rna → core Relation

File in src/protocols/swa/rna	Includes file in src/core
RNA_AnalyticLoopCloser.cc	kinematics / tree / Atom.hh
RNA_AnalyticLoopCloser.cc	id / AtomID.hh
RNA_AnalyticLoopCloser.cc	kinematics / AtomTree.hh
RNA_AnalyticLoopCloser.cc	id / DOF_ID.hh
RNA_AnalyticLoopCloser.cc	kinematics / FoldTree.hh
RNA_AnalyticLoopCloser.cc	id / NamedAtomID.hh
RNA_AnalyticLoopCloser.cc	pose / Pose.hh
RNA_AnalyticLoopCloser.cc	conformation / Residue.hh
RNA_AnalyticLoopCloser.cc	chemical / ResidueType.hh
RNA_AnalyticLoopCloser.cc	scoring / ScoreFunction.hh
RNA_AnalyticLoopCloser.cc	types.hh
RNA_AnalyticLoopCloser.cc	chemical / VariantType.hh
RNA_AnalyticLoopCloser.hh	kinematics / tree / Atom.fwd.hh
RNA_AnalyticLoopCloser.hh	id / DOF_ID.fwd.hh
RNA_AnalyticLoopCloser.hh	id / NamedAtomID.hh
RNA_AnalyticLoopCloser.hh	pose / Pose.fwd.hh
RNA_AnalyticLoopCloser.hh	scoring / ScoreFunction.hh
RNA_AnalyticLoopCloser.hh	types.hh
RNA_LoopCloseSampler.cc	id / AtomID.hh
RNA_LoopCloseSampler.cc	io / silent / BinaryRNASilentStruct.hh
RNA_LoopCloseSampler.cc	conformation / Conformation.hh
RNA_LoopCloseSampler.cc	scoring / Energies.hh
RNA_LoopCloseSampler.cc	scoring / EnergyGraph.hh
RNA_LoopCloseSampler.cc	scoring / EnergyMap.fwd.hh
RNA_LoopCloseSampler.cc	scoring / EnergyMap.hh
RNA_LoopCloseSampler.cc	pose / Pose.hh
RNA_LoopCloseSampler.cc	io / pdb / pose_io.hh
RNA_LoopCloseSampler.cc	scoring / rms_util.tmpl.hh
RNA_LoopCloseSampler.cc	scoring / rna / RNA_TorsionPotential.hh
RNA_LoopCloseSampler.cc	scoring / rna / RNA_Util.hh
RNA_LoopCloseSampler.cc	scoring / ScoreFunction.hh
RNA_LoopCloseSampler.cc	scoring / ScoreFunctionFactory.hh
RNA_LoopCloseSampler.cc	scoring / ScoreType.hh
RNA_LoopCloseSampler.cc	io / silent / SilentFileData.fwd.hh
RNA_LoopCloseSampler.cc	io / silent / SilentFileData.hh
RNA_LoopCloseSampler.cc	id / TorsionID.hh
RNA_LoopCloseSampler.cc	types.hh
RNA_LoopCloseSampler.cc	chemical / util.hh
RNA_LoopCloseSampler.cc	pose / util.hh
RNA_LoopCloseSampler.cc	chemical / VariantType.hh
RNA_LoopCloseSampler.hh	pose / Pose.fwd.hh
RNA_LoopCloseSampler.hh	scoring / ScoreFunction.fwd.hh
RNA_LoopCloseSampler.hh	io / silent / SilentFileData.fwd.hh
RNA_LoopCloseSampler.hh	types.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	id / AtomID.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / AtomType.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / ChemicalManager.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	id / DOF_ID.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / Energies.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / EnergyGraph.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / EnergyMap.fwd.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / EnergyMap.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / pack_rotamers.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / task / PackerTask.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	pose / Pose.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / pdb / pose_io.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	conformation / Residue.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	conformation / ResidueFactory.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / rotamer_trials.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / ScoreFunction.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / ScoreFunctionFactory.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	scoring / ScoreType.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	io / silent / SilentFileData.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / task / TaskFactory.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	pack / task / operation / TaskOperations.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	id / TorsionID.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	types.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / util.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	pose / util.hh
StepWiseRNA_AnalyticalLoopCloseSampler.cc	chemical / VariantType.hh
StepWiseRNA_AnalyticalLoopCloseSampler.hh	pack / task / PackerTask.fwd.hh
StepWiseRNA_AnalyticalLoopCloseSampler.hh	pose / Pose.fwd.hh
StepWiseRNA_AnalyticalLoopCloseSampler.hh	conformation / Residue.hh
StepWiseRNA_AnalyticalLoopCloseSampler.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_AnalyticalLoopCloseSampler.hh	io / silent / SilentFileData.fwd.hh
StepWiseRNA_AnalyticalLoopCloseSampler.hh	types.hh
StepWiseRNA_Base_Sugar_Rotamer.cc	pose / Pose.hh
StepWiseRNA_Base_Sugar_Rotamer.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_Base_Sugar_Rotamer.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_Base_Sugar_Rotamer.cc	id / TorsionID.hh
StepWiseRNA_Base_Sugar_Rotamer.hh	pose / Pose.fwd.hh
StepWiseRNA_Base_Sugar_Rotamer.hh	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_Base_Sugar_Rotamer.hh	id / TorsionID.fwd.hh
StepWiseRNA_Base_Sugar_Rotamer.hh	types.hh
StepWiseRNA_BaseCentroidScreener.cc	kinematics / FoldTree.hh
StepWiseRNA_BaseCentroidScreener.cc	pose / Pose.hh
StepWiseRNA_BaseCentroidScreener.cc	conformation / Residue.hh
StepWiseRNA_BaseCentroidScreener.cc	scoring / rna / RNA_CentroidInfo.hh
StepWiseRNA_BaseCentroidScreener.cc	kinematics / Stub.hh
StepWiseRNA_BaseCentroidScreener.cc	id / TorsionID.hh
StepWiseRNA_BaseCentroidScreener.hh	pose / Pose.fwd.hh
StepWiseRNA_BaseCentroidScreener.hh	scoring / rna / RNA_CentroidInfo.fwd.hh
StepWiseRNA_BaseCentroidScreener.hh	kinematics / Stub.fwd.hh
StepWiseRNA_BaseCentroidScreener.hh	types.hh
StepWiseRNA_Classes.hh	pose / Pose.fwd.hh
StepWiseRNA_Classes.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_Classes.hh	io / silent / SilentFileData.fwd.hh
StepWiseRNA_Classes.hh	id / TorsionID.hh
StepWiseRNA_Classes.hh	types.hh
StepWiseRNA_Clusterer.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_Clusterer.cc	chemical / ChemicalManager.hh
StepWiseRNA_Clusterer.cc	scoring / Energies.hh
StepWiseRNA_Clusterer.cc	pose / Pose.hh
StepWiseRNA_Clusterer.cc	io / pdb / pose_io.hh
StepWiseRNA_Clusterer.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
StepWiseRNA_Clusterer.cc	import_pose / pose_stream / PoseInputStream.hh
StepWiseRNA_Clusterer.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_Clusterer.cc	scoring / rms_util.hh
StepWiseRNA_Clusterer.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_Clusterer.cc	scoring / ScoreFunction.hh
StepWiseRNA_Clusterer.cc	scoring / ScoreFunctionFactory.hh
StepWiseRNA_Clusterer.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_Clusterer.cc	io / silent / SilentFileData.hh
StepWiseRNA_Clusterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
StepWiseRNA_Clusterer.cc	io / silent / SilentStruct.hh
StepWiseRNA_Clusterer.cc	types.hh
StepWiseRNA_Clusterer.cc	pose / util.hh
StepWiseRNA_Clusterer.hh	pose / Pose.fwd.hh
StepWiseRNA_Clusterer.hh	pose / Pose.hh
StepWiseRNA_Clusterer.hh	chemical / ResidueTypeSet.hh
StepWiseRNA_Clusterer.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_Clusterer.hh	io / silent / SilentFileData.fwd.hh
StepWiseRNA_Clusterer.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
StepWiseRNA_Clusterer.hh	io / silent / SilentStruct.fwd.hh
StepWiseRNA_Clusterer.hh	types.hh
StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / AtomPairConstraint.hh
StepWiseRNA_CombineLongLoopFilterer.cc	chemical / AtomType.hh
StepWiseRNA_CombineLongLoopFilterer.cc	chemical / ChemicalManager.hh
StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / ConstraintSet.hh
StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / FadeFunc.hh
StepWiseRNA_CombineLongLoopFilterer.cc	kinematics / FoldTree.hh
StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / Func.fwd.hh
StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / import_pose.hh
StepWiseRNA_CombineLongLoopFilterer.cc	pose / Pose.hh
StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / PoseInputStream.hh
StepWiseRNA_CombineLongLoopFilterer.cc	conformation / Residue.hh
StepWiseRNA_CombineLongLoopFilterer.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_CombineLongLoopFilterer.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_CombineLongLoopFilterer.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
StepWiseRNA_CombineLongLoopFilterer.cc	id / TorsionID.hh
StepWiseRNA_CombineLongLoopFilterer.cc	types.hh
StepWiseRNA_CombineLongLoopFilterer.cc	pose / util.hh
StepWiseRNA_CombineLongLoopFilterer.cc	chemical / util.hh
StepWiseRNA_CombineLongLoopFilterer.cc	pose / util.tmpl.hh
StepWiseRNA_CombineLongLoopFilterer.cc	chemical / VariantType.hh
StepWiseRNA_CombineLongLoopFilterer.hh	pose / Pose.fwd.hh
StepWiseRNA_CombineLongLoopFilterer.hh	chemical / ResidueTypeSet.fwd.hh
StepWiseRNA_CombineLongLoopFilterer.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
StepWiseRNA_CombineLongLoopFilterer.hh	types.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / AngleConstraint.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / AtomPairConstraint.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	optimization / AtomTreeMinimizer.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / AtomType.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / ChemicalManager.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / ConstraintSet.fwd.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / ConstraintSet.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / Energies.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / EnergyMap.fwd.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / EnergyMap.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	optimization / MinimizerOptions.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / pack_rotamers.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / task / PackerTask.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	pose / Pose.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	io / pdb / pose_io.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	conformation / Residue.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	conformation / ResidueFactory.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rna / RNA_TorsionPotential.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / rotamer_trials.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / ScoreFunction.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / ScoreFunctionFactory.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	io / silent / SilentFileData.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	pack / task / TaskFactory.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	id / TorsionID.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	types.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	scoring / constraints / util.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / util.hh
StepWiseRNA_FloatingBase_Sampler_Util.cc	chemical / VariantType.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	chemical / AA.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / constraints / ConstraintSet.fwd.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / constraints / ConstraintSet.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	kinematics / FoldTree.fwd.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	kinematics / FoldTree.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	kinematics / MoveMap.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	pose / Pose.fwd.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	pose / Pose.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	conformation / Residue.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	io / silent / RNA_SilentStruct.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / rna / RNA_Util.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	io / silent / SilentFileData.hh
StepWiseRNA_FloatingBase_Sampler_Util.hh	types.hh
StepWiseRNA_JobParameters.cc	kinematics / FoldTree.hh
StepWiseRNA_JobParameters.cc	pose / Pose.hh
StepWiseRNA_JobParameters.hh	kinematics / FoldTree.hh
StepWiseRNA_JobParameters.hh	pose / Pose.fwd.hh
StepWiseRNA_JobParameters.hh	types.hh
StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / AtomPairConstraint.hh
StepWiseRNA_JobParameters_Setup.cc	chemical / ChemicalManager.hh
StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / ConstraintSet.hh
StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / FadeFunc.hh
StepWiseRNA_JobParameters_Setup.cc	kinematics / FoldTree.hh
StepWiseRNA_JobParameters_Setup.cc	scoring / constraints / Func.fwd.hh
StepWiseRNA_JobParameters_Setup.cc	pose / Pose.hh
StepWiseRNA_JobParameters_Setup.cc	io / pdb / pose_io.hh
StepWiseRNA_JobParameters_Setup.cc	conformation / Residue.hh
StepWiseRNA_JobParameters_Setup.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_JobParameters_Setup.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_JobParameters_Setup.cc	id / TorsionID.hh
StepWiseRNA_JobParameters_Setup.cc	types.hh
StepWiseRNA_JobParameters_Setup.cc	pose / util.hh
StepWiseRNA_JobParameters_Setup.cc	chemical / util.hh
StepWiseRNA_JobParameters_Setup.cc	chemical / VariantType.hh
StepWiseRNA_JobParameters_Setup.hh	pose / Pose.fwd.hh
StepWiseRNA_JobParameters_Setup.hh	chemical / ResidueTypeSet.fwd.hh
StepWiseRNA_JobParameters_Setup.hh	types.hh
StepWiseRNA_Minimizer.cc	id / AtomID.hh
StepWiseRNA_Minimizer.cc	optimization / AtomTreeMinimizer.hh
StepWiseRNA_Minimizer.cc	chemical / AtomType.hh
StepWiseRNA_Minimizer.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_Minimizer.cc	conformation / Conformation.hh
StepWiseRNA_Minimizer.cc	scoring / Energies.hh
StepWiseRNA_Minimizer.cc	scoring / EnergyGraph.hh
StepWiseRNA_Minimizer.cc	scoring / EnergyMap.fwd.hh
StepWiseRNA_Minimizer.cc	scoring / EnergyMap.hh
StepWiseRNA_Minimizer.cc	optimization / MinimizerOptions.hh
StepWiseRNA_Minimizer.cc	pose / Pose.hh
StepWiseRNA_Minimizer.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_Minimizer.cc	scoring / rna / RNA_TorsionPotential.hh
StepWiseRNA_Minimizer.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_Minimizer.cc	scoring / ScoreFunction.hh
StepWiseRNA_Minimizer.cc	scoring / ScoreFunctionFactory.hh
StepWiseRNA_Minimizer.cc	scoring / ScoreType.hh
StepWiseRNA_Minimizer.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_Minimizer.cc	io / silent / SilentFileData.hh
StepWiseRNA_Minimizer.cc	id / TorsionID.hh
StepWiseRNA_Minimizer.cc	types.hh
StepWiseRNA_Minimizer.cc	chemical / util.hh
StepWiseRNA_Minimizer.cc	pose / util.hh
StepWiseRNA_Minimizer.cc	chemical / VariantType.hh
StepWiseRNA_Minimizer.hh	pose / Pose.fwd.hh
StepWiseRNA_Minimizer.hh	conformation / Residue.hh
StepWiseRNA_Minimizer.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_Minimizer.hh	io / silent / SilentFileData.fwd.hh
StepWiseRNA_Minimizer.hh	types.hh
StepWiseRNA_OutputData.cc	scoring / constraints / AngleConstraint.hh
StepWiseRNA_OutputData.cc	scoring / constraints / AtomPairConstraint.hh
StepWiseRNA_OutputData.cc	optimization / AtomTreeMinimizer.hh
StepWiseRNA_OutputData.cc	chemical / AtomType.hh
StepWiseRNA_OutputData.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_OutputData.cc	chemical / ChemicalManager.hh
StepWiseRNA_OutputData.cc	scoring / constraints / ConstraintSet.fwd.hh
StepWiseRNA_OutputData.cc	scoring / constraints / ConstraintSet.hh
StepWiseRNA_OutputData.cc	kinematics / MoveMap.hh
StepWiseRNA_OutputData.cc	pack / pack_rotamers.hh
StepWiseRNA_OutputData.cc	pack / task / PackerTask.hh
StepWiseRNA_OutputData.cc	pose / Pose.hh
StepWiseRNA_OutputData.cc	io / pdb / pose_io.hh
StepWiseRNA_OutputData.cc	conformation / Residue.hh
StepWiseRNA_OutputData.cc	conformation / ResidueFactory.hh
StepWiseRNA_OutputData.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_OutputData.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_OutputData.cc	scoring / rna / RNA_BaseDoubletClasses.hh
StepWiseRNA_OutputData.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_OutputData.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_OutputData.cc	pack / rotamer_trials.hh
StepWiseRNA_OutputData.cc	scoring / ScoreFunction.hh
StepWiseRNA_OutputData.cc	scoring / ScoreType.hh
StepWiseRNA_OutputData.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_OutputData.cc	io / silent / SilentFileData.hh
StepWiseRNA_OutputData.cc	pack / task / TaskFactory.hh
StepWiseRNA_OutputData.cc	types.hh
StepWiseRNA_OutputData.cc	scoring / constraints / util.hh
StepWiseRNA_OutputData.cc	chemical / util.hh
StepWiseRNA_OutputData.cc	chemical / VariantType.hh
StepWiseRNA_OutputData.hh	chemical / AA.hh
StepWiseRNA_OutputData.hh	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_OutputData.hh	kinematics / FoldTree.fwd.hh
StepWiseRNA_OutputData.hh	optimization / MinimizerOptions.hh
StepWiseRNA_OutputData.hh	kinematics / MoveMap.hh
StepWiseRNA_OutputData.hh	pose / Pose.fwd.hh
StepWiseRNA_OutputData.hh	conformation / Residue.hh
StepWiseRNA_OutputData.hh	io / silent / RNA_SilentStruct.hh
StepWiseRNA_OutputData.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_OutputData.hh	io / silent / SilentFileData.hh
StepWiseRNA_OutputData.hh	types.hh
StepWiseRNA_PoseSetup.cc	pose / annotated_sequence.hh
StepWiseRNA_PoseSetup.cc	scoring / constraints / AtomPairConstraint.hh
StepWiseRNA_PoseSetup.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_PoseSetup.cc	chemical / ChemicalManager.hh
StepWiseRNA_PoseSetup.cc	scoring / constraints / ConstraintSet.hh
StepWiseRNA_PoseSetup.cc	scoring / constraints / FadeFunc.hh
StepWiseRNA_PoseSetup.cc	kinematics / FoldTree.hh
StepWiseRNA_PoseSetup.cc	scoring / constraints / Func.fwd.hh
StepWiseRNA_PoseSetup.cc	import_pose / import_pose.hh
StepWiseRNA_PoseSetup.cc	pose / Pose.hh
StepWiseRNA_PoseSetup.cc	conformation / Residue.hh
StepWiseRNA_PoseSetup.cc	conformation / ResidueFactory.hh
StepWiseRNA_PoseSetup.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_PoseSetup.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_PoseSetup.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_PoseSetup.cc	id / TorsionID.hh
StepWiseRNA_PoseSetup.cc	types.hh
StepWiseRNA_PoseSetup.cc	pose / util.hh
StepWiseRNA_PoseSetup.cc	chemical / util.hh
StepWiseRNA_PoseSetup.cc	chemical / VariantType.hh
StepWiseRNA_PoseSetup.hh	pose / Pose.fwd.hh
StepWiseRNA_PoseSetup.hh	chemical / ResidueTypeSet.fwd.hh
StepWiseRNA_PoseSetup.hh	types.hh
StepWiseRNA_ResidueInfo.cc	chemical / AtomType.hh
StepWiseRNA_ResidueInfo.cc	conformation / Conformation.hh
StepWiseRNA_ResidueInfo.cc	pose / Pose.fwd.hh
StepWiseRNA_ResidueInfo.cc	pose / Pose.hh
StepWiseRNA_ResidueInfo.cc	conformation / Residue.hh
StepWiseRNA_ResidueInfo.hh	pose / Pose.fwd.hh
StepWiseRNA_ResidueInfo.hh	types.hh
StepWiseRNA_ResidueSampler.cc	id / AtomID.hh
StepWiseRNA_ResidueSampler.cc	chemical / AtomType.hh
StepWiseRNA_ResidueSampler.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_ResidueSampler.cc	chemical / ChemicalManager.hh
StepWiseRNA_ResidueSampler.cc	id / DOF_ID.hh
StepWiseRNA_ResidueSampler.cc	scoring / Energies.hh
StepWiseRNA_ResidueSampler.cc	scoring / EnergyGraph.hh
StepWiseRNA_ResidueSampler.cc	scoring / EnergyMap.fwd.hh
StepWiseRNA_ResidueSampler.cc	scoring / EnergyMap.hh
StepWiseRNA_ResidueSampler.cc	pack / pack_rotamers.hh
StepWiseRNA_ResidueSampler.cc	pack / task / PackerTask.hh
StepWiseRNA_ResidueSampler.cc	pose / Pose.hh
StepWiseRNA_ResidueSampler.cc	io / pdb / pose_io.hh
StepWiseRNA_ResidueSampler.cc	conformation / Residue.hh
StepWiseRNA_ResidueSampler.cc	conformation / ResidueFactory.hh
StepWiseRNA_ResidueSampler.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_ResidueSampler.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_ResidueSampler.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_ResidueSampler.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_ResidueSampler.cc	pack / rotamer_trials.hh
StepWiseRNA_ResidueSampler.cc	scoring / ScoreFunction.hh
StepWiseRNA_ResidueSampler.cc	scoring / ScoreFunctionFactory.hh
StepWiseRNA_ResidueSampler.cc	scoring / ScoreType.hh
StepWiseRNA_ResidueSampler.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_ResidueSampler.cc	io / silent / SilentFileData.hh
StepWiseRNA_ResidueSampler.cc	pack / task / TaskFactory.hh
StepWiseRNA_ResidueSampler.cc	pack / task / operation / TaskOperations.hh
StepWiseRNA_ResidueSampler.cc	id / TorsionID.hh
StepWiseRNA_ResidueSampler.cc	types.hh
StepWiseRNA_ResidueSampler.cc	chemical / util.hh
StepWiseRNA_ResidueSampler.cc	pose / util.hh
StepWiseRNA_ResidueSampler.cc	chemical / VariantType.hh
StepWiseRNA_ResidueSampler.hh	pack / task / PackerTask.fwd.hh
StepWiseRNA_ResidueSampler.hh	pose / Pose.fwd.hh
StepWiseRNA_ResidueSampler.hh	conformation / Residue.hh
StepWiseRNA_ResidueSampler.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_ResidueSampler.hh	io / silent / SilentFileData.fwd.hh
StepWiseRNA_ResidueSampler.hh	types.hh
StepWiseRNA_RotamerGenerator.cc	pose / Pose.hh
StepWiseRNA_RotamerGenerator.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_RotamerGenerator.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_RotamerGenerator.cc	id / TorsionID.hh
StepWiseRNA_RotamerGenerator.hh	pose / Pose.fwd.hh
StepWiseRNA_RotamerGenerator.hh	id / TorsionID.fwd.hh
StepWiseRNA_RotamerGenerator.hh	id / TorsionID.hh
StepWiseRNA_RotamerGenerator.hh	types.hh
StepWiseRNA_RotamerGenerator_Wrapper.cc	pose / Pose.hh
StepWiseRNA_RotamerGenerator_Wrapper.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_RotamerGenerator_Wrapper.cc	id / TorsionID.hh
StepWiseRNA_RotamerGenerator_Wrapper.hh	pose / Pose.fwd.hh
StepWiseRNA_RotamerGenerator_Wrapper.hh	id / TorsionID.fwd.hh
StepWiseRNA_RotamerGenerator_Wrapper.hh	id / TorsionID.hh
StepWiseRNA_RotamerGenerator_Wrapper.hh	types.hh
StepWiseRNA_Util.cc	scoring / constraints / AngleConstraint.hh
StepWiseRNA_Util.cc	id / AtomID.hh
StepWiseRNA_Util.cc	id / AtomID_Map.hh
StepWiseRNA_Util.cc	scoring / constraints / AtomPairConstraint.hh
StepWiseRNA_Util.cc	optimization / AtomTreeMinimizer.hh
StepWiseRNA_Util.cc	chemical / AtomType.hh
StepWiseRNA_Util.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_Util.cc	chemical / ChemicalManager.hh
StepWiseRNA_Util.cc	scoring / constraints / ConstraintSet.fwd.hh
StepWiseRNA_Util.cc	scoring / constraints / ConstraintSet.hh
StepWiseRNA_Util.cc	import_pose / import_pose.hh
StepWiseRNA_Util.cc	kinematics / MoveMap.hh
StepWiseRNA_Util.cc	pack / pack_rotamers.hh
StepWiseRNA_Util.cc	pack / task / PackerTask.hh
StepWiseRNA_Util.cc	pose / Pose.hh
StepWiseRNA_Util.cc	conformation / Residue.hh
StepWiseRNA_Util.cc	conformation / ResidueFactory.hh
StepWiseRNA_Util.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_Util.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_Util.cc	scoring / rna / RNA_BaseDoubletClasses.hh
StepWiseRNA_Util.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_Util.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_Util.cc	pack / rotamer_trials.hh
StepWiseRNA_Util.cc	scoring / ScoreFunction.hh
StepWiseRNA_Util.cc	scoring / ScoreType.hh
StepWiseRNA_Util.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_Util.cc	io / silent / SilentFileData.hh
StepWiseRNA_Util.cc	pack / task / TaskFactory.hh
StepWiseRNA_Util.cc	types.hh
StepWiseRNA_Util.cc	scoring / constraints / util.hh
StepWiseRNA_Util.cc	pose / util.hh
StepWiseRNA_Util.cc	chemical / util.hh
StepWiseRNA_Util.cc	pose / util.tmpl.hh
StepWiseRNA_Util.cc	chemical / VariantType.hh
StepWiseRNA_Util.hh	chemical / AA.hh
StepWiseRNA_Util.hh	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_Util.hh	kinematics / FoldTree.fwd.hh
StepWiseRNA_Util.hh	optimization / MinimizerOptions.hh
StepWiseRNA_Util.hh	kinematics / MoveMap.hh
StepWiseRNA_Util.hh	pack / task / PackerTask.fwd.hh
StepWiseRNA_Util.hh	pose / Pose.fwd.hh
StepWiseRNA_Util.hh	conformation / Residue.hh
StepWiseRNA_Util.hh	io / silent / RNA_SilentStruct.hh
StepWiseRNA_Util.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_Util.hh	io / silent / SilentFileData.hh
StepWiseRNA_Util.hh	types.hh
StepWiseRNA_VDW_Bin_Screener.cc	id / AtomID_Map.hh
StepWiseRNA_VDW_Bin_Screener.cc	chemical / AtomType.hh
StepWiseRNA_VDW_Bin_Screener.cc	chemical / ChemicalManager.hh
StepWiseRNA_VDW_Bin_Screener.cc	import_pose / import_pose.hh
StepWiseRNA_VDW_Bin_Screener.cc	kinematics / MoveMap.hh
StepWiseRNA_VDW_Bin_Screener.cc	pose / Pose.hh
StepWiseRNA_VDW_Bin_Screener.cc	conformation / Residue.hh
StepWiseRNA_VDW_Bin_Screener.cc	conformation / ResidueFactory.hh
StepWiseRNA_VDW_Bin_Screener.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_VDW_Bin_Screener.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_VDW_Bin_Screener.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_VDW_Bin_Screener.cc	types.hh
StepWiseRNA_VDW_Bin_Screener.cc	chemical / util.hh
StepWiseRNA_VDW_Bin_Screener.cc	chemical / VariantType.hh
StepWiseRNA_VDW_Bin_Screener.hh	chemical / AA.hh
StepWiseRNA_VDW_Bin_Screener.hh	kinematics / FoldTree.fwd.hh
StepWiseRNA_VDW_Bin_Screener.hh	pose / Pose.fwd.hh
StepWiseRNA_VDW_Bin_Screener.hh	pose / Pose.hh
StepWiseRNA_VDW_Bin_Screener.hh	conformation / Residue.hh
StepWiseRNA_VDW_Bin_Screener.hh	types.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / AngleConstraint.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / AtomPairConstraint.hh
StepWiseRNA_VirtualRiboseSampler.cc	optimization / AtomTreeMinimizer.hh
StepWiseRNA_VirtualRiboseSampler.cc	chemical / AtomType.hh
StepWiseRNA_VirtualRiboseSampler.cc	io / silent / BinaryRNASilentStruct.hh
StepWiseRNA_VirtualRiboseSampler.cc	chemical / ChemicalManager.hh
StepWiseRNA_VirtualRiboseSampler.cc	conformation / Conformation.fwd.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / ConstraintSet.fwd.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / ConstraintSet.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / Energies.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / EnergyMap.fwd.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / EnergyMap.hh
StepWiseRNA_VirtualRiboseSampler.cc	optimization / MinimizerOptions.hh
StepWiseRNA_VirtualRiboseSampler.cc	pack / pack_rotamers.hh
StepWiseRNA_VirtualRiboseSampler.cc	pack / task / PackerTask.hh
StepWiseRNA_VirtualRiboseSampler.cc	pose / Pose.hh
StepWiseRNA_VirtualRiboseSampler.cc	io / pdb / pose_io.hh
StepWiseRNA_VirtualRiboseSampler.cc	conformation / Residue.hh
StepWiseRNA_VirtualRiboseSampler.cc	conformation / ResidueFactory.hh
StepWiseRNA_VirtualRiboseSampler.cc	chemical / ResidueTypeSet.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / rms_util.tmpl.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / rna / RNA_FittedTorsionInfo.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / rna / RNA_TorsionPotential.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / rna / RNA_Util.hh
StepWiseRNA_VirtualRiboseSampler.cc	pack / rotamer_trials.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / ScoreFunction.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / ScoreFunctionFactory.hh
StepWiseRNA_VirtualRiboseSampler.cc	io / silent / SilentFileData.fwd.hh
StepWiseRNA_VirtualRiboseSampler.cc	io / silent / SilentFileData.hh
StepWiseRNA_VirtualRiboseSampler.cc	pack / task / TaskFactory.hh
StepWiseRNA_VirtualRiboseSampler.cc	id / TorsionID.hh
StepWiseRNA_VirtualRiboseSampler.cc	types.hh
StepWiseRNA_VirtualRiboseSampler.cc	scoring / constraints / util.hh
StepWiseRNA_VirtualRiboseSampler.cc	chemical / util.hh
StepWiseRNA_VirtualRiboseSampler.cc	pose / util.hh
StepWiseRNA_VirtualRiboseSampler.cc	chemical / VariantType.hh
StepWiseRNA_VirtualRiboseSampler.hh	chemical / AA.hh
StepWiseRNA_VirtualRiboseSampler.hh	scoring / constraints / ConstraintSet.fwd.hh
StepWiseRNA_VirtualRiboseSampler.hh	scoring / constraints / ConstraintSet.hh
StepWiseRNA_VirtualRiboseSampler.hh	kinematics / FoldTree.fwd.hh
StepWiseRNA_VirtualRiboseSampler.hh	kinematics / FoldTree.hh
StepWiseRNA_VirtualRiboseSampler.hh	kinematics / MoveMap.hh
StepWiseRNA_VirtualRiboseSampler.hh	pose / Pose.fwd.hh
StepWiseRNA_VirtualRiboseSampler.hh	pose / Pose.hh
StepWiseRNA_VirtualRiboseSampler.hh	conformation / Residue.hh
StepWiseRNA_VirtualRiboseSampler.hh	io / silent / RNA_SilentStruct.hh
StepWiseRNA_VirtualRiboseSampler.hh	scoring / rna / RNA_Util.hh
StepWiseRNA_VirtualRiboseSampler.hh	scoring / ScoreFunction.fwd.hh
StepWiseRNA_VirtualRiboseSampler.hh	io / silent / SilentFileData.hh
StepWiseRNA_VirtualRiboseSampler.hh	types.hh