ligand_docking → core Relation

File in src/protocols/ligand_docking	Includes file in src/core
AddHydrogen.cc	chemical / ChemicalManager.hh
AddHydrogen.cc	kinematics / Jump.hh
AddHydrogen.cc	chemical / PatchOperation.hh
AddHydrogen.cc	pose / Pose.hh
AddHydrogen.cc	conformation / Residue.hh
AddHydrogen.cc	chemical / ResidueConnection.hh
AddHydrogen.cc	chemical / ResidueTypeSet.hh
AddHydrogen.cc	types.hh
AddHydrogen.hh	pose / Pose.fwd.hh
AddHydrogens.cc	conformation / Conformation.hh
AddHydrogens.cc	pose / Pose.hh
AddHydrogens.cc	types.hh
AddHydrogens.cc	pose / util.hh
AddHydrogens.hh	pose / Pose.fwd.hh
AtomCountFilter.cc	conformation / Conformation.hh
AtomCountFilter.cc	pose / Pose.hh
AtomCountFilter.cc	types.hh
AtomCountFilter.cc	pose / util.hh
AtomCountFilter.hh	types.hh
ChainExistsFilter.cc	conformation / Conformation.hh
ChainExistsFilter.cc	pose / Pose.hh
ChainExistsFilter.cc	types.hh
ChainExistsFilter.cc	pose / util.hh
ChainExistsFilter.hh	types.hh
CompleteConnectionsFilter.cc	conformation / Conformation.hh
CompleteConnectionsFilter.cc	pose / Pose.hh
CompleteConnectionsFilter.cc	types.hh
CompleteConnectionsFilter.cc	pose / util.hh
CompleteConnectionsFilter.hh	types.hh
CompoundTranslate.cc	kinematics / Jump.hh
CompoundTranslate.cc	types.hh
CompoundTranslate.cc	pose / util.hh
FinalMinimizer.cc	kinematics / FoldTree.hh
FinalMinimizer.cc	optimization / MinimizerOptions.hh
FinalMinimizer.cc	kinematics / MoveMap.hh
FinalMinimizer.cc	pose / Pose.hh
FinalMinimizer.cc	scoring / ScoreFunction.hh
FinalMinimizer.cc	types.hh
FinalMinimizer.hh	scoring / ScoreFunction.fwd.hh
grid_functions.cc	graph / Graph.hh
grid_functions.cc	pack / task / PackerTask.hh
grid_functions.cc	pose / Pose.hh
grid_functions.cc	conformation / Residue.hh
grid_functions.cc	chemical / ResidueType.hh
grid_functions.cc	pack / dunbrack / RotamerLibrary.hh
grid_functions.cc	scoring / ScoreFunction.hh
grid_functions.cc	pack / task / TaskFactory.hh
grid_functions.hh	grid / CartGrid.hh
grid_functions.hh	pose / Pose.fwd.hh
grid_functions.hh	conformation / Residue.fwd.hh
GrowLigand.cc	chemical / AtomTypeSet.hh
GrowLigand.cc	chemical / ChemicalManager.hh
GrowLigand.cc	conformation / Conformation.hh
GrowLigand.cc	pose / Pose.hh
GrowLigand.cc	conformation / Residue.hh
GrowLigand.cc	chemical / ResidueSelector.hh
GrowLigand.cc	types.hh
GrowLigand.cc	pose / util.hh
GrowLigand.hh	pose / Pose.fwd.hh
GrowLigand.hh	conformation / Residue.fwd.hh
HBondAcceptorFilter.cc	conformation / Conformation.hh
HBondAcceptorFilter.cc	pose / Pose.hh
HBondAcceptorFilter.cc	types.hh
HBondAcceptorFilter.cc	pose / util.hh
HBondAcceptorFilter.hh	types.hh
HBondDonorFilter.cc	conformation / Conformation.hh
HBondDonorFilter.cc	pose / Pose.hh
HBondDonorFilter.cc	types.hh
HBondDonorFilter.cc	pose / util.hh
HBondDonorFilter.hh	types.hh
HeavyAtomFilter.cc	conformation / Conformation.hh
HeavyAtomFilter.cc	pose / Pose.hh
HeavyAtomFilter.cc	types.hh
HeavyAtomFilter.cc	pose / util.hh
HeavyAtomFilter.hh	types.hh
HighResDocker.cc	optimization / MinimizerOptions.hh
HighResDocker.cc	kinematics / MoveMap.hh
HighResDocker.cc	pack / task / PackerTask.hh
HighResDocker.cc	pose / Pose.hh
HighResDocker.cc	pack / task / ResfileReader.hh
HighResDocker.cc	conformation / Residue.hh
HighResDocker.cc	chemical / ResidueType.hh
HighResDocker.cc	chemical / ResidueTypeSet.hh
HighResDocker.cc	scoring / ScoreFunction.hh
HighResDocker.cc	pack / task / TaskFactory.hh
HighResDocker.cc	types.hh
HighResDocker.cc	pack / rotamer_set / UnboundRotamersOperation.hh
HighResDocker.cc	pose / util.hh
HighResDocker.hh	pack / task / PackerTask.fwd.hh
HighResDocker.hh	pose / Pose.fwd.hh
HighResDocker.hh	scoring / ScoreFunction.fwd.hh
HighResDocker.hh	types.hh
ligand_options / Interface.cc	types.hh
ligand_options / Interface.hh	types.hh
ligand_options / interface_distance_functions.cc	conformation / Residue.hh
ligand_options / interface_distance_functions.cc	types.hh
ligand_options / interface_distance_functions.hh	conformation / Residue.fwd.hh
ligand_options / interface_distance_functions.hh	types.hh
InterfaceBuilder.cc	conformation / Conformation.hh
InterfaceBuilder.cc	pose / Pose.hh
InterfaceBuilder.cc	types.hh
InterfaceBuilder.cc	pose / util.hh
InterfaceBuilder.hh	pose / Pose.fwd.hh
InterfaceBuilder.hh	conformation / Residue.fwd.hh
InterfaceBuilder.hh	types.hh
InterfaceScoreCalculator.cc	scoring / Energies.hh
InterfaceScoreCalculator.cc	import_pose / import_pose.hh
InterfaceScoreCalculator.cc	pose / Pose.hh
InterfaceScoreCalculator.cc	scoring / ScoreFunction.hh
InterfaceScoreCalculator.cc	types.hh
InterfaceScoreCalculator.cc	pose / util.hh
InterfaceScoreCalculator.hh	scoring / ScoreFunction.fwd.hh
ligand_dock_impl.cc	chemical / ChemicalManager.hh
ligand_dock_impl.cc	import_pose / import_pose.hh
ligand_dock_impl.cc	pose / Pose.hh
ligand_dock_impl.cc	scoring / ScoreFunction.hh
ligand_dock_impl.cc	types.hh
ligand_functions.cc	scoring / constraints / AmbiguousConstraint.hh
ligand_functions.cc	id / AtomID.hh
ligand_functions.cc	scoring / constraints / CircularHarmonicFunc.hh
ligand_functions.cc	scoring / constraints / Constraint.hh
ligand_functions.cc	scoring / constraints / ConstraintSet.hh
ligand_functions.cc	scoring / constraints / DihedralConstraint.hh
ligand_functions.cc	pose / Pose.hh
ligand_functions.cc	conformation / Residue.hh
ligand_functions.hh	scoring / constraints / Constraint.fwd.hh
ligand_functions.hh	pose / Pose.fwd.hh
ligand_functions.hh	conformation / Residue.fwd.hh
ligand_functions.hh	chemical / ResidueType.fwd.hh
ligand_scores.cc	conformation / Conformation.hh
ligand_scores.cc	scoring / Energies.hh
ligand_scores.cc	kinematics / FoldTree.hh
ligand_scores.cc	kinematics / MoveMap.fwd.hh
ligand_scores.cc	pose / PDBInfo.hh
ligand_scores.cc	conformation / Residue.hh
ligand_scores.cc	scoring / rms_util.hh
ligand_scores.cc	scoring / rms_util.tmpl.hh
ligand_scores.cc	scoring / ScoreFunction.hh
ligand_scores.cc	scoring / ScoreType.hh
ligand_scores.cc	types.hh
ligand_scores.cc	pose / util.hh
ligand_scores.hh	pose / Pose.fwd.hh
ligand_scores.hh	scoring / ScoreFunction.fwd.hh
ligand_scores.hh	types.hh
LigandArea.cc	types.hh
LigandArea.hh	types.hh
LigandBaseProtocol.cc	kinematics / tree / Atom.hh
LigandBaseProtocol.cc	id / AtomID.hh
LigandBaseProtocol.cc	kinematics / AtomTree.hh
LigandBaseProtocol.cc	chemical / AtomType.hh
LigandBaseProtocol.cc	chemical / automorphism.hh
LigandBaseProtocol.cc	scoring / constraints / CoordinateConstraint.hh
LigandBaseProtocol.cc	scoring / Energies.hh
LigandBaseProtocol.cc	scoring / EnergyGraph.hh
LigandBaseProtocol.cc	scoring / methods / EnergyMethodOptions.hh
LigandBaseProtocol.cc	kinematics / FoldTree.hh
LigandBaseProtocol.cc	graph / Graph.hh
LigandBaseProtocol.cc	scoring / constraints / HarmonicFunc.hh
LigandBaseProtocol.cc	kinematics / MoveMap.hh
LigandBaseProtocol.cc	pack / task / PackerTask.hh
LigandBaseProtocol.cc	pose / Pose.hh
LigandBaseProtocol.cc	conformation / Residue.hh
LigandBaseProtocol.cc	chemical / ResidueType.hh
LigandBaseProtocol.cc	chemical / ResidueTypeSet.hh
LigandBaseProtocol.cc	pack / dunbrack / RotamerLibrary.hh
LigandBaseProtocol.cc	scoring / ScoreFunction.hh
LigandBaseProtocol.cc	scoring / ScoreFunctionFactory.hh
LigandBaseProtocol.cc	pack / task / TaskFactory.hh
LigandBaseProtocol.cc	pack / rotamer_set / UnboundRotamersOperation.hh
LigandBaseProtocol.cc	pose / util.hh
LigandBaseProtocol.cc	chemical / VariantType.hh
LigandBaseProtocol.hh	import_pose / atom_tree_diffs / atom_tree_diff.hh
LigandBaseProtocol.hh	scoring / constraints / Constraint.fwd.hh
LigandBaseProtocol.hh	scoring / constraints / Func.fwd.hh
LigandBaseProtocol.hh	kinematics / MoveMap.fwd.hh
LigandBaseProtocol.hh	pack / task / PackerTask.fwd.hh
LigandBaseProtocol.hh	conformation / Residue.fwd.hh
LigandBaseProtocol.hh	scoring / ScoreFunction.fwd.hh
LigandBaseProtocol.hh	types.hh
LigandBaseProtocol.hh	pack / rotamer_set / UnboundRotamersOperation.fwd.hh
LigandDesign.cc	chemical / ChemicalManager.hh
LigandDesign.cc	conformation / Conformation.hh
LigandDesign.cc	pose / Pose.hh
LigandDesign.cc	conformation / Residue.hh
LigandDesign.cc	chemical / ResidueSelector.hh
LigandDesign.cc	types.hh
LigandDesign.cc	pose / util.hh
LigandDesign.hh	pose / Pose.fwd.hh
LigandDesign.hh	conformation / Residue.fwd.hh
LigandDockProtocol.cc	grid / CartGrid.hh
LigandDockProtocol.cc	conformation / Conformation.hh
LigandDockProtocol.cc	kinematics / Edge.hh
LigandDockProtocol.cc	scoring / Energies.hh
LigandDockProtocol.cc	kinematics / FoldTree.hh
LigandDockProtocol.cc	graph / Graph.hh
LigandDockProtocol.cc	optimization / MinimizerOptions.hh
LigandDockProtocol.cc	kinematics / MoveMap.hh
LigandDockProtocol.cc	pack / task / PackerTask.hh
LigandDockProtocol.cc	pose / Pose.hh
LigandDockProtocol.cc	conformation / Residue.hh
LigandDockProtocol.cc	scoring / rms_util.hh
LigandDockProtocol.cc	pack / dunbrack / RotamerConstraint.hh
LigandDockProtocol.cc	scoring / sasa.hh
LigandDockProtocol.cc	scoring / ScoreFunction.hh
LigandDockProtocol.cc	types.hh
LigandDockProtocol.hh	kinematics / MoveMap.fwd.hh
LigandDockProtocol.hh	pose / Pose.fwd.hh
LigandDockProtocol.hh	scoring / ScoreFunction.fwd.hh
MinimizeBackbone.cc	kinematics / tree / Atom.hh
MinimizeBackbone.cc	kinematics / AtomTree.hh
MinimizeBackbone.cc	scoring / constraints / CoordinateConstraint.hh
MinimizeBackbone.cc	kinematics / Edge.hh
MinimizeBackbone.cc	kinematics / FoldTree.hh
MinimizeBackbone.cc	scoring / constraints / HarmonicFunc.hh
MinimizeBackbone.cc	pose / Pose.hh
MinimizeBackbone.cc	conformation / Residue.hh
MinimizeBackbone.cc	types.hh
MinimizeBackbone.cc	pose / util.hh
MinimizeBackbone.cc	chemical / VariantType.hh
MinimizeBackbone.hh	id / AtomID.fwd.hh
MinimizeBackbone.hh	kinematics / Edge.fwd.hh
MinimizeBackbone.hh	kinematics / FoldTree.fwd.hh
MinimizeLigand.cc	conformation / Conformation.hh
MinimizeLigand.cc	pose / Pose.hh
MinimizeLigand.cc	types.hh
MinimizeLigand.cc	pose / util.hh
MolarMassFilter.cc	conformation / Conformation.hh
MolarMassFilter.cc	pose / Pose.hh
MolarMassFilter.cc	types.hh
MolarMassFilter.cc	pose / util.hh
MolarMassFilter.hh	types.hh
MolecularMassFilter.cc	conformation / Conformation.hh
MolecularMassFilter.cc	pose / Pose.hh
MolecularMassFilter.cc	types.hh
MolecularMassFilter.cc	pose / util.hh
MolecularMassFilter.hh	types.hh
MoveMapBuilder.cc	conformation / Conformation.hh
MoveMapBuilder.cc	kinematics / Edge.hh
MoveMapBuilder.cc	kinematics / FoldTree.hh
MoveMapBuilder.cc	kinematics / MoveMap.hh
MoveMapBuilder.cc	pose / Pose.hh
MoveMapBuilder.cc	conformation / Residue.hh
MoveMapBuilder.cc	types.hh
MoveMapBuilder.cc	pose / util.hh
MoveMapBuilder.hh	kinematics / MoveMap.fwd.hh
MoveMapBuilder.hh	pose / Pose.fwd.hh
MoveMapBuilder.hh	types.hh
RandomConformerMover.cc	graph / Graph.hh
RandomConformerMover.cc	pack / task / PackerTask.hh
RandomConformerMover.cc	pose / Pose.hh
RandomConformerMover.cc	conformation / Residue.hh
RandomConformerMover.cc	chemical / ResidueType.hh
RandomConformerMover.cc	pack / dunbrack / RotamerLibrary.hh
RandomConformerMover.cc	scoring / ScoreFunction.hh
RandomConformerMover.cc	pack / task / TaskFactory.hh
RandomConformers.cc	conformation / Conformation.hh
RandomConformers.cc	pose / Pose.hh
RandomConformers.cc	types.hh
RandomConformers.cc	pose / util.hh
ResidueTorsionRestraints.cc	id / AtomID.hh
ResidueTorsionRestraints.cc	chemical / AtomType.hh
ResidueTorsionRestraints.cc	scoring / constraints / CircularHarmonicFunc.hh
ResidueTorsionRestraints.cc	scoring / constraints / ConstraintSet.hh
ResidueTorsionRestraints.cc	scoring / constraints / DihedralConstraint.hh
ResidueTorsionRestraints.cc	scoring / constraints / Func.hh
ResidueTorsionRestraints.cc	pose / Pose.hh
ResidueTorsionRestraints.cc	conformation / Residue.hh
ResidueTorsionRestraints.hh	scoring / constraints / Constraint.hh
ResidueTorsionRestraints.hh	scoring / constraints / ConstraintSet.fwd.hh
ResidueTorsionRestraints.hh	pose / Pose.fwd.hh
ResidueTorsionRestraints.hh	types.hh
RigidSearchMover.cc	conformation / Conformation.hh
RigidSearchMover.cc	kinematics / Jump.hh
RigidSearchMover.cc	pose / Pose.hh
RigidSearchMover.cc	scoring / ScoreFunction.hh
RigidSearchMover.cc	kinematics / Stub.hh
RigidSearchMover.hh	pose / Pose.fwd.hh
RigidSearchMover.hh	scoring / ScoreFunction.fwd.hh
Rotate.cc	conformation / Conformation.hh
Rotate.cc	pose / Pose.hh
Rotate.cc	conformation / Residue.hh
Rotate.cc	scoring / rms_util.tmpl.hh
Rotate.cc	types.hh
Rotate.cc	pose / util.hh
Rotate.hh	grid / CartGrid.fwd.hh
Rotate.hh	kinematics / Jump.hh
Rotate.hh	conformation / Residue.fwd.hh
Rotates.cc	types.hh
Rotates.cc	pose / util.hh
SlideTogether.cc	types.hh
SlideTogether.cc	pose / util.hh
StartFrom.cc	chemical / AtomType.hh
StartFrom.cc	types.hh
StartFrom.cc	pose / util.hh
StartFrom.hh	pose / Pose.fwd.hh
StartFrom.hh	types.hh
TetherLigand.cc	kinematics / tree / Atom.hh
TetherLigand.cc	kinematics / AtomTree.hh
TetherLigand.cc	conformation / Conformation.hh
TetherLigand.cc	scoring / constraints / CoordinateConstraint.hh
TetherLigand.cc	scoring / constraints / HarmonicFunc.hh
TetherLigand.cc	pose / Pose.hh
TetherLigand.cc	types.hh
TetherLigand.cc	pose / util.hh
TetherLigand.hh	scoring / constraints / Constraint.fwd.hh
Transform.cc	conformation / Conformation.hh
Transform.cc	kinematics / Jump.hh
Transform.cc	pose / Pose.hh
Transform.cc	chemical / ResidueType.hh
Transform.cc	pose / util.hh
Transform.hh	kinematics / Jump.fwd.hh
Transform.hh	conformation / Residue.fwd.hh
Translate.cc	conformation / Conformation.hh
Translate.cc	pose / Pose.hh
Translate.cc	conformation / Residue.hh
Translate.cc	types.hh
Translate.cc	pose / util.hh
Translate.hh	grid / CartGrid.fwd.hh
UnconstrainedTorsionsMover.hh	pose / Pose.fwd.hh