simple_filters → core Relation

File in src/protocols/simple_filters	Includes file in src/core
AbinitioBaseFilter.cc	conformation / Conformation.hh
AbinitioBaseFilter.cc	pose / Pose.hh
AbinitioBaseFilter.cc	conformation / Residue.hh
AbinitioBaseFilter.cc	pose / util.hh
AbinitioBaseFilter.hh	pose / Pose.fwd.hh
AbinitioBaseFilter.hh	types.hh
AlaScan.cc	chemical / AA.hh
AlaScan.cc	chemical / AtomType.hh
AlaScan.cc	chemical / ChemicalManager.fwd.hh
AlaScan.cc	conformation / Conformation.hh
AlaScan.cc	scoring / Energies.hh
AlaScan.cc	kinematics / FoldTree.hh
AlaScan.cc	pack / pack_rotamers.hh
AlaScan.cc	pack / task / PackerTask.hh
AlaScan.cc	pose / PDBInfo.hh
AlaScan.cc	pose / Pose.hh
AlaScan.cc	scoring / ScoreFunction.hh
AlaScan.cc	scoring / ScoreFunctionFactory.hh
AlaScan.cc	scoring / ScoreType.hh
AlaScan.cc	scoring / ScoreTypeManager.hh
AlaScan.cc	util / SwitchResidueTypeSet.hh
AlaScan.cc	conformation / symmetry / SymmetricConformation.hh
AlaScan.cc	scoring / symmetry / SymmetricScoreFunction.hh
AlaScan.cc	conformation / symmetry / SymmetryInfo.hh
AlaScan.cc	pack / task / TaskFactory.hh
AlaScan.cc	types.hh
AlaScan.cc	pose / symmetry / util.hh
AlaScan.hh	pose / Pose.fwd.hh
AlaScan.hh	scoring / ScoreFunction.hh
AlaScan.hh	scoring / ScoreType.hh
AlaScan.hh	types.hh
AtomicContactFilter.cc	pose / Pose.hh
AtomicContactFilter.cc	conformation / Residue.hh
AtomicContactFilter.cc	pose / selection.hh
AtomicContactFilter.cc	types.hh
AtomicContactFilter.hh	pose / Pose.fwd.hh
AtomicContactFilter.hh	types.hh
AtomicDistanceFilter.cc	chemical / AtomType.hh
AtomicDistanceFilter.cc	pose / Pose.hh
AtomicDistanceFilter.cc	conformation / Residue.hh
AtomicDistanceFilter.cc	pose / selection.hh
AtomicDistanceFilter.cc	types.hh
AtomicDistanceFilter.hh	pose / Pose.fwd.hh
AtomicDistanceFilter.hh	types.hh
BatchNrEvaluator.cc	io / silent / SilentStruct.hh
BatchNrEvaluator.hh	pose / Pose.fwd.hh
BatchNrEvaluator.hh	io / silent / silent.fwd.hh
BuriedUnsatHbondFilter.cc	pose / Pose.hh
BuriedUnsatHbondFilter.cc	scoring / ScoreFunction.hh
BuriedUnsatHbondFilter.cc	scoring / ScoreFunctionFactory.hh
BuriedUnsatHbondFilter.cc	pack / task / TaskFactory.hh
BuriedUnsatHbondFilter.hh	pose / Pose.fwd.hh
BuriedUnsatHbondFilter.hh	scoring / ScoreFunction.fwd.hh
BuriedUnsatHbondFilter.hh	pack / task / TaskFactory.fwd.hh
CamShiftEvaluator.cc	pose / Pose.hh
CamShiftEvaluator.cc	io / silent / SilentStruct.hh
CamShiftEvaluator.hh	pose / Pose.fwd.hh
CamShiftEvaluatorCreator.cc	io / silent / silent.fwd.hh
CamShiftEvaluatorCreator.cc	io / silent / SilentStruct.hh
CamShiftEvaluatorCreator.hh	types.hh
ChiWellRmsdEvaluator.cc	pack / dunbrack / DunbrackRotamer.fwd.hh
ChiWellRmsdEvaluator.cc	pose / Pose.hh
ChiWellRmsdEvaluator.cc	conformation / Residue.hh
ChiWellRmsdEvaluator.cc	scoring / rms_util.hh
ChiWellRmsdEvaluator.cc	pack / dunbrack / RotamerLibrary.hh
ChiWellRmsdEvaluator.cc	pose / metrics / simple_calculators / SasaCalculator.hh
ChiWellRmsdEvaluator.cc	io / silent / SilentStruct.hh
ChiWellRmsdEvaluator.hh	pose / Pose.fwd.hh
ChiWellRmsdEvaluator.hh	scoring / rms_util.hh
ChiWellRmsdEvaluator.hh	io / silent / silent.fwd.hh
ChiWellRmsdEvaluatorCreator.cc	import_pose / import_pose.hh
ChiWellRmsdEvaluatorCreator.cc	pose / Pose.hh
ChiWellRmsdEvaluatorCreator.cc	io / silent / silent.fwd.hh
ChiWellRmsdEvaluatorCreator.cc	io / silent / SilentStruct.hh
ChiWellRmsdEvaluatorCreator.hh	types.hh
ClashEvaluator.cc	pose / Pose.hh
ClashEvaluator.cc	scoring / rms_util.hh
ClashEvaluator.cc	io / silent / SilentStruct.hh
ClashEvaluator.hh	pose / Pose.hh
ClashEvaluator.hh	kinematics / RT.hh
ClashEvaluator.hh	io / silent / silent.fwd.hh
ClashEvaluator.hh	kinematics / Stub.hh
COFilter.cc	scoring / methods / ContactOrderEnergy.hh
COFilter.cc	pose / Pose.hh
COFilter.cc	scoring / ScoreFunction.fwd.hh
COFilter.cc	types.hh
COFilter.hh	pose / Pose.fwd.hh
ConservedPosMutationFilter.cc	chemical / AA.hh
ConservedPosMutationFilter.cc	pose / Pose.hh
ConservedPosMutationFilter.cc	chemical / ResidueType.hh
ConservedPosMutationFilter.cc	sequence / SequenceProfile.hh
ConservedPosMutationFilter.cc	types.hh
ConservedPosMutationFilter.hh	pose / Pose.fwd.hh
ConstraintScoreCutoffFilter.cc	scoring / constraints / ConstraintSet.hh
ConstraintScoreCutoffFilter.cc	scoring / Energies.hh
ConstraintScoreCutoffFilter.cc	scoring / EnergyGraph.hh
ConstraintScoreCutoffFilter.cc	scoring / EnergyMap.hh
ConstraintScoreCutoffFilter.cc	scoring / LREnergyContainer.hh
ConstraintScoreCutoffFilter.cc	pose / Pose.hh
ConstraintScoreCutoffFilter.cc	chemical / ResidueType.hh
ConstraintScoreCutoffFilter.cc	scoring / ScoreFunction.hh
ConstraintScoreCutoffFilter.cc	scoring / ScoreType.hh
ConstraintScoreCutoffFilter.cc	types.hh
ConstraintScoreCutoffFilter.hh	scoring / constraints / Constraint.hh
ConstraintScoreCutoffFilter.hh	pose / Pose.fwd.hh
ConstraintScoreCutoffFilter.hh	scoring / ScoreType.hh
ContactMapEvaluator.cc	pose / Pose.hh
ContactMapEvaluator.cc	conformation / Residue.hh
ContactMapEvaluator.cc	io / silent / SilentStruct.hh
ContactMapEvaluator.cc	types.hh
ContactMapEvaluator.hh	pose / Pose.hh
ContactMapEvaluator.hh	types.hh
ContactMapEvaluatorCreator.cc	import_pose / import_pose.hh
ContactMapEvaluatorCreator.cc	pose / Pose.hh
ContactMapEvaluatorCreator.cc	io / silent / silent.fwd.hh
ContactMapEvaluatorCreator.cc	io / silent / SilentStruct.hh
ContactMapEvaluatorCreator.hh	types.hh
DdgFilter.cc	chemical / ChemicalManager.fwd.hh
DdgFilter.cc	conformation / Conformation.hh
DdgFilter.cc	scoring / Energies.hh
DdgFilter.cc	kinematics / FoldTree.hh
DdgFilter.cc	pose / PDBInfo.hh
DdgFilter.cc	pose / Pose.hh
DdgFilter.cc	util / SwitchResidueTypeSet.hh
DdgFilter.cc	pose / util.hh
DdgFilter.hh	pose / Pose.fwd.hh
DdgFilter.hh	scoring / ScoreFunction.hh
DdgFilter.hh	scoring / ScoreType.hh
DdgFilter.hh	pack / task / TaskFactory.hh
DeltaFilter.cc	import_pose / import_pose.hh
DeltaFilter.cc	pose / Pose.hh
DeltaFilter.cc	scoring / ScoreFunction.hh
DeltaFilter.hh	pose / Pose.fwd.hh
EnergyPerResidueFilter.cc	chemical / ChemicalManager.fwd.hh
EnergyPerResidueFilter.cc	conformation / Conformation.hh
EnergyPerResidueFilter.cc	scoring / Energies.hh
EnergyPerResidueFilter.cc	scoring / methods / EnergyMethodOptions.hh
EnergyPerResidueFilter.cc	kinematics / FoldTree.hh
EnergyPerResidueFilter.cc	scoring / hbonds / HBondOptions.hh
EnergyPerResidueFilter.cc	scoring / hbonds / HBondSet.hh
EnergyPerResidueFilter.cc	pose / PDBInfo.hh
EnergyPerResidueFilter.cc	pose / Pose.hh
EnergyPerResidueFilter.cc	pose / selection.hh
EnergyPerResidueFilter.cc	util / SwitchResidueTypeSet.hh
EnergyPerResidueFilter.hh	pose / Pose.fwd.hh
EnergyPerResidueFilter.hh	scoring / ScoreFunction.hh
EnergyPerResidueFilter.hh	scoring / ScoreType.hh
EvaluatedTrialMover.cc	scoring / Energies.hh
EvaluatedTrialMover.cc	pose / Pose.hh
EvaluatedTrialMover.cc	io / silent / ProteinSilentStruct.hh
EvaluatedTrialMover.cc	io / silent / ProteinSilentStruct.tmpl.hh
EvaluatedTrialMover.cc	scoring / ScoreFunction.hh
EvaluatedTrialMover.cc	io / silent / SilentStruct.hh
EvaluatedTrialMover.hh	pose / Pose.fwd.hh
EvaluatedTrialMover.hh	io / silent / silent.fwd.hh
ExpiryFilter.hh	pose / Pose.fwd.hh
ExpiryFilter.hh	scoring / ScoreFunction.hh
ExpiryFilter.hh	types.hh
ExternalEvaluator.cc	pose / Pose.hh
ExternalEvaluator.cc	io / silent / SilentStruct.hh
ExternalEvaluator.hh	pose / Pose.fwd.hh
ExternalEvaluator.hh	io / silent / silent.fwd.hh
ExtraScoreEvaluatorCreator.cc	chemical / ResidueType.hh
ExtraScoreEvaluatorCreator.cc	scoring / ScoreFunction.hh
ExtraScoreEvaluatorCreator.cc	scoring / ScoreFunctionFactory.hh
ExtraScoreEvaluatorCreator.cc	io / silent / silent.fwd.hh
ExtraScoreEvaluatorCreator.cc	io / silent / SilentStruct.hh
ExtraScoreEvaluatorCreator.cc	scoring / constraints / util.hh
ExtraScoreEvaluatorCreator.hh	types.hh
FileExistFilter.hh	pose / Pose.fwd.hh
FileExistFilter.hh	scoring / ScoreFunction.hh
FileExistFilter.hh	types.hh
FileRemoveFilter.hh	pose / Pose.fwd.hh
FileRemoveFilter.hh	scoring / ScoreFunction.hh
FileRemoveFilter.hh	types.hh
HolesFilter.cc	scoring / packing / compute_holes_score.hh
HolesFilter.cc	pose / Pose.hh
HolesFilter.cc	types.hh
HolesFilter.hh	pose / Pose.fwd.hh
InterfaceBindingEnergyDensityFilter.cc	types.hh
InterfaceBindingEnergyDensityFilter.hh	pose / Pose.fwd.hh
InterfaceBindingEnergyDensityFilter.hh	scoring / ScoreType.hh
InterfaceBindingEnergyDensityFilter.hh	types.hh
InterfaceSasaFilter.cc	id / AtomID_Map.hh
InterfaceSasaFilter.cc	chemical / AtomType.hh
InterfaceSasaFilter.cc	pose / Pose.hh
InterfaceSasaFilter.cc	conformation / Residue.hh
InterfaceSasaFilter.cc	conformation / symmetry / SymmetryInfo.hh
InterfaceSasaFilter.cc	types.hh
InterfaceSasaFilter.cc	pose / symmetry / util.hh
InterfaceSasaFilter.hh	pose / Pose.fwd.hh
InterfaceSasaFilter.hh	scoring / ScoreType.hh
InterfaceSasaFilter.hh	types.hh
JScoreEvaluator.cc	pose / Pose.hh
JScoreEvaluator.cc	scoring / ScoreFunction.hh
JScoreEvaluator.cc	scoring / ScoreFunctionFactory.hh
JScoreEvaluator.cc	util / SwitchResidueTypeSet.hh
JScoreEvaluator.cc	types.hh
JScoreEvaluator.hh	pose / Pose.fwd.hh
JScoreEvaluator.hh	chemical / ResidueTypeSet.fwd.hh
JScoreEvaluator.hh	scoring / ScoreFunction.fwd.hh
JScoreEvaluator.hh	io / silent / SilentStruct.fwd.hh
JScoreEvaluator.hh	types.hh
JScoreEvaluatorCreator.cc	io / silent / silent.fwd.hh
JScoreEvaluatorCreator.cc	io / silent / SilentStruct.hh
JScoreEvaluatorCreator.hh	types.hh
JumpEvaluator.cc	kinematics / tree / Atom.hh
JumpEvaluator.cc	kinematics / AtomTree.hh
JumpEvaluator.cc	conformation / Conformation.hh
JumpEvaluator.cc	kinematics / FoldTree.hh
JumpEvaluator.cc	pose / Pose.hh
JumpEvaluator.cc	io / silent / SilentStruct.hh
JumpEvaluator.hh	id / AtomID.hh
JumpEvaluator.hh	pose / Pose.fwd.hh
JumpEvaluator.hh	io / silent / silent.fwd.hh
JumpEvaluator.hh	kinematics / Stub.hh
JumpNrEvaluatorCreator.cc	io / silent / silent.fwd.hh
JumpNrEvaluatorCreator.cc	io / silent / SilentStruct.hh
JumpNrEvaluatorCreator.hh	types.hh
MinValueEvaluator.hh	pose / Pose.fwd.hh
MinValueEvaluator.hh	io / silent / silent.fwd.hh
NativeEvaluatorCreator.cc	import_pose / import_pose.hh
NativeEvaluatorCreator.cc	pose / Pose.hh
NativeEvaluatorCreator.cc	chemical / ResidueType.hh
NativeEvaluatorCreator.cc	scoring / ScoreFunction.hh
NativeEvaluatorCreator.cc	io / silent / silent.fwd.hh
NativeEvaluatorCreator.cc	io / silent / SilentStruct.hh
NativeEvaluatorCreator.hh	types.hh
NeighborTypeFilter.cc	chemical / ChemicalManager.fwd.hh
NeighborTypeFilter.cc	conformation / Conformation.hh
NeighborTypeFilter.cc	pose / Pose.hh
NeighborTypeFilter.cc	conformation / Residue.hh
NeighborTypeFilter.cc	pose / selection.hh
NeighborTypeFilter.hh	pose / Pose.fwd.hh
NeighborTypeFilter.hh	types.hh
NMerPSSMEnergyFilter.cc	chemical / AtomType.hh
NMerPSSMEnergyFilter.cc	chemical / ChemicalManager.fwd.hh
NMerPSSMEnergyFilter.cc	conformation / Conformation.hh
NMerPSSMEnergyFilter.cc	scoring / Energies.hh
NMerPSSMEnergyFilter.cc	scoring / EnergyGraph.hh
NMerPSSMEnergyFilter.cc	scoring / methods / NMerPSSMEnergy.hh
NMerPSSMEnergyFilter.cc	pose / Pose.hh
NMerPSSMEnergyFilter.cc	scoring / ScoreFunction.hh
NMerPSSMEnergyFilter.cc	scoring / ScoreFunctionFactory.hh
NMerPSSMEnergyFilter.cc	scoring / ScoreType.hh
NMerPSSMEnergyFilter.cc	scoring / ScoreTypeManager.hh
NMerPSSMEnergyFilter.cc	pose / selection.hh
NMerPSSMEnergyFilter.cc	util / SwitchResidueTypeSet.hh
NMerPSSMEnergyFilter.hh	scoring / methods / NMerPSSMEnergy.hh
NMerPSSMEnergyFilter.hh	pose / Pose.fwd.hh
NMerPSSMEnergyFilter.hh	scoring / ScoreFunction.hh
NMerPSSMEnergyFilter.hh	types.hh
NonSequentialNeighborsFilter.cc	conformation / Conformation.hh
NonSequentialNeighborsFilter.cc	pose / Pose.hh
NonSequentialNeighborsFilter.hh	pose / Pose.fwd.hh
NonSequentialNeighborsFilter.hh	types.hh
OperatorFilter.cc	pose / Pose.hh
OperatorFilter.hh	pose / Pose.fwd.hh
OperatorFilter.hh	types.hh
PackerNeighborGraphFilter.cc	graph / Graph.hh
PackerNeighborGraphFilter.cc	pack / packer_neighbors.hh
PackerNeighborGraphFilter.cc	types.hh
PackerNeighborGraphFilter.hh	pack / task / PackerTask.hh
PackerNeighborGraphFilter.hh	scoring / ScoreFunction.hh
PackerNeighborGraphFilter.hh	types.hh
PackStatFilter.cc	scoring / packstat / compute_sasa.hh
PackStatFilter.cc	conformation / Conformation.hh
PackStatFilter.cc	types.hh
PackStatFilter.cc	pose / util.hh
PackStatFilter.hh	pose / Pose.fwd.hh
PalesEvaluator.cc	pose / Pose.hh
PalesEvaluator.cc	io / silent / SilentStruct.hh
PalesEvaluator.hh	pose / Pose.fwd.hh
PalesEvaluatorCreator.cc	io / silent / silent.fwd.hh
PalesEvaluatorCreator.cc	io / silent / SilentStruct.hh
PalesEvaluatorCreator.hh	types.hh
PDDFScoreFilter.cc	types.hh
PDDFScoreFilter.hh	pose / Pose.fwd.hh
PoolEvaluatorCreator.cc	pose / Pose.hh
PoolEvaluatorCreator.cc	io / silent / silent.fwd.hh
PoolEvaluatorCreator.cc	io / silent / SilentStruct.hh
PoolEvaluatorCreator.hh	types.hh
PoseInfoFilter.cc	pose / datacache / CacheableDataType.hh
PoseInfoFilter.cc	kinematics / FoldTree.hh
PoseInfoFilter.cc	pose / PDBInfo.hh
PoseInfoFilter.cc	pose / Pose.hh
PoseInfoFilter.cc	types.hh
PoseInfoFilter.hh	pose / Pose.fwd.hh
PoseInfoFilter.hh	types.hh
PoseMetricEvaluator.hh	pose / Pose.hh
PredictedBurialEvaluator.cc	pose / Pose.hh
PredictedBurialEvaluator.cc	conformation / Residue.hh
PredictedBurialEvaluator.cc	types.hh
PredictedBurialEvaluator.hh	pose / Pose.fwd.hh
PredictedBurialEvaluator.hh	io / silent / SilentStruct.fwd.hh
PredictedBurialEvaluator.hh	types.hh
PredictedBurialFnEvaluatorCreator.cc	io / silent / silent.fwd.hh
PredictedBurialFnEvaluatorCreator.cc	io / silent / SilentStruct.hh
PredictedBurialFnEvaluatorCreator.hh	types.hh
RangeFilter.cc	pose / Pose.hh
RangeFilter.cc	types.hh
RangeFilter.hh	pose / Pose.fwd.hh
RDC_Evaluator.cc	pose / Pose.hh
RDC_Evaluator.cc	scoring / ResidualDipolarCoupling.hh
RDC_Evaluator.cc	scoring / methods / ResidualDipolarCouplingEnergy.hh
RDC_Evaluator.cc	io / silent / SilentStruct.hh
RDC_Evaluator.hh	pose / Pose.fwd.hh
RDC_Evaluator.hh	scoring / ResidualDipolarCoupling.hh
RDC_Evaluator.hh	scoring / rms_util.hh
RDC_Evaluator.hh	io / silent / silent.fwd.hh
RdcEvaluatorCreator.cc	chemical / ResidueType.hh
RdcEvaluatorCreator.cc	io / silent / silent.fwd.hh
RdcEvaluatorCreator.cc	io / silent / SilentStruct.hh
RdcEvaluatorCreator.hh	types.hh
RdcSelectEvaluatorCreator.cc	io / silent / silent.fwd.hh
RdcSelectEvaluatorCreator.cc	io / silent / SilentStruct.hh
RdcSelectEvaluatorCreator.hh	types.hh
RdcTargetEvaluatorCreator.cc	import_pose / import_pose.hh
RdcTargetEvaluatorCreator.cc	pose / Pose.hh
RdcTargetEvaluatorCreator.cc	io / silent / silent.fwd.hh
RdcTargetEvaluatorCreator.cc	io / silent / SilentStruct.hh
RdcTargetEvaluatorCreator.hh	types.hh
RelativePoseFilter.cc	chemical / AA.hh
RelativePoseFilter.cc	conformation / Conformation.hh
RelativePoseFilter.cc	import_pose / import_pose.hh
RelativePoseFilter.cc	pack / pack_rotamers.hh
RelativePoseFilter.cc	pack / task / PackerTask.hh
RelativePoseFilter.cc	pose / PDBInfo.hh
RelativePoseFilter.cc	pose / Pose.hh
RelativePoseFilter.cc	scoring / ScoreFunction.hh
RelativePoseFilter.cc	pose / selection.hh
RelativePoseFilter.cc	conformation / symmetry / SymmData.hh
RelativePoseFilter.cc	conformation / symmetry / SymmDataFactory.hh
RelativePoseFilter.cc	pack / task / TaskFactory.hh
RelativePoseFilter.cc	pack / task / operation / TaskOperations.hh
RelativePoseFilter.cc	pose / symmetry / util.hh
RelativePoseFilter.hh	pose / Pose.fwd.hh
RelativePoseFilter.hh	scoring / ScoreFunction.fwd.hh
RelativePoseFilter.hh	conformation / symmetry / SymmData.fwd.hh
ReportFilter.hh	pose / Pose.fwd.hh
ReportFilter.hh	scoring / ScoreFunction.hh
ReportFilter.hh	types.hh
ResidueBurialFilter.cc	conformation / Conformation.hh
ResidueBurialFilter.cc	pose / Pose.hh
ResidueBurialFilter.cc	conformation / Residue.hh
ResidueBurialFilter.cc	pose / selection.hh
ResidueBurialFilter.cc	pack / task / TaskFactory.hh
ResidueBurialFilter.cc	types.hh
ResidueBurialFilter.hh	pack / task / TaskFactory.fwd.hh
ResidueBurialFilter.hh	types.hh
ResidueCountFilter.cc	pose / Pose.hh
ResidueCountFilter.cc	conformation / Residue.hh
ResidueCountFilter.cc	chemical / ResidueTypeSet.hh
ResidueCountFilter.hh	pose / Pose.fwd.hh
ResidueCountFilter.hh	chemical / ResidueTypeSet.fwd.hh
ResidueCountFilter.hh	scoring / ScoreFunction.hh
ResidueCountFilter.hh	types.hh
ResidueDistanceFilter.cc	conformation / Conformation.hh
ResidueDistanceFilter.cc	pose / Pose.hh
ResidueDistanceFilter.cc	conformation / Residue.hh
ResidueDistanceFilter.cc	pose / selection.hh
ResidueDistanceFilter.hh	pose / Pose.fwd.hh
ResidueDistanceFilter.hh	types.hh
ResidueIEFilter.cc	conformation / Conformation.hh
ResidueIEFilter.cc	scoring / Energies.hh
ResidueIEFilter.cc	scoring / EnergyGraph.hh
ResidueIEFilter.cc	pose / Pose.hh
ResidueIEFilter.cc	pose / selection.hh
ResidueIEFilter.hh	pose / Pose.fwd.hh
ResidueIEFilter.hh	scoring / ScoreFunction.hh
ResidueIEFilter.hh	scoring / ScoreType.hh
ResidueSetChainEnergyFilter.cc	chemical / AtomType.hh
ResidueSetChainEnergyFilter.cc	chemical / ChemicalManager.fwd.hh
ResidueSetChainEnergyFilter.cc	conformation / Conformation.hh
ResidueSetChainEnergyFilter.cc	scoring / Energies.hh
ResidueSetChainEnergyFilter.cc	scoring / EnergyGraph.hh
ResidueSetChainEnergyFilter.cc	pose / Pose.hh
ResidueSetChainEnergyFilter.cc	scoring / ScoreFunction.hh
ResidueSetChainEnergyFilter.cc	scoring / ScoreFunctionFactory.hh
ResidueSetChainEnergyFilter.cc	scoring / ScoreType.hh
ResidueSetChainEnergyFilter.cc	scoring / ScoreTypeManager.hh
ResidueSetChainEnergyFilter.cc	pose / selection.hh
ResidueSetChainEnergyFilter.cc	util / SwitchResidueTypeSet.hh
ResidueSetChainEnergyFilter.hh	pose / Pose.fwd.hh
ResidueSetChainEnergyFilter.hh	scoring / ScoreFunction.hh
ResidueSetChainEnergyFilter.hh	scoring / ScoreType.hh
ResidueSetChainEnergyFilter.hh	types.hh
ResiduesInInterfaceFilter.cc	chemical / AtomType.hh
ResiduesInInterfaceFilter.cc	chemical / ChemicalManager.fwd.hh
ResiduesInInterfaceFilter.cc	conformation / Conformation.hh
ResiduesInInterfaceFilter.cc	scoring / Energies.hh
ResiduesInInterfaceFilter.cc	kinematics / FoldTree.hh
ResiduesInInterfaceFilter.cc	pack / pack_rotamers.hh
ResiduesInInterfaceFilter.cc	pack / task / PackerTask.hh
ResiduesInInterfaceFilter.cc	pose / PDBInfo.hh
ResiduesInInterfaceFilter.cc	pose / Pose.hh
ResiduesInInterfaceFilter.cc	scoring / ScoreFunction.hh
ResiduesInInterfaceFilter.cc	scoring / ScoreFunctionFactory.hh
ResiduesInInterfaceFilter.cc	scoring / ScoreType.hh
ResiduesInInterfaceFilter.cc	scoring / ScoreTypeManager.hh
ResiduesInInterfaceFilter.cc	util / SwitchResidueTypeSet.hh
ResiduesInInterfaceFilter.cc	conformation / symmetry / SymmetricConformation.hh
ResiduesInInterfaceFilter.cc	scoring / symmetry / SymmetricScoreFunction.hh
ResiduesInInterfaceFilter.cc	conformation / symmetry / SymmetryInfo.hh
ResiduesInInterfaceFilter.cc	pack / task / TaskFactory.hh
ResiduesInInterfaceFilter.cc	types.hh
ResiduesInInterfaceFilter.cc	pose / symmetry / util.hh
ResiduesInInterfaceFilter.hh	pose / Pose.fwd.hh
ResiduesInInterfaceFilter.hh	scoring / ScoreFunction.hh
ResiduesInInterfaceFilter.hh	types.hh
RGFilter.cc	pose / Pose.hh
RGFilter.cc	scoring / methods / RG_Energy_Fast.hh
RGFilter.cc	scoring / ScoreFunction.fwd.hh
RGFilter.cc	types.hh
RGFilter.hh	pose / Pose.fwd.hh
RmsdEvaluator.cc	pose / Pose.hh
RmsdEvaluator.cc	scoring / rms_util.hh
RmsdEvaluator.cc	io / silent / SilentStruct.hh
RmsdEvaluator.hh	pose / Pose.fwd.hh
RmsdEvaluator.hh	scoring / rms_util.hh
RmsdEvaluator.hh	io / silent / silent.fwd.hh
RmsdEvaluatorCreator.cc	import_pose / import_pose.hh
RmsdEvaluatorCreator.cc	pose / Pose.hh
RmsdEvaluatorCreator.cc	io / silent / silent.fwd.hh
RmsdEvaluatorCreator.cc	io / silent / SilentStruct.hh
RmsdEvaluatorCreator.hh	types.hh
RmsdTargetEvaluatorCreator.cc	import_pose / import_pose.hh
RmsdTargetEvaluatorCreator.cc	pose / Pose.hh
RmsdTargetEvaluatorCreator.cc	chemical / ResidueType.hh
RmsdTargetEvaluatorCreator.cc	scoring / ScoreFunction.hh
RmsdTargetEvaluatorCreator.cc	io / silent / silent.fwd.hh
RmsdTargetEvaluatorCreator.cc	io / silent / SilentStruct.hh
RmsdTargetEvaluatorCreator.hh	types.hh
RotamerBoltzmannWeight.cc	chemical / AA.hh
RotamerBoltzmannWeight.cc	scoring / Energies.hh
RotamerBoltzmannWeight.cc	scoring / EnergyGraph.hh
RotamerBoltzmannWeight.cc	graph / Graph.hh
RotamerBoltzmannWeight.cc	pack / make_symmetric_task.hh
RotamerBoltzmannWeight.cc	kinematics / MoveMap.hh
RotamerBoltzmannWeight.cc	pack / pack_rotamers.hh
RotamerBoltzmannWeight.cc	pack / task / PackerTask.hh
RotamerBoltzmannWeight.cc	pose / PDBInfo.hh
RotamerBoltzmannWeight.cc	pose / Pose.hh
RotamerBoltzmannWeight.cc	conformation / Residue.hh
RotamerBoltzmannWeight.cc	pack / rotamer_set / RotamerSet.hh
RotamerBoltzmannWeight.cc	pack / rotamer_set / RotamerSetFactory.hh
RotamerBoltzmannWeight.cc	pose / selection.hh
RotamerBoltzmannWeight.cc	pack / task / TaskFactory.hh
RotamerBoltzmannWeight.cc	pack / task / operation / TaskOperations.hh
RotamerBoltzmannWeight.cc	pose / symmetry / util.hh
RotamerBoltzmannWeight.cc	pose / util.hh
RotamerBoltzmannWeight.hh	chemical / AA.hh
RotamerBoltzmannWeight.hh	pose / Pose.fwd.hh
RotamerBoltzmannWeight.hh	scoring / ScoreFunction.fwd.hh
RotamerBoltzmannWeight.hh	pack / task / TaskFactory.fwd.hh
RPF_ScoreEvaluator.cc	pose / Pose.hh
RPF_ScoreEvaluator.hh	pose / Pose.fwd.hh
SAXSScoreFilter.cc	optimization / AtomTreeMinimizer.hh
SAXSScoreFilter.cc	chemical / ChemicalManager.hh
SAXSScoreFilter.cc	scoring / saxs / FormFactorManager.hh
SAXSScoreFilter.cc	kinematics / Jump.hh
SAXSScoreFilter.cc	optimization / MinimizerOptions.hh
SAXSScoreFilter.cc	kinematics / MoveMap.hh
SAXSScoreFilter.cc	pack / pack_rotamers.hh
SAXSScoreFilter.cc	pack / task / PackerTask.hh
SAXSScoreFilter.cc	pose / Pose.hh
SAXSScoreFilter.cc	chemical / ResidueType.hh
SAXSScoreFilter.cc	scoring / saxs / SAXSEnergyFA.hh
SAXSScoreFilter.cc	scoring / ScoreFunction.hh
SAXSScoreFilter.cc	scoring / ScoreFunctionFactory.hh
SAXSScoreFilter.cc	util / SwitchResidueTypeSet.hh
SAXSScoreFilter.cc	pack / task / TaskFactory.hh
SAXSScoreFilter.cc	types.hh
SAXSScoreFilter.hh	pose / Pose.fwd.hh
SAXSScoreFilter.hh	scoring / saxs / SAXSEnergyFA.hh
ScoreCutoffFilter.cc	scoring / Energies.hh
ScoreCutoffFilter.cc	scoring / EnergyGraph.hh
ScoreCutoffFilter.cc	scoring / EnergyMap.hh
ScoreCutoffFilter.cc	scoring / LREnergyContainer.hh
ScoreCutoffFilter.cc	pose / Pose.hh
ScoreCutoffFilter.cc	chemical / ResidueType.hh
ScoreCutoffFilter.cc	types.hh
ScoreCutoffFilter.hh	pose / Pose.fwd.hh
ScoreCutoffFilter.hh	scoring / ScoreType.hh
ScoreEvaluator.cc	scoring / constraints / ConstraintSet.hh
ScoreEvaluator.cc	pose / Pose.hh
ScoreEvaluator.cc	scoring / ScoreFunction.hh
ScoreEvaluator.cc	scoring / ScoreFunctionFactory.hh
ScoreEvaluator.cc	io / silent / SilentStruct.hh
ScoreEvaluator.hh	pose / Pose.fwd.hh
ScoreEvaluator.hh	scoring / rms_util.hh
ScoreEvaluator.hh	scoring / ScoreFunction.fwd.hh
ScoreEvaluator.hh	io / silent / silent.fwd.hh
ScoreTypeFilter.cc	chemical / AtomType.hh
ScoreTypeFilter.cc	chemical / ChemicalManager.fwd.hh
ScoreTypeFilter.cc	scoring / Energies.hh
ScoreTypeFilter.cc	pose / Pose.hh
ScoreTypeFilter.cc	scoring / ScoreFunction.hh
ScoreTypeFilter.cc	scoring / ScoreFunctionFactory.hh
ScoreTypeFilter.cc	scoring / ScoreType.hh
ScoreTypeFilter.cc	scoring / ScoreTypeManager.hh
ScoreTypeFilter.cc	util / SwitchResidueTypeSet.hh
ScoreTypeFilter.hh	pose / Pose.fwd.hh
ScoreTypeFilter.hh	scoring / ScoreFunction.hh
ScoreTypeFilter.hh	scoring / ScoreType.hh
ScoreTypeFilter.hh	types.hh
ShapeComplementarityFilter.cc	pose / Pose.hh
ShapeComplementarityFilter.cc	conformation / Residue.hh
ShapeComplementarityFilter.cc	pose / selection.hh
ShapeComplementarityFilter.cc	scoring / sc / ShapeComplementarityCalculator.hh
ShapeComplementarityFilter.cc	conformation / symmetry / SymmetryInfo.hh
ShapeComplementarityFilter.cc	types.hh
ShapeComplementarityFilter.cc	pose / symmetry / util.hh
ShapeComplementarityFilter.hh	pose / Pose.fwd.hh
ShapeComplementarityFilter.hh	scoring / sc / ShapeComplementarityCalculator.hh
SheetFilter.cc	pose / Pose.hh
SheetFilter.cc	conformation / Residue.hh
SheetFilter.cc	types.hh
SheetFilter.hh	pose / Pose.fwd.hh
SheetFilter.hh	types.hh
SidechainRmsdFilter.cc	chemical / AA.hh
SidechainRmsdFilter.cc	conformation / Conformation.hh
SidechainRmsdFilter.cc	import_pose / import_pose.hh
SidechainRmsdFilter.cc	pose / Pose.hh
SidechainRmsdFilter.cc	conformation / Residue.hh
SidechainRmsdFilter.cc	conformation / ResidueFactory.hh
SidechainRmsdFilter.cc	chemical / ResidueType.hh
SidechainRmsdFilter.cc	chemical / ResidueTypeSet.hh
SidechainRmsdFilter.cc	scoring / rms_util.hh
SidechainRmsdFilter.cc	pose / selection.hh
SidechainRmsdFilter.cc	conformation / util.hh
SidechainRmsdFilter.hh	pose / Pose.fwd.hh
SidechainRmsdFilter.hh	types.hh
SigmoidFilter.cc	pose / Pose.hh
SigmoidFilter.hh	pose / Pose.fwd.hh
SigmoidFilter.hh	types.hh
StructuralSimilarityEvaluator.cc	pose / Pose.hh
StructuralSimilarityEvaluator.cc	conformation / Residue.hh
StructuralSimilarityEvaluator.cc	scoring / rms_util.hh
StructuralSimilarityEvaluator.cc	types.hh
StructuralSimilarityEvaluator.hh	pose / Pose.fwd.hh
StructuralSimilarityEvaluator.hh	io / silent / SilentStruct.fwd.hh
StructuralSimilarityEvaluator.hh	types.hh
StructureSimilarityEvaluatorCreator.cc	pose / Pose.hh
StructureSimilarityEvaluatorCreator.cc	io / silent / silent.fwd.hh
StructureSimilarityEvaluatorCreator.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
StructureSimilarityEvaluatorCreator.cc	io / silent / SilentStruct.hh
StructureSimilarityEvaluatorCreator.cc	chemical / util.hh
StructureSimilarityEvaluatorCreator.hh	types.hh
SymmetricMotifFilter.cc	id / AtomID.hh
SymmetricMotifFilter.cc	id / AtomID_Map.hh
SymmetricMotifFilter.cc	pose / datacache / cacheable_observers.hh
SymmetricMotifFilter.cc	conformation / Conformation.hh
SymmetricMotifFilter.cc	import_pose / import_pose.hh
SymmetricMotifFilter.cc	pose / PDBInfo.hh
SymmetricMotifFilter.cc	pose / Pose.hh
SymmetricMotifFilter.cc	scoring / rms_util.hh
SymmetricMotifFilter.cc	scoring / rms_util.tmpl.hh
SymmetricMotifFilter.cc	conformation / symmetry / SymmetricConformation.hh
SymmetricMotifFilter.cc	conformation / symmetry / SymmetryInfo.hh
SymmetricMotifFilter.cc	types.hh
SymmetricMotifFilter.cc	pose / symmetry / util.hh
SymmetricMotifFilter.hh	pose / Pose.fwd.hh
SymmetricMotifFilter.hh	types.hh
TerminusDistanceFilter.cc	chemical / AA.hh
TerminusDistanceFilter.cc	chemical / AtomType.hh
TerminusDistanceFilter.cc	chemical / ChemicalManager.fwd.hh
TerminusDistanceFilter.cc	conformation / Conformation.hh
TerminusDistanceFilter.cc	scoring / Energies.hh
TerminusDistanceFilter.cc	kinematics / FoldTree.hh
TerminusDistanceFilter.cc	pack / pack_rotamers.hh
TerminusDistanceFilter.cc	pack / task / PackerTask.hh
TerminusDistanceFilter.cc	pose / PDBInfo.hh
TerminusDistanceFilter.cc	pose / Pose.hh
TerminusDistanceFilter.cc	scoring / ScoreFunction.hh
TerminusDistanceFilter.cc	scoring / ScoreFunctionFactory.hh
TerminusDistanceFilter.cc	scoring / ScoreType.hh
TerminusDistanceFilter.cc	scoring / ScoreTypeManager.hh
TerminusDistanceFilter.cc	util / SwitchResidueTypeSet.hh
TerminusDistanceFilter.cc	conformation / symmetry / SymmetricConformation.hh
TerminusDistanceFilter.cc	scoring / symmetry / SymmetricScoreFunction.hh
TerminusDistanceFilter.cc	conformation / symmetry / SymmetryInfo.hh
TerminusDistanceFilter.cc	pack / task / TaskFactory.hh
TerminusDistanceFilter.cc	types.hh
TerminusDistanceFilter.cc	pose / symmetry / util.hh
TerminusDistanceFilter.hh	pose / Pose.fwd.hh
TerminusDistanceFilter.hh	scoring / ScoreFunction.hh
TerminusDistanceFilter.hh	scoring / ScoreType.hh
TerminusDistanceFilter.hh	types.hh