / LinearChainbreakEnergy.hh
methods / chainbreak_eval.cc	kinematics / MoveMap.hh
methods / chainbreak_eval.cc	pose / Pose.hh
methods / chainbreak_eval.cc	scoring / ScoreFunction.hh
methods / chainbreak_eval.cc	scoring / ScoreType.hh
methods / chainbreak_eval.hh	pose / Pose.fwd.hh
methods / chainbreak_eval.hh	types.hh
build / ConnectRight.cc	id / AtomID.hh
build / ConnectRight.cc	conformation / Conformation.hh
build / ConnectRight.cc	kinematics / FoldTree.hh
build / ConnectRight.cc	conformation / signals / LengthEvent.hh
build / ConnectRight.cc	kinematics / MoveMap.hh
build / ConnectRight.cc	pose / PDBInfo.hh
build / ConnectRight.cc	pose / util.hh
build / ConnectRight.hh	conformation / Conformation.fwd.hh
build / ConnectRight.hh	conformation / signals / LengthEvent.fwd.hh
build / ConnectRight.hh	id / NamedStubID.hh
build / ConnectRight.hh	pose / Pose.hh
build / ConnectRight.hh	kinematics / RT.hh
constraints / ConstraintFileRCG.cc	scoring / constraints / ConstraintIO.hh
constraints / ConstraintFileRCG.cc	scoring / constraints / ConstraintSet.hh
constraints / ConstraintFileRCG.cc	id / SequenceMapping.hh
constraints / ConstraintFileRCG.hh	scoring / constraints / Constraint.fwd.hh
constraints / ConstraintFileRCG.hh	pose / Pose.fwd.hh
constraints / ConstraintFileRCG.hh	types.hh
methods / fold_tree_functions.cc	conformation / Conformation.hh
methods / fold_tree_functions.cc	graph / DisjointSets.hh
methods / fold_tree_functions.cc	kinematics / Edge.hh
methods / fold_tree_functions.cc	kinematics / FoldTree.hh
methods / fold_tree_functions.cc	kinematics / MoveMap.hh
methods / fold_tree_functions.cc	pose / Pose.hh
methods / fold_tree_functions.cc	conformation / Residue.hh
methods / fold_tree_functions.cc	types.hh
methods / fold_tree_functions.cc	pose / util.hh
methods / fold_tree_functions.cc	chemical / VariantType.hh
methods / fold_tree_functions.hh	kinematics / Edge.hh
methods / fold_tree_functions.hh	kinematics / FoldTree.hh
methods / fold_tree_functions.hh	kinematics / MoveMap.fwd.hh
methods / fold_tree_functions.hh	pose / Pose.fwd.hh
methods / fold_tree_functions.hh	types.hh
methods / fragment_functions.cc	fragment / ConstantLengthFragSet.hh
methods / fragment_functions.cc	fragment / FrameIterator.hh
methods / fragment_functions.cc	fragment / FrameIteratorWorker_.hh
methods / fragment_functions.hh	fragment / ConstantLengthFragSet.fwd.hh
methods / fragment_functions.hh	fragment / FrameIterator.fwd.hh
methods / fragment_functions.hh	types.hh
build / GrowLeft.cc	pose / annotated_sequence.hh
build / GrowLeft.cc	conformation / Conformation.hh
build / GrowLeft.cc	conformation / signals / LengthEvent.hh
build / GrowLeft.cc	kinematics / MoveMap.hh
build / GrowLeft.cc	pose / Pose.hh
build / GrowLeft.cc	chemical / ResidueType.hh
build / GrowLeft.hh	conformation / signals / LengthEvent.fwd.hh
build / GrowLeft.hh	pose / Pose.fwd.hh
build / GrowRight.cc	pose / annotated_sequence.hh
build / GrowRight.cc	conformation / Conformation.hh
build / GrowRight.cc	conformation / signals / LengthEvent.hh
build / GrowRight.cc	kinematics / MoveMap.hh
build / GrowRight.cc	pose / Pose.hh
build / GrowRight.cc	chemical / ResidueType.hh
build / GrowRight.hh	conformation / signals / LengthEvent.fwd.hh
build / GrowRight.hh	pose / Pose.fwd.hh
build / Interval.hh	types.hh
constraints / InverseRotamersRCG.cc	scoring / constraints / AmbiguousConstraint.hh
constraints / InverseRotamersRCG.cc	scoring / constraints / BoundConstraint.hh
constraints / InverseRotamersRCG.cc	pose / Pose.hh
constraints / InverseRotamersRCG.cc	conformation / Residue.hh
constraints / InverseRotamersRCG.cc	id / SequenceMapping.hh
constraints / InverseRotamersRCG.hh	scoring / constraints / Func.fwd.hh
constraints / InverseRotamersRCG.hh	pose / Pose.fwd.hh
constraints / InverseRotamersRCG.hh	conformation / Residue.fwd.hh
constraints / InverseRotamersRCG.hh	types.hh
constraints / InvrotTreeRCG.cc	chemical / ChemicalManager.hh
constraints / InvrotTreeRCG.cc	scoring / constraints / Constraint.hh
constraints / InvrotTreeRCG.cc	pose / Pose.hh
constraints / InvrotTreeRCG.hh	pose / Pose.fwd.hh
constraints / InvrotTreeRCG.hh	types.hh
constraints / NtoC_RCG.cc	scoring / constraints / AtomPairConstraint.hh
constraints / NtoC_RCG.cc	scoring / constraints / BoundConstraint.hh
constraints / NtoC_RCG.cc	scoring / constraints / Constraint.hh
constraints / NtoC_RCG.cc	pose / Pose.hh
constraints / NtoC_RCG.cc	chemical / ResidueType.hh
constraints / NtoC_RCG.cc	scoring / constraints / ScalarWeightedFunc.hh
constraints / NtoC_RCG.cc	id / SequenceMapping.hh
constraints / NtoC_RCG.hh	pose / Pose.fwd.hh
constraints / NtoC_RCG.hh	types.hh
methods / pose_mod.cc	conformation / Conformation.hh
methods / pose_mod.cc	id / DOF_ID.hh
methods / pose_mod.cc	scoring / Energies.hh
methods / pose_mod.cc	kinematics / FoldTree.hh
methods / pose_mod.cc	pack / task / operation / OptCysHG.hh
methods / pose_mod.cc	pack / pack_rotamers.hh
methods / pose_mod.cc	pack / task / PackerTask.hh
methods / pose_mod.cc	scoring / ScoreFunction.hh
methods / pose_mod.cc	scoring / ScoreFunctionFactory.hh
methods / pose_mod.cc	pack / task / TaskFactory.hh
methods / pose_mod.cc	chemical / VariantType.hh
methods / pose_mod.hh	chemical / AA.hh
methods / pose_mod.hh	chemical / Adduct.fwd.hh
methods / pose_mod.hh	chemical / Adduct.hh
methods / pose_mod.hh	kinematics / tree / Atom.fwd.hh
methods / pose_mod.hh	conformation / Atom.fwd.hh
methods / pose_mod.hh	kinematics / tree / Atom.hh
methods / pose_mod.hh	conformation / Atom.hh
methods / pose_mod.hh	chemical / AtomICoor.fwd.hh
methods / pose_mod.hh	chemical / AtomICoor.hh
methods / pose_mod.hh	id / AtomID.fwd.hh
methods / pose_mod.hh	id / AtomID.hh
methods / pose_mod.hh	id / AtomID_Map.fwd.hh
methods / pose_mod.hh	id / AtomID_Map.hh
methods / pose_mod.hh	id / AtomID_Mask.fwd.hh
methods / pose_mod.hh	kinematics / AtomPointer.fwd.hh
methods / pose_mod.hh	kinematics / AtomTree.fwd.hh
methods / pose_mod.hh	kinematics / AtomTree.hh
methods / pose_mod.hh	chemical / AtomType.fwd.hh
methods / pose_mod.hh	chemical / AtomType.hh
methods / pose_mod.hh	chemical / AtomTypeSet.fwd.hh
methods / pose_mod.hh	kinematics / AtomWithDOFChange.fwd.hh
methods / pose_mod.hh	conformation / Conformation.fwd.hh
methods / pose_mod.hh	conformation / Conformation.hh
methods / pose_mod.hh	pose / signals / ConformationEvent.fwd.hh
methods / pose_mod.hh	conformation / signals / ConnectionEvent.fwd.hh
methods / pose_mod.hh	conformation / signals / ConnectionEvent.hh
methods / pose_mod.hh	scoring / constraints / Constraint.fwd.hh
methods / pose_mod.hh	scoring / constraints / ConstraintSet.fwd.hh
methods / pose_mod.hh	pose / signals / DestructionEvent.fwd.hh
methods / pose_mod.hh	id / DOF_ID.fwd.hh
methods / pose_mod.hh	id / DOF_ID.hh
methods / pose_mod.hh	id / DOF_ID_Map.fwd.hh
methods / pose_mod.hh	id / DOF_ID_Map.hh
methods / pose_mod.hh	id / DOF_ID_Mask.fwd.hh
methods / pose_mod.hh	kinematics / DomainMap.fwd.hh
methods / pose_mod.hh	kinematics / Edge.fwd.hh
methods / pose_mod.hh	kinematics / Edge.hh
methods / pose_mod.hh	chemical / ElementSet.fwd.hh
methods / pose_mod.hh	scoring / Energies.fwd.hh
methods / pose_mod.hh	pose / signals / EnergyEvent.fwd.hh
methods / pose_mod.hh	kinematics / FoldTree.fwd.hh
methods / pose_mod.hh	kinematics / FoldTree.hh
methods / pose_mod.hh	pose / signals / GeneralEvent.fwd.hh
methods / pose_mod.hh	conformation / signals / GeneralEvent.fwd.hh
methods / pose_mod.hh	conformation / signals / GeneralEvent.hh
methods / pose_mod.hh	chemical / orbitals / ICoorOrbitalData.hh
methods / pose_mod.hh	conformation / signals / IdentityEvent.fwd.hh
methods / pose_mod.hh	conformation / signals / IdentityEvent.hh
methods / pose_mod.hh	kinematics / Jump.fwd.hh
methods / pose_mod.hh	kinematics / Jump.hh
methods / pose_mod.hh	conformation / signals / LengthEvent.fwd.hh
methods / pose_mod.hh	conformation / signals / LengthEvent.hh
methods / pose_mod.hh	kinematics / MinimizerMapBase.fwd.hh
methods / pose_mod.hh	pose / MiniPose.fwd.hh
methods / pose_mod.hh	chemical / MMAtomType.fwd.hh
methods / pose_mod.hh	chemical / MMAtomTypeSet.fwd.hh
methods / pose_mod.hh	chemical / sdf / MolData.fwd.hh
methods / pose_mod.hh	chemical / sdf / MolData.hh
methods / pose_mod.hh	kinematics / MoveMap.fwd.hh
methods / pose_mod.hh	id / NamedAtomID.fwd.hh
methods / pose_mod.hh	id / NamedAtomID.hh
methods / pose_mod.hh	id / NamedStubID.fwd.hh
methods / pose_mod.hh	pose / datacache / ObserverCache.fwd.hh
methods / pose_mod.hh	chemical / orbitals / OrbitalType.fwd.hh
methods / pose_mod.hh	chemical / orbitals / OrbitalTypeSet.fwd.hh
methods / pose_mod.hh	conformation / orbitals / OrbitalXYZCoords.hh
methods / pose_mod.hh	pose / PDBInfo.fwd.hh
methods / pose_mod.hh	pose / Pose.fwd.hh
methods / pose_mod.hh	pose / Pose.hh
methods / pose_mod.hh	pose / metrics / PoseMetricContainer.fwd.hh
methods / pose_mod.hh	conformation / PseudoBond.fwd.hh
methods / pose_mod.hh	chemical / ResConnID.fwd.hh
methods / pose_mod.hh	chemical / ResConnID.hh
methods / pose_mod.hh	conformation / Residue.fwd.hh
methods / pose_mod.hh	conformation / Residue.hh
methods / pose_mod.hh	chemical / ResidueConnection.fwd.hh
methods / pose_mod.hh	chemical / ResidueConnection.hh
methods / pose_mod.hh	kinematics / ResidueCoordinateChangeList.fwd.hh
methods / pose_mod.hh	conformation / ResidueFactory.hh
methods / pose_mod.hh	chemical / ResidueType.fwd.hh
methods / pose_mod.hh	chemical / ResidueType.hh
methods / pose_mod.hh	chemical / ResidueTypeSet.fwd.hh
methods / pose_mod.hh	pack / dunbrack / RotamerLibrary.fwd.hh
methods / pose_mod.hh	kinematics / RT.fwd.hh
methods / pose_mod.hh	kinematics / RT.hh
methods / pose_mod.hh	scoring / ScoreFunction.fwd.hh
methods / pose_mod.hh	scoring / ScoreType.hh
methods / pose_mod.hh	id / SequenceMapping.fwd.hh
methods / pose_mod.hh	kinematics / Stub.fwd.hh
methods / pose_mod.hh	kinematics / Stub.hh
methods / pose_mod.hh	id / TorsionID.fwd.hh
methods / pose_mod.hh	id / types.hh
methods / pose_mod.hh	chemical / types.hh
methods / pose_mod.hh	types.hh
methods / pose_mod.hh	pose / util.hh
methods / pose_mod.hh	pose / util.tmpl.hh
methods / pose_mod.hh	chemical / VariantType.fwd.hh
methods / pose_mod.hh	conformation / signals / XYZEvent.fwd.hh
methods / pose_mod.hh	conformation / signals / XYZEvent.hh
build / RelativeConnectRight.cc	pose / Pose.hh
build / RelativeSequencePosition.hh	types.hh
remodel / RemodelAccumulator.cc	import_pose / import_pose.hh
remodel / RemodelAccumulator.cc	scoring / constraints / ResidueTypeLinkingConstraint.hh
remodel / RemodelAccumulator.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelAccumulator.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelAccumulator.hh	scoring / ScoreFunctionFactory.hh
remodel / RemodelConstraintGenerator.cc	scoring / constraints / Constraint.hh
remodel / RemodelConstraintGenerator.cc	pose / Pose.hh
remodel / RemodelConstraintGenerator.cc	id / SequenceMapping.hh
remodel / RemodelConstraintGenerator.hh	scoring / constraints / Constraint.fwd.hh
remodel / RemodelConstraintGenerator.hh	pose / Pose.fwd.hh
remodel / RemodelConstraintGenerator.hh	id / SequenceMapping.fwd.hh
remodel / RemodelData.cc	scoring / dssp / Dssp.hh
remodel / RemodelData.cc	import_pose / import_pose.hh
remodel / RemodelData.cc	pack / task / ResfileReader.fwd.hh
remodel / RemodelData.cc	pack / task / ResfileReader.hh
remodel / RemodelData.hh	chemical / AA.hh
remodel / RemodelData.hh	kinematics / MoveMap.hh
remodel / RemodelData.hh	pose / Pose.hh
remodel / RemodelDesignMover.cc	pose / metrics / CalculatorFactory.hh
remodel / RemodelDesignMover.cc	util / disulfide_util.hh
remodel / RemodelDesignMover.cc	scoring / disulfides / DisulfideMatchingPotential.hh
remodel / RemodelDesignMover.cc	kinematics / MoveMap.hh
remodel / RemodelDesignMover.cc	pack / pack_rotamers.hh
remodel / RemodelDesignMover.cc	pack / task / ResfileReader.hh
remodel / RemodelDesignMover.cc	conformation / Residue.hh
remodel / RemodelDesignMover.cc	pack / rotamer_set / RotamerLinks.hh
remodel / RemodelDesignMover.cc	scoring / ScoreFunction.hh
remodel / RemodelDesignMover.cc	pack / task / TaskFactory.hh
remodel / RemodelDesignMover.cc	conformation / util.hh
remodel / RemodelDesignMover.hh	kinematics / MoveMap.hh
remodel / RemodelDesignMover.hh	pose / Pose.fwd.hh
remodel / RemodelDesignMover.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelEnzdesCstModule.cc	chemical / ChemicalManager.hh
remodel / RemodelEnzdesCstModule.cc	scoring / constraints / Constraint.fwd.hh
remodel / RemodelEnzdesCstModule.cc	chemical / ResidueType.hh
remodel / RemodelEnzdesCstModule.cc	chemical / ResidueTypeSet.hh
remodel / RemodelEnzdesCstModule.cc	scoring / ScoreFunction.hh
remodel / RemodelEnzdesCstModule.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelEnzdesCstModule.hh	pose / Pose.fwd.hh
remodel / RemodelEnzdesCstModule.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelLoopMover.cc	util / ABEGOManager.hh
remodel / RemodelLoopMover.cc	chemical / AtomType.hh
remodel / RemodelLoopMover.cc	chemical / ChemicalManager.hh
remodel / RemodelLoopMover.cc	conformation / Conformation.hh
remodel / RemodelLoopMover.cc	scoring / Energies.hh
remodel / RemodelLoopMover.cc	io / pdb / file_data.hh
remodel / RemodelLoopMover.cc	kinematics / FoldTree.hh
remodel / RemodelLoopMover.cc	fragment / FragSet.hh
remodel / RemodelLoopMover.cc	pose / Pose.hh
remodel / RemodelLoopMover.cc	conformation / Residue.hh
remodel / RemodelLoopMover.cc	conformation / ResidueFactory.hh
remodel / RemodelLoopMover.cc	scoring / constraints / ResidueTypeLinkingConstraint.hh
remodel / RemodelLoopMover.cc	chemical / ResidueTypeSet.hh
remodel / RemodelLoopMover.cc	scoring / ScoreFunction.hh
remodel / RemodelLoopMover.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelLoopMover.cc	id / TorsionID.hh
remodel / RemodelLoopMover.cc	pose / symmetry / util.hh
remodel / RemodelLoopMover.cc	pose / util.hh
remodel / RemodelLoopMover.hh	fragment / FragSet.fwd.hh
remodel / RemodelLoopMover.hh	kinematics / MoveMap.hh
remodel / RemodelLoopMover.hh	pose / Pose.fwd.hh
remodel / RemodelLoopMover.hh	pose / Pose.hh
remodel / RemodelLoopMover.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelMover.cc	chemical / AA.hh
remodel / RemodelMover.cc	pose / annotated_sequence.hh
remodel / RemodelMover.cc	pose / datacache / CacheableObserverType.hh
remodel / RemodelMover.cc	pose / metrics / CalculatorFactory.hh
remodel / RemodelMover.cc	scoring / constraints / ConstraintSet.hh
remodel / RemodelMover.cc	scoring / dssp / Dssp.hh
remodel / RemodelMover.cc	scoring / Energies.hh
remodel / RemodelMover.cc	kinematics / FoldTree.hh
remodel / RemodelMover.cc	kinematics / MoveMap.hh
remodel / RemodelMover.cc	pack / task / operation / NoRepackDisulfides.hh
remodel / RemodelMover.cc	pose / datacache / ObserverCache.hh
remodel / RemodelMover.cc	pack / task / operation / OperateOnCertainResidues.hh
remodel / RemodelMover.cc	pack / task / PackerTask.hh
remodel / RemodelMover.cc	pose / PDBInfo.hh
remodel / RemodelMover.cc	pose / Pose.hh
remodel / RemodelMover.cc	pose / Remarks.hh
remodel / RemodelMover.cc	chemical / ResidueTypeSet.hh
remodel / RemodelMover.cc	pack / task / operation / ResLvlTaskOperations.hh
remodel / RemodelMover.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelMover.cc	util / SwitchResidueTypeSet.hh
remodel / RemodelMover.cc	pack / task / TaskFactory.hh
remodel / RemodelMover.cc	pack / task / operation / TaskOperations.hh
remodel / RemodelMover.cc	pose / util.hh
remodel / RemodelMover.hh	pose / Pose.fwd.hh
remodel / RemodelMover.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelMover.hh	pack / task / TaskFactory.fwd.hh
remodel / RemodelMover.hh	types.hh
remodel / RemodelRotamerLinks.cc	pack / task / PackerTask.hh
remodel / RemodelRotamerLinks.cc	pose / PDBInfo.hh
remodel / RemodelRotamerLinks.cc	pose / Pose.hh
remodel / RemodelRotamerLinks.cc	chemical / ResidueType.hh
remodel / RemodelRotamerLinks.cc	pack / rotamer_set / RotamerLinks.hh
remodel / RemodelRotamerLinks.hh	pack / task / operation / TaskOperation.hh
remodel / RemodelRotamerLinksCreator.hh	pack / task / operation / TaskOperationCreator.hh
remodel / RemodelWorkingSet.cc	fragment / ConstantLengthFragSet.fwd.hh
remodel / RemodelWorkingSet.cc	kinematics / FoldTree.hh
remodel / RemodelWorkingSet.cc	fragment / Frame.fwd.hh
remodel / RemodelWorkingSet.cc	kinematics / Jump.hh
remodel / RemodelWorkingSet.cc	fragment / OrderedFragSet.fwd.hh
remodel / RemodelWorkingSet.cc	pose / Pose.hh
remodel / RemodelWorkingSet.cc	pack / task / ResfileReader.fwd.hh
remodel / RemodelWorkingSet.cc	pack / task / ResfileReader.hh
remodel / RemodelWorkingSet.cc	chemical / ResidueType.hh
remodel / RemodelWorkingSet.cc	pack / task / TaskFactory.hh
remodel / RemodelWorkingSet.hh	pack / task / PackerTask.hh
remodel / RemodelWorkingSet.hh	pose / Pose.hh
constraints / RemoveCsts.cc	scoring / constraints / Constraint.hh
constraints / RemoveCsts.cc	scoring / constraints / ConstraintSet.hh
constraints / RemoveCsts.cc	pose / Pose.hh
constraints / RemoveCsts.hh	pose / Pose.fwd.hh
constraints / RemoveCsts.hh	types.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / AmbiguousConstraint.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / AngleConstraint.hh
remodel / ResidueVicinityRCG.cc	id / AtomID.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / AtomPairConstraint.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / DihedralConstraint.hh
remodel / ResidueVicinityRCG.cc	pose / Pose.hh
remodel / ResidueVicinityRCG.cc	id / SequenceMapping.hh
remodel / ResidueVicinityRCG.hh	scoring / constraints / Constraint.fwd.hh
remodel / ResidueVicinityRCG.hh	scoring / constraints / Func.fwd.hh
remodel / ResidueVicinityRCG.hh	pose / Pose.fwd.hh
remodel / ResidueVicinityRCG.hh	types.hh
build / SegmentInsert.cc	pose / annotated_sequence.hh
build / SegmentInsert.cc	id / AtomID.hh
build / SegmentInsert.cc	conformation / Conformation.hh
build / SegmentInsert.cc	kinematics / constants.hh
build / SegmentInsert.cc	conformation / signals / LengthEvent.hh
build / SegmentInsert.cc	kinematics / MoveMap.hh
build / SegmentInsert.cc	pose / PDBInfo.hh
build / SegmentInsert.cc	conformation / Residue.hh
build / SegmentInsert.cc	id / TorsionID.hh
build / SegmentInsert.cc	id / types.hh
build / SegmentInsert.cc	conformation / util.hh
build / SegmentInsert.hh	kinematics / MoveMap.hh
build / SegmentInsert.hh	pose / Pose.hh
build / SegmentRebuild.cc	pose / annotated_sequence.hh
build / SegmentRebuild.cc	conformation / Conformation.hh
build / SegmentRebuild.cc	kinematics / constants.hh
build / SegmentRebuild.cc	kinematics / FoldTree.hh
build / SegmentRebuild.cc	conformation / signals / LengthEvent.hh
build / SegmentRebuild.cc	kinematics / MoveMap.hh
build / SegmentRebuild.cc	pose / PDBInfo.hh
build / SegmentRebuild.cc	pose / Pose.hh
build / SegmentRebuild.cc	conformation / ResidueFactory.hh
build / SegmentRebuild.cc	chemical / ResidueType.hh
build / SegmentRebuild.cc	id / TorsionID.hh
build / SegmentRebuild.cc	conformation / util.hh
build / SegmentRebuild.hh	conformation / signals / LengthEvent.fwd.hh
build / SegmentRebuild.hh	pose / Pose.fwd.hh
build / SegmentSwap.cc	conformation / Conformation.hh
build / SegmentSwap.cc	kinematics / FoldTree.hh
build / SegmentSwap.cc	conformation / signals / LengthEvent.hh
build / SegmentSwap.cc	pose / PDBInfo.hh
build / SegmentSwap.cc	conformation / util.hh
build / SegmentSwap.hh	conformation / signals / LengthEvent.fwd.hh
build / SegmentSwap.hh	kinematics / MoveMap.hh
build / SegmentSwap.hh	pose / Pose.hh
methods / util.cc	chemical / AA.hh
methods / util.cc	scoring / constraints / AtomPairConstraint.hh
methods / util.cc	conformation / Conformation.hh
methods / util.cc	scoring / constraints / ConstraintSet.hh
methods / util.cc	scoring / constraints / CoordinateConstraint.hh
methods / util.cc	graph / DisjointSets.hh
methods / util.cc	kinematics / FoldTree.hh
methods / util.cc	kinematics / MoveMap.hh
methods / util.cc	pack / task / operation / NoRepackDisulfides.hh
methods / util.cc	pack / task / PackerTask.hh
methods / util.cc	pose / PDBInfo.hh
methods / util.cc	pose / PDBPoseMap.hh
methods / util.cc	pose / Pose.hh
methods / util.cc	pack / task / ResfileReader.hh
methods / util.cc	conformation / Residue.hh
methods / util.cc	pack / task / TaskFactory.hh
methods / util.cc	pack / task / operation / TaskOperations.hh
methods / util.cc	types.hh
methods / util.cc	id / types.hh
methods / util.cc	pose / util.hh
methods / util.cc	chemical / VariantType.hh
methods / util.hh	graph / DisjointSets.fwd.hh
methods / util.hh	kinematics / FoldTree.fwd.hh
methods / util.hh	pack / task / PackerTask.fwd.hh
methods / util.hh	pose / Pose.fwd.hh
methods / util.hh	pack / task / TaskFactory.fwd.hh
methods / util.hh	types.hh
components / VarLengthBuild.cc	pose / datacache / CacheableObserverType.hh
components / VarLengthBuild.cc	fragment / ConstantLengthFragSet.hh
components / VarLengthBuild.cc	scoring / Energies.hh
components / VarLengthBuild.cc	fragment / picking_old / FragmentLibraryManager.hh
components / VarLengthBuild.cc	fragment / Frame.hh
components / VarLengthBuild.cc	fragment / FrameIterator.hh
components / VarLengthBuild.cc	fragment / FrameIteratorWorker_.hh
components / VarLengthBuild.cc	fragment / IndependentBBTorsionSRFD.hh
components / VarLengthBuild.cc	kinematics / MoveMap.hh
components / VarLengthBuild.cc	pose / datacache / ObserverCache.hh
components / VarLengthBuild.cc	fragment / OrderedFragSet.hh
components / VarLengthBuild.cc	pose / Pose.hh
components / VarLengthBuild.cc	chemical / ResidueTypeSet.hh
components / VarLengthBuild.cc	scoring / ScoreFunction.hh
components / VarLengthBuild.cc	scoring / ScoreFunctionFactory.hh
components / VarLengthBuild.cc	id / SequenceMapping.hh
components / VarLengthBuild.cc	util / SwitchResidueTypeSet.hh
components / VarLengthBuild.cc	fragment / picking_old / vall / util.hh
components / VarLengthBuild.cc	pose / symmetry / util.hh
components / VarLengthBuild.hh	fragment / ConstantLengthFragSet.fwd.hh
components / VarLengthBuild.hh	fragment / FrameList.fwd.hh
components / VarLengthBuild.hh	kinematics / MoveMap.fwd.hh
components / VarLengthBuild.hh	fragment / OrderedFragSet.fwd.hh
components / VarLengthBuild.hh	pose / Pose.fwd.hh
components / VarLengthBuild.hh	scoring / ScoreFunction.fwd.hh